View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14271_low_18 (Length: 350)
Name: NF14271_low_18
Description: NF14271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14271_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 22 - 255
Target Start/End: Complemental strand, 8390978 - 8390745
Alignment:
| Q |
22 |
gtttggaagaaattgaaagtatggaaggagaaattgataccatcagtaggtcatgaggttttgattaaatctgtgaatcaatccattttgacttatttta |
121 |
Q |
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| T |
8390978 |
gtttggaagaaattgaaagtatggaaggagaaaatgataccatcagtaggtcatgaggttctgattaaatctgtgaatcaatccattttgacttatttta |
8390879 |
T |
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| Q |
122 |
tcatgttatgagatgatttctcatatcgacaggcttgacttattctgatatattcaataaattagtcccaaagaaaaacttcatgcatattttaggcttg |
221 |
Q |
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| T |
8390878 |
tcatgttatgagatgatttctcatatcgacaggcttgacttattctgatatatttaataaattagtcccaaagagaaacttcatgcatattttaggcttg |
8390779 |
T |
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| Q |
222 |
tttagtgtttgacagatggaaatagctctaactg |
255 |
Q |
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| T |
8390778 |
tttagtgtttgacagatggaaatagctctaactg |
8390745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 331
Target Start/End: Complemental strand, 8390744 - 8390695
Alignment:
| Q |
282 |
attctccaaatgtgttgatagacaacttttgttgttggatttagtctctg |
331 |
Q |
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| T |
8390744 |
attctacaaatgtgttgataggcagcttttgttgttggatttagtctctg |
8390695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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