View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14271_low_17 (Length: 353)

Name: NF14271_low_17
Description: NF14271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14271_low_17
NF14271_low_17
[»] chr1 (4 HSPs)
chr1 (16-231)||(1466743-1466958)
chr1 (20-208)||(35923210-35923398)
chr1 (35-199)||(5050497-5050661)
chr1 (281-335)||(1467094-1467148)
[»] chr3 (7 HSPs)
chr3 (16-209)||(28838369-28838562)
chr3 (16-206)||(9450670-9450860)
chr3 (16-212)||(17724519-17724715)
chr3 (16-212)||(19025748-19025944)
chr3 (16-214)||(28830399-28830597)
chr3 (34-195)||(26640704-26640865)
chr3 (36-194)||(20798757-20798914)
[»] chr7 (7 HSPs)
chr7 (36-197)||(19545404-19545565)
chr7 (39-202)||(19538748-19538911)
chr7 (36-192)||(47228519-47228675)
chr7 (36-161)||(47465706-47465831)
chr7 (36-165)||(19549755-19549885)
chr7 (52-165)||(19554968-19555081)
chr7 (59-116)||(19551972-19552029)
[»] chr5 (7 HSPs)
chr5 (20-195)||(19242376-19242551)
chr5 (36-195)||(9211371-9211530)
chr5 (16-202)||(38783792-38783978)
chr5 (36-218)||(9369955-9370137)
chr5 (40-195)||(12560131-12560287)
chr5 (36-199)||(35181989-35182152)
chr5 (44-168)||(12556892-12557016)
[»] chr8 (4 HSPs)
chr8 (38-220)||(9937274-9937456)
chr8 (36-199)||(9939644-9939807)
chr8 (38-196)||(9945694-9945855)
chr8 (63-177)||(3427899-3428013)
[»] chr4 (2 HSPs)
chr4 (36-195)||(44089673-44089832)
chr4 (149-194)||(38052155-38052200)
[»] chr2 (3 HSPs)
chr2 (108-225)||(7959585-7959702)
chr2 (40-87)||(43924059-43924105)
chr2 (126-166)||(43923991-43924031)


Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 231
Target Start/End: Original strand, 1466743 - 1466958
Alignment:
Q  16 aaagggtatggcattggattacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggagg 115  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  1466743 aaagggtatggcattggattaaatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgacttccattgcacttaggagg 1466842  T
Q  116 ggtgcctttctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaatcttagtttaaata 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1466843 ggtgcctttctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaatcttagtttaaata 1466942  T
Q  216 tttttaagttggaatt 231  Q
    |||| |||||||||||    
T  1466943 ttttgaagttggaatt 1466958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 35923210 - 35923398
Alignment:
Q  20 ggtatggcattggattacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtg 119  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||  | |||| |||||||||||||||||||||||    
T  35923210 ggtatggcattgaattacttacttacctggatggggtcaatgggtgatcatgaaggcccatggcctaggcaagtgacctccattgcacttaggaggggtg 35923309  T
Q  120 cctttctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaatcttagt 208  Q
    | |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||    
T  35923310 cttgcctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccttccaattttagt 35923398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 35 - 199
Target Start/End: Complemental strand, 5050661 - 5050497
Alignment:
Q  35 tacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtcta 134  Q
    |||||||||||||||||||||||||||| ||||||| |||| |||||||||||   ||||| ||||||||||||||||||||||||    ||||||| |     
T  5050661 tacatacttacctggatggggtcaatggatgatcaaaaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgctcgcctaaggtgtt 5050562  T
Q  135 cccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttc 199  Q
    | ||||| |   | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5050561 ctcaagtagaacaacctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttc 5050497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 281 - 335
Target Start/End: Original strand, 1467094 - 1467148
Alignment:
Q  281 gcaatttcagttcaaaactgaactattcttttgtttcttttttaaagtagcaatt 335  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  1467094 gcaatttcagttcaaaactgaactattcatttgtttcttttttaatgtagcaatt 1467148  T

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Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 28838562 - 28838369
Alignment:
Q  16 aaagggtatggcattggattacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggagg 115  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  28838562 aaagggtatggcattgtattatatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgacctccattgcacttaggagg 28838463  T
