View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14271_low_6 (Length: 470)
Name: NF14271_low_6
Description: NF14271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14271_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 14 - 457
Target Start/End: Complemental strand, 45787803 - 45787356
Alignment:
| Q |
14 |
cagagactgaaaattatatatacatctaaa-ttaaatcaagccctaaacctaaaccaattctaaattccaagaatcactttcttcagtcttgatagtttc |
112 |
Q |
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| T |
45787803 |
cagagactgaaaattatatatacatctaaaattaaatcaagccctaaacctaaaccaattctaaattccaagaatcactttcttcagtcttgatagtttc |
45787704 |
T |
|
| Q |
113 |
tactgaatacgatggatccatcatcttattcacgtaacaacaaatttcccagaccttcatcaatgagaaaacctcacctctacttcctcatcgctttcct |
212 |
Q |
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| T |
45787703 |
tactgaatacgatggatccatcatcttattcacgtaacaacaaatttcccagaccttcatcaatgagaaaacctcacctctacttcctcatcgctttcct |
45787604 |
T |
|
| Q |
213 |
ctgtgctgccttttatctcctaggcgcttatcaacaacgtgcttctttcacctccctcacgaaaaaagccatcgtaacatcaccatcatgcaccatc--- |
309 |
Q |
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| T |
45787603 |
ctgtgctgccttttatctcctaggcgcttatcaacaacgtgcttctttcacctccctcacgaaaaaagccatcataacatcaccatcatgcaccatccaa |
45787504 |
T |
|
| Q |
310 |
caagtcaataagcccaccctcgatttccaatctcaccataactcctccgataccatcatcgcactttcatccgaaacctttaacttccctcgttgtggcg |
409 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45787503 |
caagtcaataaacccaccctcgatttccaatctcaccataactcctccgataccatcatcgcactttcatccgaaacctttaacttccctcgttgtggcg |
45787404 |
T |
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| Q |
410 |
tgaatttcacagaatacacaccatgtgaggatccgacgagatcattga |
457 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
45787403 |
tgaatttcacagaatacacaccatgtgaggatccgactagatctttga |
45787356 |
T |
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