View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14271_low_4 (Length: 529)

Name: NF14271_low_4
Description: NF14271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14271_low_4
NF14271_low_4
[»] chr1 (6 HSPs)
chr1 (378-519)||(49656922-49657063)
chr1 (220-357)||(49656790-49656927)
chr1 (1-129)||(49656654-49656782)
chr1 (173-220)||(23714691-23714739)
chr1 (135-205)||(39130770-39130840)
chr1 (173-205)||(7353496-7353528)
[»] chr6 (4 HSPs)
chr6 (175-217)||(7086821-7086865)
chr6 (101-205)||(7977833-7977937)
chr6 (175-205)||(9195757-9195787)
chr6 (175-225)||(32298593-32298640)
[»] chr8 (1 HSPs)
chr8 (175-225)||(33405370-33405417)
[»] chr5 (4 HSPs)
chr5 (173-205)||(36838567-36838599)
chr5 (175-205)||(14873543-14873573)
chr5 (176-205)||(11685966-11685995)
chr5 (176-205)||(16203798-16203827)
[»] chr7 (4 HSPs)
chr7 (175-205)||(7328694-7328724)
chr7 (175-205)||(15902848-15902878)
chr7 (175-205)||(18213036-18213066)
chr7 (138-225)||(22484014-22484098)
[»] chr2 (2 HSPs)
chr2 (175-205)||(34784985-34785015)
chr2 (173-221)||(40361744-40361789)
[»] chr4 (1 HSPs)
chr4 (175-225)||(35157971-35158018)
[»] chr3 (2 HSPs)
chr3 (175-225)||(8842355-8842402)
chr3 (175-225)||(40993321-40993368)


Alignment Details
Target: chr1 (Bit Score: 134; Significance: 2e-69; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 378 - 519
Target Start/End: Original strand, 49656922 - 49657063
Alignment:
Q  378 cacggacaaaaatcttatgaacctcttatattgaggttgacgatgtaagaaaatgatatcagttgtcaaagattaatattagtggtgccacctaccaatc 477  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  49656922 cacggacaaaaatcttatgaacctcttatattgaggttgacgatgtaagaaaatgacatcagttgtcaaagattaatattagtggtgccacctaccaatc 49657021  T
Q  478 accctcttgcttctcttttgctgaattatcaccgcaaatctg 519  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  49657022 accctcttgcttctcttttgctgaattatcaccacaaatctg 49657063  T

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Target: chr1; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 220 - 357
Target Start/End: Original strand, 49656790 - 49656927
Alignment:
Q  220 acatgtgggacatatctgatgcgatgagtgttcatacaattagtttcctcaaactttttctaattgatgattgcgatgaataaaccagttgctggaagaa 319  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49656790 acatgtgggacatatctgatgcgatgagtgttcatactcttagtttcctcaaactttttctaattgatgattgcgatgaataaaccagttgctggaagaa 49656889  T
Q  320 ataaagtatagaaaagcaaaaaggtttgcagccacgga 357  Q
    ||||||||||||||||||||||||||||||||||||||    
T  49656890 ataaagtatagaaaagcaaaaaggtttgcagccacgga 49656927  T

