View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14271_low_5 (Length: 475)
Name: NF14271_low_5
Description: NF14271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14271_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 79 - 456
Target Start/End: Complemental strand, 9575077 - 9574698
Alignment:
| Q |
79 |
ccacaatgggattctctcaaattattttgaccactctttatttatttatcaacatggcaatgacatcgtctatattcttttgtatgtggatgccattatt |
178 |
Q |
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| T |
9575077 |
ccacaatgggattctcttaaattattttgaccactctttatttatttatcaacatggcaatgacaccgtctatattcttttgtatgtggatgacatcatt |
9574978 |
T |
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| Q |
179 |
cttgccgcttcttctgactctctttatgaattgattatgtctaagcttaactttgaatttttcgtgaagtcatca--cccgtccagttatttttctttct |
276 |
Q |
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| T |
9574977 |
cttgccgcttcttctgactatctttatgaattgattatgtctaagcttaactttgaattttccatgaaggattgaggcccgtccagttatttttctttct |
9574878 |
T |
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| Q |
277 |
caaaataaatatgcagaggaagttattgagcacacatgtatgtctgctggcaagtcatcacccacacatgtgaatacaaaggcaaaactcagtggttctt |
376 |
Q |
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| T |
9574877 |
caaaataaatatgcagaggaagttattgagcacacatgtatgtctactggcaagtcatcacccatacatgtgaatacaaaggcaaaactcagtggttctt |
9574778 |
T |
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| Q |
377 |
caagaaactcctatgaagatccaacataatatcataacctcgcttgatctttgcaatacctgacatttacaagatcaaat |
456 |
Q |
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| T |
9574777 |
catgaaacccctatgaagatccaacataatatcatagcctcgcttgagcattgtagtacctgacatttacaagatcaaat |
9574698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 9575176 - 9575109
Alignment:
| Q |
15 |
atactcaactccctggccatgtctgtcttctaaaaaattctctccatggacttatacaagcaccccac |
82 |
Q |
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| T |
9575176 |
atactcaactccctggccatgtatgtcttctaaaaaattctctccatggacttatacaagcaccccac |
9575109 |
T |
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