View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14272_high_4 (Length: 407)

Name: NF14272_high_4
Description: NF14272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14272_high_4
NF14272_high_4
[»] chr3 (7 HSPs)
chr3 (65-374)||(28880118-28880433)
chr3 (252-318)||(27007861-27007926)
chr3 (1-46)||(28880421-28880466)
chr3 (226-318)||(31142998-31143089)
chr3 (256-318)||(47183891-47183953)
chr3 (186-231)||(55159997-55160042)
chr3 (278-311)||(55160095-55160128)
[»] chr4 (8 HSPs)
chr4 (251-318)||(29172320-29172386)
chr4 (222-318)||(31742632-31742728)
chr4 (249-318)||(51480662-51480731)
chr4 (251-311)||(37149486-37149545)
chr4 (184-230)||(41038925-41038971)
chr4 (274-319)||(8306214-8306259)
chr4 (177-214)||(29172240-29172277)
chr4 (251-279)||(10519416-10519444)
[»] chr8 (4 HSPs)
chr8 (252-318)||(24335165-24335230)
chr8 (257-318)||(4756633-4756694)
chr8 (233-318)||(6911889-6911973)
chr8 (227-311)||(31873737-31873821)
[»] chr2 (2 HSPs)
chr2 (265-319)||(41695127-41695181)
chr2 (227-285)||(10673887-10673945)
[»] chr1 (7 HSPs)
chr1 (225-288)||(52293890-52293952)
chr1 (177-231)||(28055746-28055800)
chr1 (251-318)||(33610344-33610410)
chr1 (268-318)||(26507035-26507085)
chr1 (251-292)||(5522001-5522041)
chr1 (257-318)||(9938026-9938086)
chr1 (170-230)||(33720010-33720070)
[»] chr5 (8 HSPs)
chr5 (251-309)||(35313060-35313118)
chr5 (260-311)||(34445016-34445066)
chr5 (177-223)||(11562686-11562732)
chr5 (170-231)||(7948861-7948922)
chr5 (265-318)||(14023343-14023396)
chr5 (251-288)||(34222311-34222348)
chr5 (183-223)||(11539204-11539244)
chr5 (256-308)||(31880879-31880931)
[»] chr7 (2 HSPs)
chr7 (251-319)||(37537081-37537149)
chr7 (257-318)||(37534008-37534069)
[»] chr6 (1 HSPs)
chr6 (251-331)||(19047492-19047572)


Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 65 - 374
Target Start/End: Complemental strand, 28880433 - 28880118
Alignment:
Q  65 tataggggtcatttacttaattaaccctgtaataaatcaaacaggtaattgtcnnnnnnnnnnnttgaatggtaaaaatagtggaaaaataccttttttg 164  Q
    ||||||| |||||||||||||||||||| |||||||| || ||||||||||||           ||||||||||||||||||||||||||| ||||||||    
T  28880433 tatagggatcatttacttaattaaccctttaataaattaatcaggtaattgtcgaaaaaaaa--ttgaatggtaaaaatagtggaaaaatatcttttttg 28880336  T
Q  165 ttttgataggcgaaatgcctcttttggttttttaagtttgacaaaaatataaggttagttctttaagatgttaatttaatgattcgttactcttttaagg 264  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28880335 ttttgataggcaaaatgcctcttttggttttttaagtttgacaaaaatataaggttagttctttaagatgttaatttaatgattcgttactctcttaagg 28880236  T
Q  265 acctatttgaaactttaaaaactttaaatagatggattaaattaacagcttaaatacacatttgaaatgcaa--------aaaagaaacttaaaggaata 356  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||        |||| |||||||||||||||    
T  28880235 acctatttgaaactttaaaaacttcaaatagatagattaaattaacagcttaaatacacatttgaaatgcaaaaaaaaaaaaaaaaaacttaaaggaata 28880136  T
Q  357 tttgatacttaaaattaa 374  Q
    ||||||||||||||||||    
T  28880135 tttgatacttaaaattaa 28880118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 27007926 - 27007861
Alignment:
Q  252 tactcttttaaggacctatttgaaactttaaaaactttaaatagatggattaaattaacagcttaaa 318  Q
    |||||||||||||||||||||||||| |||||||||| |||||| || |||||||||||| ||||||    
T  27007926 tactcttttaaggacctatttgaaac-ttaaaaacttcaaataggtgtattaaattaacaacttaaa 27007861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 28880466 - 28880421
Alignment:
Q  1 tttgtatggattaaaaacggaatcctgaatatctatagagatcatt 46  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||    
T  28880466 tttgtacggattaaaaacggaatcctgaatatctatagggatcatt 28880421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 318
Target Start/End: Complemental strand, 31143089 - 31142998
Alignment:
Q  226 tttaagatgttaatttaatgattcgttactcttttaaggacctatttgaaactttaaaaactttaaatagatggattaaattaacagcttaaa 318  Q
    |||||| |||||||||||||    ||||| |||||||| ||||||||||||| ||||||||||   |||||||  | ||||||||||||||||    
T  31143089 tttaagttgttaatttaatgtactgttacccttttaagaacctatttgaaac-ttaaaaacttctgatagatgtgtgaaattaacagcttaaa 31142998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 318
