View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14271_low_31 (Length: 244)
Name: NF14271_low_31
Description: NF14271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14271_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 108278 - 108054
Alignment:
| Q |
1 |
ttgcaacatctttcacatacacccatcccaaagtagaatttggaaatgtttgtgtacctgtat----caaggaagtgagagagctattatctgcacagca |
96 |
Q |
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| T |
108278 |
ttgcaacatctttcacatacacccatcccaaagtagaatttggaaatgtttgtgtacctgtatgtatcaaggaagtgagagagctattatctgca----- |
108184 |
T |
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| Q |
97 |
gaaggacaaaattttgtcctcttgaacacaaacatatttgaagcacatagaaactgctaatattcattgaaatagcaacagaatacaattcaataagcaa |
196 |
Q |
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| T |
108183 |
gaaggacaaaatcttgtcctcttgaacacaaacatatttgaagcacatagaaactgctaatattcattgaaatagcaacagaatacaattcaataatcaa |
108084 |
T |
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| Q |
197 |
caatggatgttggggaaaaatcgatgtcat |
226 |
Q |
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| T |
108083 |
caatggatgttggggaaaaatcgatgtcat |
108054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 89172 - 88978
Alignment:
| Q |
1 |
ttgcaacatctttcacatacacccatcccaaagtagaatttggaaatgtttgtgtacctgtatcaaggaagtgagagagct---attatctgcacagcag |
97 |
Q |
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| T |
89172 |
ttgcaacatctttcacattgacccatccaaaactagcatttggaaatgtctgtgcacctgtatcaaggaagtgaaagagcttctattatctaca-----g |
89078 |
T |
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| Q |
98 |
aaggacaaaattttgtcctcttgaacacaaacatatttgaagcacatagaaactgctaatattcattgaaatagcaacagaatacaattcaataagcaac |
197 |
Q |
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| T |
89077 |
aaggacaaaatcttgtcctcttgaacacaaacatatttgaagtacataaaaactgctaatattcattaaaataacaacaaaagagaacacaataagcaac |
88978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 2708131 - 2708065
Alignment:
| Q |
1 |
ttgcaacatctttcacatacacccatcccaaagtagaatttggaaatgtttgtgtacctgtatcaag |
67 |
Q |
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|||||||||||||||||| ||||||| ||| ||| |||| |||||||||||| |||||||||||| |
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| T |
2708131 |
ttgcaacatctttcacattgacccatcaaaaactagcatttcgaaatgtttgtgcacctgtatcaag |
2708065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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