Q  116 ggtgcctttctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaatcttagtt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  28838462 ggtgcctttctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccctccaattttagtt 28838369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 9450670 - 9450860
Alignment:
Q  16 aaagggtatggcattggattacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggagg 115  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||    
T  9450670 aaaggctatggcattggattacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgacctccattgcactttggagg 9450769  T
Q  116 ggtgcctttctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaatctta 206  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9450770 ggtgccttcctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccctccaatctta 9450860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 17724519 - 17724715
Alignment:
Q  16 aaagggtatggcattggattacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggagg 115  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||    
T  17724519 aaagggtatggtattggattacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgacctccattgcacataggagg 17724618  T
Q  116 ggtgcctttctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaatcttagtttaa 212  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||    
T  17724619 ggtgccttcctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccctctaatcttattttaa 17724715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 19025748 - 19025944
Alignment:
Q  16 aaagggtatggcattggattacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggagg 115  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||    
T  19025748 aaagggtatggtattggattacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgacctccattgcacataggagg 19025847  T
Q  116 ggtgcctttctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaatcttagtttaa 212  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||    
T  19025848 ggtgccttcctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccctctaatcttattttaa 19025944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 28830597 - 28830399
Alignment:
Q  16 aaagggtatggcattggattacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggagg 115  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  28830597 aaagggtatggcattggattatatacttacctggatggggtcaatggatgatcaagaaggtccatggcctagaaaggtgacctccattgcacttaggagg 28830498  T
Q  116 ggtgcctttctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaatcttagtttaaat 214  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||| |||||||||||    
T  28830497 ggtgcttttctaaggtctacccaagtggtggagcctacatcataatttgttgttgtgggggcctgcgttcgcgcggccccttccaattttagtttaaat 28830399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 34 - 195
Target Start/End: Original strand, 26640704 - 26640865
Alignment:
Q  34 ttacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtct 133  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||   ||||||||||    
T  26640704 ttacttacttacctggatggggtcgatgggtgatcaagaaggcccatggcctagacaagtgacctccattgcacttaggaggggtgctagtctaaggtct 26640803  T
Q  134 acccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc 195  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  26640804 acccaagtggtggaacctacatcataatttgttgcagtgggggcctgcgttcgcgcggcccc 26640865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 36 - 194
Target Start/End: Complemental strand, 20798914 - 20798757
Alignment:
Q  36 acatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctac 135  Q
    |||||||||||||||||||||||||||||||||||||| |  ||||||||||  | |||| |||||||||||||||||  |||||    |||||||||||    
T  20798914 acatacttacctggatggggtcaatgggtgatcaagaatgttcatggcctaggcaagtgacctccattgcacttaggaaaggtgctagcctaaggtctac 20798815  T
Q  136 ccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccc 194  Q
    ||||||||||||||||||||||||||||||||| |  ||||| ||||||||||| ||||    
T  20798814 ccaagtggtggagcctacatcataatttgttgcag-cggggcttgcgttcgcgcagccc 20798757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 134; Significance: 1e-69; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 36 - 197
Target Start/End: Complemental strand, 19545565 - 19545404
Alignment:
Q  36 acatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctac 135  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||| ||||||||||||| ||||||||||  |||||||||||||    