Target Start/End: Original strand, 47183891 - 47183953
Alignment:
Q  256 cttttaaggacctatttgaaactttaaaaactttaaatagatggattaaattaacagcttaaa 318  Q
    |||||||  ||||||||||||||| |||||||| |||||  || |||||||||||| ||||||    
T  47183891 cttttaaaaacctatttgaaacttaaaaaacttcaaatatgtgtattaaattaacaacttaaa 47183953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 55159997 - 55160042
Alignment:
Q  186 ttttggttttttaagtttgacaaaaatataaggttagttctttaag 231  Q
    |||||||| |||||||||||||||||||| || |||||| ||||||    
T  55159997 ttttggttatttaagtttgacaaaaatattagattagttttttaag 55160042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 311
Target Start/End: Original strand, 55160095 - 55160128
Alignment:
Q  278 tttaaaaactttaaatagatggattaaattaaca 311  Q
    ||||||||||||||||||||| ||||||||||||    
T  55160095 tttaaaaactttaaatagatgcattaaattaaca 55160128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 251 - 318
Target Start/End: Original strand, 29172320 - 29172386
Alignment:
Q  251 ttactcttttaaggacctatttgaaactttaaaaactttaaatagatggattaaattaacagcttaaa 318  Q
    |||| |||||||||||||||||||||||| |||||||| |||||| || |||||||||||||||||||    
T  29172320 ttacccttttaaggacctatttgaaactt-aaaaacttcaaatagttgcattaaattaacagcttaaa 29172386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 222 - 318
Target Start/End: Complemental strand, 31742728 - 31742632
Alignment:
Q  222 gttctttaagatgttaatttaatgattcgttactcttttaaggacctatttgaaactttaaaaactttaaatagatggattaaattaacagcttaaa 318  Q
    |||||||||  |||||||||||||   |||||| ||  |||||||||||||||||||| |||||||| |||| | || |||||||||||| ||||||    
T  31742728 gttctttaatttgttaatttaatgcaccgttaccctcataaggacctatttgaaacttaaaaaacttcaaattggtgcattaaattaacaacttaaa 31742632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 249 - 318
Target Start/End: Complemental strand, 51480731 - 51480662
Alignment:
Q  249 cgttactcttttaaggacctatttgaaactttaaaaactttaaatagatggattaaattaacagcttaaa 318  Q
    |||||| |||||||||||||||||||||||| ||||| || |||||| || ||| || ||||| ||||||    
T  51480731 cgttacccttttaaggacctatttgaaacttaaaaaatttcaaataggtgcattgaagtaacaacttaaa 51480662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 311
Target Start/End: Complemental strand, 37149545 - 37149486
Alignment:
Q  251 ttactcttttaaggacctatttgaaactttaaaaactttaaatagatggattaaattaaca 311  Q
    |||| ||||||||||| |||||||||| | |||||||| ||||||||| ||||||||||||    
T  37149545 ttacccttttaaggacatatttgaaacat-aaaaacttcaaatagatgaattaaattaaca 37149486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 230
Target Start/End: Complemental strand, 41038971 - 41038925
Alignment:
Q  184 tcttttggttttttaagtttgacaaaaatataaggttagttctttaa 230  Q
    |||||||||| ||||||||||||||||| || |||||||| ||||||    
T  41038971 tcttttggttctttaagtttgacaaaaacattaggttagtcctttaa 41038925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 319
Target Start/End: Original strand, 8306214 - 8306259
Alignment:
Q  274 aaactttaaaaactttaaatagatggattaaattaacagcttaaat 319  Q
    |||||| |||||||||||||||||| ||| |||||||| |||||||    
T  8306214 aaacttaaaaaactttaaatagatgtatttaattaacaacttaaat 8306259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 29172240 - 29172277
Alignment:
Q  177 aaatgcctcttttggttttttaagtttgacaaaaatat 214  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  29172240 aaatacctcttttggttctttaagtttgacaaaaatat 29172277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 279
Target Start/End: Original strand, 10519416 - 10519444
Alignment:
Q  251 ttactcttttaaggacctatttgaaactt 279  Q
    |||||||||||||||||||||||||||||    
T  10519416 ttactcttttaaggacctatttgaaactt 10519444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 318
Target Start/End: Original strand, 24335165 - 24335230
Alignment:
Q  252 tactcttttaaggacctatttgaaactttaaaaactttaaatagatggattaaattaacagcttaaa 318  Q
    ||||||||||||||||||||| |||| |||| ||||||||||||||| |||||||||| | ||||||    
