View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14271_low_21 (Length: 305)
Name: NF14271_low_21
Description: NF14271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14271_low_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 6 - 290
Target Start/End: Complemental strand, 40552681 - 40552397
Alignment:
| Q |
6 |
agatggacatcatctgaatagtatatgcggtctccctgctaatcattctgagcaatcttctgtggttccaaataaagatgttgggcaatcacacttaaat |
105 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40552681 |
agatgaacatcagctgaatagtatatgcggtctccccgctaatcattctgagcaatcttctgtggttccaaataaagatgttgggcaatcacacttaaat |
40552582 |
T |
|
| Q |
106 |
tcaaatcttgattcgcttacagccagcagagtaagagcacagtctgccaacccaagaaatttttcaactcctttggcgatgaatagtcatcctatccaat |
205 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
40552581 |
tcaaatcttgatttgcttacagccagcagagtaagagcacagtctgccaacccaagaaatttttcaattcctttggcgatgaaaagtcatcctatccaat |
40552482 |
T |
|
| Q |
206 |
ctataaccccttcaccttccagaagacttccacatttgtcccatgatattgaattcaaaagaatacaaaaaataatagagaaaac |
290 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40552481 |
ctaaaaccccttcaccttccagaagacttccacatttgtcccatgatattgaattcaaaagaatacaaaaaataatagagaaaac |
40552397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 110 - 252
Target Start/End: Complemental strand, 40570641 - 40570499
Alignment:
| Q |
110 |
atcttgattcgcttacagccagcagagtaagagcacagtctgccaacccaagaaatttttcaactcctttggcgatgaatagtcatcctatccaatctat |
209 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||| || | || ||||||||| |||| |||||||| |||||||| |||||| || ||||||| |
|
|
| T |
40570641 |
atcttgatttgcttacagccagtagagtaagagcacagtgtggctacagaagaaatttgtcaaatcctttggagatgaataatcatccaattcaatctac |
40570542 |
T |
|
| Q |
210 |
aaccccttcaccttccagaagacttccacatttgtcccatgat |
252 |
Q |
| |
|
| |||||||| |||||||||| |||| |||||||||| ||||| |
|
|
| T |
40570541 |
acccccttcatcttccagaaggcttcaacatttgtcctatgat |
40570499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 40570755 - 40570702
Alignment:
| Q |
47 |
atcattctgagcaatcttctgtggttccaaataaagatgttgggcaatcacact |
100 |
Q |
| |
|
|||||||||||| | |||||||||||||||| ||||||| |||||| ||||||| |
|
|
| T |
40570755 |
atcattctgagccaacttctgtggttccaaacaaagatgctgggcagtcacact |
40570702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University