View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14272_high_2 (Length: 669)
Name: NF14272_high_2
Description: NF14272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14272_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 30 - 298
Target Start/End: Original strand, 48018141 - 48018405
Alignment:
| Q |
30 |
atatatattatttttacaatgagaatgtatatagtaaaattgtatgtatgagaaataaaccttccagatgagtatggtgatgtcaaattgcttggcatta |
129 |
Q |
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| T |
48018141 |
atatatattatttttacaatgaaaatgtatatagtaaaattgtatgtatgagaaataaaccttccagatgagtatggtgatgtcaaattgcttggcatta |
48018240 |
T |
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| Q |
130 |
taagaagagagaggagaaatggaagctccaatggctatcttgctatttgtttgaacaaaaccagcacaaagaaggttgtagcatccagttgcttgatatg |
229 |
Q |
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| T |
48018241 |
taagaagagagaggagaaatggaagctccaatggctatcttgctatttgtttgaacaaaaccagcacaaagaaggttgtagcatccagttgcttgatatg |
48018340 |
T |
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| Q |
230 |
tgtcactctgcgtgcttataattaaattgtttaatcaacaagaattttaacgagtaaaattagagaata |
298 |
Q |
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| T |
48018341 |
tgtcactctgcgtgctta----taaattgtttaatcaacaagaattttaacgagtaaaattagagaata |
48018405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 392 - 528
Target Start/End: Original strand, 48018468 - 48018608
Alignment:
| Q |
392 |
ctaaccgtccagtaagtaaataatctgggtctgctgtcaccataaagctccggactgacctaactagtgcaattatcaaaagcttcagaataatg----n |
487 |
Q |
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| T |
48018468 |
ctaaccgtccagtaagtaaataatctgggtctgctgtcaccataaagctccggactgacctaactagtgcaattatcaaaagcttcagaataatgttttt |
48018567 |
T |
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| Q |
488 |
nnnnnnnatttgaatttcttcatatcgaataatgtttcttc |
528 |
Q |
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| T |
48018568 |
ttttttaatttgaatttcttcatatcgaataatgtttcttc |
48018608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 621 - 659
Target Start/End: Original strand, 48018809 - 48018847
Alignment:
| Q |
621 |
ttactataatctgaaattgaaaattggagtttagaataa |
659 |
Q |
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| T |
48018809 |
ttactataatctgaaattgaaaattggagtttagaataa |
48018847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 88 - 240
Target Start/End: Complemental strand, 35409350 - 35409198
Alignment:
| Q |
88 |
accttccagatgagtatggtgatgtcaaattgcttggcattataagaagagagaggagaaatggaagctccaatggctatcttgctatttgtttgaacaa |
187 |
Q |
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| T |
35409350 |
accttccaaatgaggattgaaatgtcatattggttgccagtataagaagagacaggagatatggcagctccaatagctattttactatttgtttgaataa |
35409251 |
T |
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| Q |
188 |
aaccagcacaaagaaggttgtagcatccagttgcttgatatgtgtcactctgc |
240 |
Q |
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| T |
35409250 |
aaccagcacaaagaagattgtaacatccggttgcttgataagagtcactctgc |
35409198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 395 - 457
Target Start/End: Complemental strand, 35408719 - 35408657
Alignment:
| Q |
395 |
accgtccagtaagtaaataatctgggtctgctgtcaccataaagctccggactgacctaacta |
457 |
Q |
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| T |
35408719 |
accgtccaatacgtgaataatctgggtctgttgtcaccataaagctccggactgacctgacta |
35408657 |
T |
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