T  19545565 acatacttacctggatggggtcaatgggtgatcatgaaggcctatggcctagaaaagtgacctccattgcactttggaggggtgctcttctaaggtctac 19545466  T
Q  136 ccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccct 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19545465 ccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccct 19545404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 39 - 202
Target Start/End: Complemental strand, 19538911 - 19538748
Alignment:
Q  39 tacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctaccca 138  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| || |||| ||||||||||||| ||||||||||  | |||||||||||| |    
T  19538911 tacttacctggatggggtcaatgggtgatcacgaaggcccatggcctaggaaagtgacctccattgcactttggaggggtgctatcctaaggtctaccta 19538812  T
Q  139 agtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaat 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19538811 agtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaat 19538748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 36 - 192
Target Start/End: Original strand, 47228519 - 47228675
Alignment:
Q  36 acatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctac 135  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||  |||||||||||||     
T  47228519 acatacttacctggatggggtcaatgggtgatcatgaaggcctatggcctagaaaggtgacctccattgcacttaggaggggtgtttttctaaggtctat 47228618  T
Q  136 ccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggc 192  Q
    |||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||    
T  47228619 ccaagtggtggagcctacattataatttgttgctgagggggtctgcgttcgcgcggc 47228675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 36 - 161
Target Start/End: Complemental strand, 47465831 - 47465706
Alignment:
Q  36 acatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctac 135  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||| |||||||||| ||||||||||||||    
T  47465831 acatacttacctggatggggtcaatgggtgatcatgaaggcccatggcctagaaaggtggcctccattgcacttgggaggggtgcttttctaaggtctac 47465732  T
Q  136 ccaagtggtggagcctacatcataat 161  Q
     |||||||||||||||||||||||||    
T  47465731 tcaagtggtggagcctacatcataat 47465706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 36 - 165
Target Start/End: Complemental strand, 19549885 - 19549755
Alignment:
Q  36 acatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctac 135  Q
    |||||| |||||||| ||||||||||||||||||| |||||||||| ||||||   ||||  ||||||||||||||||||| ||| | |||||||   ||    
T  19549885 acatacatacctggacggggtcaatgggtgatcaataaggcccatgacctagacgagtgacttccattgcacttaggagggttgcttgtctaaggctcac 19549786  T
Q  136 ccaagtggtggag-cctacatcataatttgt 165  Q
    ||||||||||||| ||||| |||||||||||    
T  19549785 ccaagtggtggagacctacgtcataatttgt 19549755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 52 - 165
Target Start/End: Complemental strand, 19555081 - 19554968
Alignment:
Q  52 ggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctacccaagtggtggagcct 151  Q
    ||||||||||| ||||||| |||| ||||| ||||||   || | |||||||||||||||||||| |||   ||||||| | ||||||||||||| ||||    
T  19555081 ggggtcaatggatgatcaaaaaggtccatgacctagacgagtaacctccattgcacttaggagggttgctggtctaaggcccacccaagtggtggtgcct 19554982  T
Q  152 acatcataatttgt 165  Q
    || |||||||||||    
T  19554981 acgtcataatttgt 19554968  T

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Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 19552029 - 19551972
Alignment:
Q  59 atgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggg 116  Q
    ||||||||||||||||||||||| ||||||   |||| ||||||||||||||||||||    
T  19552029 atgggtgatcaagaaggcccatgacctagacgagtgacctccattgcacttaggaggg 19551972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 20 - 195
Target Start/End: Complemental strand, 19242551 - 19242376
Alignment:
Q  20 ggtatggcattggattacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtg 119  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||| |||||||||||||||||||||||    
T  19242551 ggtatgacattgaattacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggcaagtgacctccattgcacttaggaggggtg 19242452  T
Q  120 cctttctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc 195  Q