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Target: chr1; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 49656654 - 49656782
Alignment:
Q  1 gactcatttcattcattcatctcataactgcgcatatatgcattagtttgtcgacgatgtacgaaattgtctgctattttatctagctgacggtatgaaa 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| || |||||| ||| |||||||||||||||||||||||    
T  49656654 gactcatttcattcattcatctcataactgtgcatatatgcattagtttgtcaacgatgtacaaagttgtctactaatttatctagctgacggtatgaaa 49656753  T
Q  101 cacggatatggacacgaacatctgatacg 129  Q
    |||||||| |||||| |||||||||||||    
T  49656754 cacggatacggacacaaacatctgatacg 49656782  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 23714739 - 23714691
Alignment:
Q  173 ttacataatttagtgtaattatatgtgtcggt-ggtgtcagacacgaca 220  Q
    |||||||||| |||||||||||| |||||||| ||||||||||||||||    
T  23714739 ttacataattaagtgtaattatacgtgtcggtcggtgtcagacacgaca 23714691  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 205
Target Start/End: Complemental strand, 39130840 - 39130770
Alignment:
Q  135 gatactgacacgccgacacctttaataatttnnnnnnnttacataatttagtgtaattatatgtgtcggtg 205  Q
    |||| |||||||| |||||  ||||||||||       ||| |||||||||||||||||||||||||||||    
T  39130840 gatattgacacgctgacactattaataattttagaaaattatataatttagtgtaattatatgtgtcggtg 39130770  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 7353528 - 7353496
Alignment:
Q  173 ttacataatttagtgtaattatatgtgtcggtg 205  Q
    |||||||||||||||||||||||| ||||||||    
T  7353528 ttacataatttagtgtaattatatatgtcggtg 7353496  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 7086821 - 7086865
Alignment:
Q  175 acataatttagtgtaattatatgtgtcggtg--gtgtcagacacg 217  Q
    |||||||||||||||||||||||||||||||  ||||||||||||    
T  7086821 acataatttagtgtaattatatgtgtcggtgtagtgtcagacacg 7086865  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 205
Target Start/End: Complemental strand, 7977937 - 7977833
Alignment:
Q  101 cacggatatggacacgaacatctgatacgatattgatactgacacgccgacacctttaataatttnnnnnnnttacataatttagtgtaattatatgtgt 200  Q
    |||||||||||||||| |||   || |||| || |||||||||||||||||||   |||||||||       |||||||||| |||||||||| | ||||    
T  7977937 cacggatatggacacggacactggacacgacatggatactgacacgccgacacagctaataatttgaaaaaattacataattcagtgtaattacaagtgt 7977838  T
Q  201 cggtg 205  Q
    |||||    
T  7977837 cggtg 7977833  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 205
Target Start/End: Complemental strand, 9195787 - 9195757
Alignment:
Q  175 acataatttagtgtaattatatgtgtcggtg 205  Q
    |||||||||||||||||||||||||||||||    
T  9195787 acataatttagtgtaattatatgtgtcggtg 9195757  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 32298640 - 32298593
Alignment:
Q  175 acataatttagtgtaattatatgtgtcggtggtgtcagacacgacacatgt 225  Q
    ||||||||||||||||||||||||||   |||||||||||| |||| ||||    
T  32298640 acataatttagtgtaattatatgtgt---tggtgtcagacatgacatatgt 32298593  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 33405417 - 33405370
Alignment:
Q  175 acataatttagtgtaattatatgtgtcggtggtgtcagacacgacacatgt 225  Q
    |||||||||||||||||||||||||||   |||||| ||||||||||||||    
T  33405417 acataatttagtgtaattatatgtgtc---ggtgtcggacacgacacatgt 33405370  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 36838567 - 36838599
Alignment:
Q  173 ttacataatttagtgtaattatatgtgtcggtg 205  Q
    |||||||||||||||||||||||||||||||||    
T  36838567 ttacataatttagtgtaattatatgtgtcggtg 36838599  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 205
Target Start/End: Original strand, 14873543 - 14873573
Alignment:
Q  175 acataatttagtgtaattatatgtgtcggtg 205  Q
    |||||||||||||||||||||||||||||||    
T  14873543 acataatttagtgtaattatatgtgtcggtg 14873573  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 205
Target Start/End: Original strand, 11685966 - 11685995
Alignment:
Q  176 cataatttagtgtaattatatgtgtcggtg 205  Q
    ||||||||||||||||||||||||||||||    
T  11685966 cataatttagtgtaattatatgtgtcggtg 11685995  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 205
Target Start/End: Complemental strand, 16203827 - 16203798
Alignment:
Q  176 cataatttagtgtaattatatgtgtcggtg 205  Q
    ||||||||||||||||||||||||||||||    
T  16203827 cataatttagtgtaattatatgtgtcggtg 16203798  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 205
Target Start/End: Complemental strand, 7328724 - 7328694
Alignment:
Q  175 acataatttagtgtaattatatgtgtcggtg 205  Q
    |||||||||||||||||||||||||||||||    
T  7328724 acataatttagtgtaattatatgtgtcggtg 7328694  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 205
Target Start/End: Original strand, 15902848 - 15902878
Alignment:
Q  175 acataatttagtgtaattatatgtgtcggtg 205  Q
    |||||||||||||||||||||||||||||||    
T  15902848 acataatttagtgtaattatatgtgtcggtg 15902878  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 205
Target Start/End: Complemental strand, 18213066 - 18213036
Alignment:
Q  175 acataatttagtgtaattatatgtgtcggtg 205  Q
    |||||||||||||||||||||||||||||||    
T  18213066 acataatttagtgtaattatatgtgtcggtg 18213036  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 225
Target Start/End: Original strand, 22484014 - 22484098
Alignment:
Q  138 actgacacgccgacacctttaataatttnnnnnnnttacataatttagtgtaattatatgtgtcggtggtgtcagacacgacacatgt 225  Q
    |||||||||||||||||  |||||||||       || ||||||| ||| ||||||||||||||   ||||||||||| |||||||||    
T  22484014 actgacacgccgacaccgctaataattttagaaaattgcataattcagtataattatatgtgtc---ggtgtcagacatgacacatgt 22484098  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 205
Target Start/End: Complemental strand, 34785015 - 34784985
Alignment:
Q  175 acataatttagtgtaattatatgtgtcggtg 205  Q
    |||||||||||||||||||||||||||||||    
T  34785015 acataatttagtgtaattatatgtgtcggtg 34784985  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 40361789 - 40361744
Alignment:
Q  173 ttacataatttagtgtaattatatgtgtcggtggtgtcagacacgacac 221  Q
    |||||||||||||||||||||||| |||   ||||||||||||||||||    
T  40361789 ttacataatttagtgtaattatatctgt---tggtgtcagacacgacac 40361744  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 35158018 - 35157971
Alignment:
Q  175 acataatttagtgtaattatatgtgtcggtggtgtcagacacgacacatgt 225  Q
    ||||||||||||||||||||| |||||   |||||| ||||||||||||||    
T  35158018 acataatttagtgtaattataagtgtc---ggtgtctgacacgacacatgt 35157971  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 8842355 - 8842402
Alignment:
Q  175 acataatttagtgtaattatatgtgtcggtggtgtcagacacgacacatgt 225  Q
    ||||||||| |||||||||||| ||||   |||||||||||||||||||||    
T  8842355 acataatttggtgtaattatatatgtc---ggtgtcagacacgacacatgt 8842402  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 40993368 - 40993321
Alignment:
Q  175 acataatttagtgtaattatatgtgtcggtggtgtcagacacgacacatgt 225  Q
    |||||||| ||||||||||||||||||   |||||| ||||||||||||||    
T  40993368 acataattcagtgtaattatatgtgtc---ggtgtcggacacgacacatgt 40993321  T

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