View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14271_low_7 (Length: 467)
Name: NF14271_low_7
Description: NF14271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14271_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 3 - 451
Target Start/End: Complemental strand, 33452753 - 33452311
Alignment:
| Q |
3 |
ttatcaattccccagaccaattccaatatcgaaaactattacatgatctaaaacaaagattaaaaacaaaaagttgtatatttacatagattcagttatt |
102 |
Q |
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| T |
33452753 |
ttatcaattccccagaccaattccaatatcgaaaactattacatgatctaaaacaaagattaaaaacaaaaagttgtatatttacatagattcagttatt |
33452654 |
T |
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| Q |
103 |
atagaaaacaaattttccgtgactaaaagtaaaacatgtggtgaatgtatattattacttcatcatacacttcattccattttactacacagaaaataaa |
202 |
Q |
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| T |
33452653 |
atagaaaacaaattttccgtgactaaaagtaaaacatgtggtgaatgtat--taat-cttcatcatacacttcattccattttactacacagaaaataaa |
33452557 |
T |
|
| Q |
203 |
ataacctcttcactatcatggggccattgagcttgactattatgtagaactaattgtggcaggtaatttgcacccgaaaagaaataaattgtggtaggta |
302 |
Q |
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| T |
33452556 |
ataacctcttcactatcatggggccattgagcttgactattatgtcgaactaattgtggcaggtaatttgcacccgaaaagaaataaattgtggtaggta |
33452457 |
T |
|
| Q |
303 |
atgcttgtttaataaagtcaaattatagctttatcatagacttctaaccattttctttaaaccgaagatcttgaatattccaataattggataattgttt |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33452456 |
atgcttgtttaataaagtcaaattatagctttatcatagacttctaaccattttctttaaaccgaagatcttgaatattccaataattggataattgttt |
33452357 |
T |
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| Q |
403 |
tacctctgnnnnnnnnncttcatcttcatgcatttttatcattgtaagt |
451 |
Q |
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| T |
33452356 |
tacctctgttttttt---ttcatcttcatgcatttttatcattgtaagt |
33452311 |
T |
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