    |   ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  19242451 ctagtctaaggtctacccaagtggtggagcctacatcataatttgttgcagcgggggcctgcgttcgcgcggcccc 19242376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 36 - 195
Target Start/End: Complemental strand, 9211530 - 9211371
Alignment:
Q  36 acatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctac 135  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||  | |||| || |||||||||| | || |||||    |||||||||||    
T  9211530 acatacttacctggatggggtcaatgggtgatcaggaaggcccatggcctaggcaagtgaccttcattgcactttgaagaggtgctagcctaaggtctac 9211431  T
Q  136 ccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9211430 ccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc 9211371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 38783792 - 38783978
Alignment:
Q  16 aaagggtatggcattggattacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggagg 115  Q
    |||| ||||| |||||||  ||||||||||||||||||||||||||| |||||||||||| |||||||||||   ||||| |||||||||||||||||||    
T  38783792 aaagtgtatgacattggacaacatacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggagg 38783891  T
Q  116 ggtgcctttctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaat 202  Q
    |||||||   |||||| | | ||||| |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38783892 ggtgcctacttaaggtgttctcaagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaat 38783978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 36 - 218
Target Start/End: Original strand, 9369955 - 9370137
Alignment:
Q  36 acatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctac 135  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||  | |||| || |||||||||| | ||||||||    |||||||||||    
T  9369955 acatacttacctggatggggtcaatgggtgatcaaaaaggcccatggcctaggcaagtgaccttcattgcactttgaaggggtgctagcctaaggtctac 9370054  T
Q  136 ccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaatcttagtttaaatattt 218  Q
    |||||||||||||||||||||||||| |||||  || ||||| |||||||||||||||||   |||| |||||||||||||||    
T  9370055 ccaagtggtggagcctacatcataatatgttgtggttggggcttgcgttcgcgcggcccctcccaattttagtttaaatattt 9370137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 40 - 195
Target Start/End: Original strand, 12560131 - 12560287
Alignment:
Q  40 acttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtcta-ccca 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  | |||| ||||||||||||| ||||||||||    |||||||||| ||||    
T  12560131 acttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggcaagtgacctccattgcactttggaggggtgctagcctaaggtctacccca 12560230  T
Q  139 agtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc 195  Q
    |||||||||||||||||||||||||||||| |||||||  ||||||||||| |||||    
T  12560231 agtggtggagcctacatcataatttgttgccgtgggggtttgcgttcgcgcagcccc 12560287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 36 - 199
Target Start/End: Original strand, 35181989 - 35182152
Alignment:
Q  36 acatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctac 135  Q
    ||||||||||||||||||||||||||| ||||||  ||||  |||||||||||  ||||| ||||||||||||| ||||||||||   |||||||| | |    
T  35181989 acatacttacctggatggggtcaatggatgatcattaaggttcatggcctagattggtgacctccattgcactttggaggggtgctagtctaaggtgttc 35182088  T
Q  136 ccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttc 199  Q
     ||||| |   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35182089 tcaagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttc 35182152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 44 - 168
Target Start/End: Original strand, 12556892 - 12557016
Alignment:
Q  44 acctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctacccaagtgg 143  Q
    ||||||||||||||||| ||||||||||||||| ||| |||||  |   ||| ||||||||||||| ||||||||||    ||||||||||| |||||||    
T  12556892 acctggatggggtcaataggtgatcaagaaggctcatagcctaagacaatgacctccattgcactttggaggggtgctggcctaaggtctactcaagtgg 12556991  T
Q  144 tggagcctacatcataatttgttgc 168  Q
    |||||||||||||||||||||||||    
T  12556992 tggagcctacatcataatttgttgc 12557016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 38 - 220
Target Start/End: Original strand, 9937274 - 9937456
Alignment:
Q  38 atacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctaccc 137  Q
    ||||||||||||||||||||||||| |||||| ||||| |||||||||||   ||||| ||||||||||||| |||||||||||| |||||||| | | |    
T  9937274 atacttacctggatggggtcaatggatgatcatgaaggtccatggcctaggttggtgacctccattgcacttcggaggggtgcctatctaaggtgttctc 9937373  T