T  24335165 tactcttttaaggacctatttaaaac-ttaagaactttaaatagatgcattaaattaataacttaaa 24335230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 318
Target Start/End: Original strand, 4756633 - 4756694
Alignment:
Q  257 ttttaaggacctatttgaaactttaaaaactttaaatagatggattaaattaacagcttaaa 318  Q
    |||||||||  |||||||||||| ||||||||| |||||||| |||||||||||| ||||||    
T  4756633 ttttaaggatttatttgaaacttaaaaaacttttaatagatgtattaaattaacaacttaaa 4756694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 318
Target Start/End: Original strand, 6911889 - 6911973
Alignment:
Q  233 tgttaatttaatgattcgttactcttttaaggacctatttgaaactttaaaaactttaaatagatggattaaattaacagcttaaa 318  Q
    |||||||||||||   |||||| |||||||||||||||||||||| ||  |||||| |||||| || |||||| ||||| ||||||    
T  6911889 tgttaatttaatgcaccgttacccttttaaggacctatttgaaac-ttgtaaacttcaaataggtgcattaaaataacaacttaaa 6911973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 311
Target Start/End: Original strand, 31873737 - 31873821
Alignment:
Q  227 ttaagatgttaatttaatgattcgttactcttttaaggacctatttgaaactttaaaaactttaaatagatggattaaattaaca 311  Q
    ||||| |||||||||||||  | ||||| ||||| |   | |||||||||||| ||||||||||||||| || ||| ||||||||    
T  31873737 ttaagttgttaatttaatgcattgttaccctttttaaagcttatttgaaacttaaaaaactttaaataggtgcattgaattaaca 31873821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 265 - 319
Target Start/End: Complemental strand, 41695181 - 41695127
Alignment:
Q  265 acctatttgaaactttaaaaactttaaatagatggattaaattaacagcttaaat 319  Q
    |||||||||||||||||||||||| |||||| || |||||||||||| |||||||    
T  41695181 acctatttgaaactttaaaaacttcaaataggtgcattaaattaacaacttaaat 41695127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 10673945 - 10673887
Alignment:
Q  227 ttaagatgttaatttaatgattcgttactcttttaaggacctatttgaaactttaaaaa 285  Q
    ||||| ||||||||||||    |||||| |||||||||||||||||||||||| |||||    
T  10673945 ttaagttgttaatttaatacgccgttacccttttaaggacctatttgaaacttaaaaaa 10673887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 225 - 288
Target Start/End: Complemental strand, 52293952 - 52293890
Alignment:
Q  225 ctttaagatgttaatttaatgattcgttactcttttaaggacctatttgaaactttaaaaactt 288  Q
    ||||||| |||||||||||||  ||||||| || |||||||||||||||||| |||||||||||    
T  52293952 ctttaagttgttaatttaatgcatcgttaccctcttaaggacctatttgaaa-tttaaaaactt 52293890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 28055746 - 28055800
Alignment:
Q  177 aaatgcctcttttggttttttaagtttgacaaaaatataaggttagttctttaag 231  Q
    |||| |||||||||||| |||||||||||||||||||  |||||||| |||||||    
T  28055746 aaatacctcttttggttctttaagtttgacaaaaataccaggttagtcctttaag 28055800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 251 - 318
Target Start/End: Original strand, 33610344 - 33610410
Alignment:
Q  251 ttactcttttaaggacctatttgaaactttaaaaactttaaatagatggattaaattaacagcttaaa 318  Q
    |||| ||||||||||| ||||| |||| | ||||||||||||||| || |||||||||||| ||||||    
T  33610344 ttacccttttaaggacttatttaaaacat-aaaaactttaaataggtgcattaaattaacaacttaaa 33610410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 318
Target Start/End: Complemental strand, 26507085 - 26507035
Alignment:
Q  268 tatttgaaactttaaaaactttaaatagatggattaaattaacagcttaaa 318  Q
    |||||||||||| |||||||| |||||||||  ||||||||||| ||||||    
T  26507085 tatttgaaacttaaaaaacttcaaatagatgctttaaattaacaacttaaa 26507035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 5522041 - 5522001
Alignment:
Q  251 ttactcttttaaggacctatttgaaactttaaaaactttaaa 292  Q
    |||| |||||||||||||||||||||| ||||||||||||||    
T  5522041 ttacccttttaaggacctatttgaaac-ttaaaaactttaaa 5522001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 318
Target Start/End: Complemental strand, 9938086 - 9938026
Alignment:
Q  257 ttttaaggacctatttgaaactttaaaaactttaaatagatggattaaattaacagcttaaa 318  Q
    ||||||||| |||||| |||||| ||||||||||||||| || | |||||||||| ||||||    
T  9938086 ttttaaggatctatttaaaactt-aaaaactttaaataggtgcactaaattaacaacttaaa 9938026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 33720070 - 33720010
Alignment:
