View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14272_high_11 (Length: 234)
Name: NF14272_high_11
Description: NF14272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14272_high_11 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 39297883 - 39298105
Alignment:
| Q |
16 |
caacaactccacaaaagaaaactcaaaacattggacttgcacttacagctaataagcttaacacattactaaacatat----ccatgtaatttagaaaac |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
39297883 |
caacaactccacaaaagaaaactcaaaacattggacttgcacttacagctaataagcttaacacattactaaacatatatatccatggaatttagaaaac |
39297982 |
T |
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| Q |
112 |
attctttgatgctggatggccttcatgtttggcacgaccacttgagtgagactctgacccaatattcttccttgactcatgtactacttcatcatcctca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
39297983 |
attctttgatgctggatggccttcatgtttggcacgaccacttgagtgagactctgacccaatattcttccttgactcatctaatacttcatcatcctca |
39298082 |
T |
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| Q |
212 |
ccaacaacaatgactttagttgt |
234 |
Q |
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||||||||||||||||||||||| |
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| T |
39298083 |
ccaacaacaatgactttagttgt |
39298105 |
T |
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