View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14271_low_41 (Length: 213)
Name: NF14271_low_41
Description: NF14271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14271_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 2e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 25 - 182
Target Start/End: Complemental strand, 35313706 - 35313545
Alignment:
| Q |
25 |
gaatgggccatgtcaattgaaggagatgaaataagaattgtatttgagagcttacaaacatgttggtagttttgtagggcatgcacctctgtgaattt-- |
122 |
Q |
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| T |
35313706 |
gaatgggccatgttaattgaaggagatgaaataagaattgtatttgagagcttacaaacatgttggtagttttgtagggcatgcacctctgtgaatttta |
35313607 |
T |
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| Q |
123 |
--ttaatgaaaggaacgtaagttgctgttgaatccatgtgaatgaagaaacttttgtctctg |
182 |
Q |
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| T |
35313606 |
aattaatgaacggaacataagttgctgttgaatccatgtgaatgaagaaacttttgtctctg |
35313545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 66 - 182
Target Start/End: Complemental strand, 45176966 - 45176846
Alignment:
| Q |
66 |
atttgagagcttacaaacatgttggtagttttgtagggcatgcacctctgtgaattt----ttaatgaaaggaacgtaagttgctgttgaatccatgtga |
161 |
Q |
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| T |
45176966 |
atttgagagcttacaaacatgttggtagttttgtagggcatgcacctctgtgaattttaaattaatgaaaggaacataagttgctgttgaatccatgtga |
45176867 |
T |
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| Q |
162 |
atgaagaaacttttgtctctg |
182 |
Q |
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| T |
45176866 |
atgaagaaacttttgtctctg |
45176846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 27429989 - 27430039
Alignment:
| Q |
123 |
ttaatgaaaggaacgtaagttgctgttgaatccatgtgaatgaagaaactt |
173 |
Q |
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| T |
27429989 |
ttaatgaaaggaacattagttgatgttgaatccatgtgaatgaagaaactt |
27430039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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