Q  170 ataggcgaaatgcctcttttggttttttaagtttgacaaaaatataaggttagttctttaa 230  Q
    |||||| |||| |||||||||||  |||||||| ||||||||||| |  ||||||||||||    
T  33720070 ataggctaaatacctcttttggtcctttaagttcgacaaaaatatcaaattagttctttaa 33720010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 309
Target Start/End: Original strand, 35313060 - 35313118
Alignment:
Q  251 ttactcttttaaggacctatttgaaactttaaaaactttaaatagatggattaaattaa 309  Q
    ||||||||||||||| | ||||||||||| ||||||||||||||  || ||||||||||    
T  35313060 ttactcttttaaggatcaatttgaaacttaaaaaactttaaatatgtgcattaaattaa 35313118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 260 - 311
Target Start/End: Original strand, 34445016 - 34445066
Alignment:
Q  260 taaggacctatttgaaactttaaaaactttaaatagatggattaaattaaca 311  Q
    |||||||||||||||||| ||||||||||||||||  || ||||||||||||    
T  34445016 taaggacctatttgaaac-ttaaaaactttaaatatgtgaattaaattaaca 34445066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 11562732 - 11562686
Alignment:
Q  177 aaatgcctcttttggttttttaagtttgacaaaaatataaggttagt 223  Q
    |||| |||||||||||  ||||||||||||||||||||| |||||||    
T  11562732 aaatacctcttttggtggtttaagtttgacaaaaatatagggttagt 11562686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 7948922 - 7948861
Alignment:
Q  170 ataggcgaaatgcctcttttggttttttaagtttgacaaaaatataaggttagttctttaag 231  Q
    ||||| ||||| ||||||||| || ||||| |||||||||||||||  ||||||| ||||||    
T  7948922 ataggtgaaatacctcttttgattctttaaatttgacaaaaatatacagttagttgtttaag 7948861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 318
Target Start/End: Original strand, 14023343 - 14023396
Alignment:
Q  265 acctatttgaaactttaaaaactttaaatagatggattaaattaacagcttaaa 318  Q
    ||||||||||||||| |||||||| ||||| ||| |||||||||| | ||||||    
T  14023343 acctatttgaaacttaaaaaacttcaaataaatgcattaaattaataacttaaa 14023396  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 288
Target Start/End: Original strand, 34222311 - 34222348
Alignment:
Q  251 ttactcttttaaggacctatttgaaactttaaaaactt 288  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  34222311 ttacccttttaaggacctatttgaaacttaaaaaactt 34222348  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 11539244 - 11539204
Alignment:
Q  183 ctcttttggttttttaagtttgacaaaaatataaggttagt 223  Q
    ||||||||||  ||||||||||||||||||||| |||||||    
T  11539244 ctcttttggtggtttaagtttgacaaaaatatagggttagt 11539204  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 308
Target Start/End: Original strand, 31880879 - 31880931
Alignment:
Q  256 cttttaaggacctatttgaaactttaaaaactttaaatagatggattaaatta 308  Q
    |||||||||||||||||||| ||| |||||||| |||||| || ||| |||||    
T  31880879 cttttaaggacctatttgaatcttaaaaaacttcaaataggtgcattgaatta 31880931  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 319
Target Start/End: Complemental strand, 37537149 - 37537081
Alignment:
Q  251 ttactcttttaaggacctatttgaaactttaaaaactttaaatagatggattaaattaacagcttaaat 319  Q
    ||||| ||||||  ||||||||||| ||||||||||||| ||||  || |||||||||||| |||||||    
T  37537149 ttactgttttaaacacctatttgaatctttaaaaactttgaatatgtgtattaaattaacaacttaaat 37537081  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 318
Target Start/End: Complemental strand, 37534069 - 37534008
Alignment:
Q  257 ttttaaggacctatttgaaactttaaaaactttaaatagatggattaaattaacagcttaaa 318  Q
    |||||||||||||||| || ||| ||||||||  ||||| || |||||||||||||| ||||    
T  37534069 ttttaaggacctatttaaagcttaaaaaacttcgaataggtgcattaaattaacagcataaa 37534008  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 331
Target Start/End: Original strand, 19047492 - 19047572
Alignment:
Q  251 ttactcttttaaggacctatttgaaactttaaaaactttaaatagatggattaaattaacagcttaaatacacatttgaaa 331  Q
    ||||| ||||||| | ||||||||||||| ||| ||||  |||||||| |||||||||| | |||||| ||| ||||||||    
T  19047492 ttacttttttaagaatctatttgaaacttaaaatacttctaatagatgcattaaattaataacttaaaaacatatttgaaa 19047572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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