View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14271_low_46 (Length: 203)

Name: NF14271_low_46
Description: NF14271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14271_low_46
NF14271_low_46
[»] chr5 (2 HSPs)
chr5 (14-77)||(43514227-43514290)
chr5 (142-187)||(43514355-43514400)
[»] chr4 (4 HSPs)
chr4 (14-77)||(11146702-11146765)
chr4 (14-77)||(44891972-44892035)
chr4 (142-187)||(11146830-11146875)
chr4 (142-187)||(44891862-44891907)
[»] chr1 (2 HSPs)
chr1 (14-77)||(26852849-26852912)
chr1 (142-187)||(26852977-26853022)


Alignment Details
Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 43514227 - 43514290
Alignment:
Q  14 aagaatatacggggatgaagatcaagcatgacataattttttattgaacacaaatattgacaga 77  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43514227 aagaagatatggggatgaagatcaagcatgacataattttttattgaacacaaatattgacaga 43514290  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 43514355 - 43514400
Alignment:
Q  142 gcaatgttgcgatctccaatttcattgtgagaaagacggtggaaaa 187  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  43514355 gcaatgttgcgatctccaatttcattgtgagaaagacggtgaaaaa 43514400  T

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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 11146702 - 11146765
Alignment:
Q  14 aagaatatacggggatgaagatcaagcatgacataattttttattgaacacaaatattgacaga 77  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11146702 aagaagatatggggatgaagatcaagcatgacataattttttattgaacacaaatattgacaga 11146765  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 44892035 - 44891972
Alignment:
Q  14 aagaatatacggggatgaagatcaagcatgacataattttttattgaacacaaatattgacaga 77  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44892035 aagaagatatggggatgaagatcaagcatgacataattttttattgaacacaaatattgacaga 44891972  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 11146830 - 11146875
Alignment:
Q  142 gcaatgttgcgatctccaatttcattgtgagaaagacggtggaaaa 187  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  11146830 gcaatgttgcgatctccaatttcattgtgagaaagacggtgaaaaa 11146875  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 44891907 - 44891862
Alignment:
Q  142 gcaatgttgcgatctccaatttcattgtgagaaagacggtggaaaa 187  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  44891907 gcaatgttgcgatctccaatttcattgtgagaaagacggtgaaaaa 44891862  T

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Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 26852849 - 26852912
Alignment:
Q  14 aagaatatacggggatgaagatcaagcatgacataattttttattgaacacaaatattgacaga 77  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26852849 aagaagatatggggatgaagatcaagcatgacataattttttattgaacacaaatattgacaga 26852912  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 26852977 - 26853022
Alignment:
Q  142 gcaatgttgcgatctccaatttcattgtgagaaagacggtggaaaa 187  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  26852977 gcaatgttgcgatctccaatttcattgtgagaaagacggtgaaaaa 26853022  T

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