Q  138 aagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaatcttagtttaaatattttt 220  Q
    |||| |   ||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||  |||||||| |||||||    
T  9937374 aagtagaacagcctacatcatagtttgttgctgtgggggcctgcgttcgcgcggccccttccaataatagtttaattattttt 9937456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 36 - 199
Target Start/End: Original strand, 9939644 - 9939807
Alignment:
Q  36 acatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctac 135  Q
    ||||||||||||||||||||||||||| |||||| ||||| | |||||||||   ||||| ||||||||||||| ||||||||||||  ||||||| | |    
T  9939644 acatacttacctggatggggtcaatggatgatcatgaaggtctatggcctaggttggtgacctccattgcactttggaggggtgcctacctaaggtgttc 9939743  T
Q  136 ccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttc 199  Q
     ||||| |   | |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9939744 tcaagtagaacaacctacatcataatttgttgctgtgggggcctgcgttcgcgcggccctcttc 9939807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 38 - 196
Target Start/End: Original strand, 9945694 - 9945855
Alignment:
Q  38 atacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctaccc 137  Q
    |||||||||||||||||||||||||  ||||| ||||| | |||||||||   ||||| ||||||||||||| ||||||||| ||  ||||||| | | |    
T  9945694 atacttacctggatggggtcaatggacgatcatgaaggtctatggcctaggttggtgacctccattgcactttggaggggtgtctgcctaaggtgttctc 9945793  T
Q  138 aagtgg---tggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccc 196  Q
    |||| |    | ||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  9945794 aagtagaacagcagcctacattataatttgttgctgtgggggcctgcgttcgcgtggccccc 9945855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 177
Target Start/End: Complemental strand, 3428013 - 3427899
Alignment:
Q  63 gtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctacccaagtggtggagcctacatcataatt 162  Q
    |||||||||||||||||| | ||||    |||| ||||||||||| | ||||||||||     |||||||| ||||||||||||||  |||||| |||||    
T  3428013 gtgatcaagaaggcccatcgtctaggcgtgtgacctccattgcaccttggaggggtgctagcttaaggtctgcccaagtggtggagtttacatcgtaatt 3427914  T
Q  163 tgttgctgtgggggc 177  Q
    |||||| || |||||    
T  3427913 tgttgcagtaggggc 3427899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 36 - 195
Target Start/End: Original strand, 44089673 - 44089832
Alignment:
Q  36 acatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctac 135  Q
    |||||||||||||||||||||| ||| ||||||| |||||| ||||||||||   ||||| ||||||||||||| |||||||||||| |||||||| | |    
T  44089673 acatacttacctggatggggtctatgagtgatcatgaaggctcatggcctaggttggtgacctccattgcactttggaggggtgcctatctaaggtgttc 44089772  T
Q  136 ccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc 195  Q
     ||||| |   || ||||||||||||||||||||| ||||||||||||||||||||||||    
T  44089773 tcaagtagaacagtctacatcataatttgttgctgagggggcctgcgttcgcgcggcccc 44089832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 38052155 - 38052200
Alignment:
Q  149 cctacatcataatttgttgctgtgggggcctgcgttcgcgcggccc 194  Q
    ||||||| ||||||||||| ||||| ||||||||| ||||||||||    
T  38052155 cctacattataatttgttgttgtggaggcctgcgtgcgcgcggccc 38052200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 108 - 225
Target Start/End: Complemental strand, 7959702 - 7959585
Alignment:
Q  108 ttaggaggggtgcctttctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaatcttag 207  Q
    ||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| | || || |||    
T  7959702 ttaggaggggtgcctttttaaggtctatccaaatggtggagcctacatcataatttgttgctgtgggggtctgcgttcgcgcggccccttccagtcatag 7959603  T
Q  208 tttaaatatttttaagtt 225  Q
    ||||||| |||| |||||    
T  7959602 tttaaattttttgaagtt 7959585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 43924105 - 43924059
Alignment:
Q  40 acttacctggatggggtcaatgggtgatcaagaaggcccatggcctag 87  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  43924105 acttacctgaatggggtcaatgg-tgatcaagaaggcccatggcctag 43924059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 43924031 - 43923991
Alignment:
Q  126 taaggtctacccaagtggtggagcctacatcataatttgtt 166  Q
    |||||||||| ||||||||||||||||||| ||||||||||    
T  43924031 taaggtctactcaagtggtggagcctacattataatttgtt 43923991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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