View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14272_high_13 (Length: 203)
Name: NF14272_high_13
Description: NF14272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14272_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 9e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 28880699 - 28880519
Alignment:
| Q |
1 |
ttgtaaatttgtctaattttctcttttnnnnnnnntgttattaaatagaagatctctataaat---attcaatccttacaaaataaaatcacaattttta |
97 |
Q |
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| T |
28880699 |
ttgtaaatttgtctaattttctcttttaaaaaaa-tgttattaaataaaagatttctataaatgttattcaatccttacaaaataaaatcacaattttta |
28880601 |
T |
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| Q |
98 |
atacattttctttagcattttagggataaaatgttgatggaaattgtataagactaaaaatgttgatgaaaaattatacaac |
179 |
Q |
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| T |
28880600 |
atacattttctttagcattttagggataaaatgttgatggaaattgtataagactaaaaatattgatgaaaaattatacaac |
28880519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 172
Target Start/End: Complemental strand, 31410682 - 31410634
Alignment:
| Q |
125 |
aaaatgttgatggaaattgtataag-actaaaaatgttgatgaaaaatt |
172 |
Q |
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| T |
31410682 |
aaaatgctgatggaaaatttataaggactaaaaatgttgatgaaaaatt |
31410634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 172
Target Start/End: Complemental strand, 28750236 - 28750171
Alignment:
| Q |
111 |
agcattttagggat--aaaatgttgatggaaa--ttgtataagactaaaaatgttgatgaaaaatt |
172 |
Q |
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||||||||||||| |||||||||||||||| || |||| |||||||||||||||||||||||| |
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| T |
28750236 |
agcattttagggactaaaaatgttgatggaaaaattttataggactaaaaatgttgatgaaaaatt |
28750171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 142
Target Start/End: Complemental strand, 8877080 - 8877040
Alignment:
| Q |
103 |
ttttctttagcattttagggat-aaaatgttgatggaaatt |
142 |
Q |
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| T |
8877080 |
ttttcttaagcattttagggataaaaatgttgatggaaatt |
8877040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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