View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14272_low_1 (Length: 796)

Name: NF14272_low_1
Description: NF14272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14272_low_1
NF14272_low_1
[»] chr8 (15 HSPs)
chr8 (1-778)||(10682732-10683509)
chr8 (36-144)||(44912966-44913074)
chr8 (319-668)||(200452-200801)
chr8 (319-668)||(315289-315638)
chr8 (319-668)||(30408571-30408920)
chr8 (319-668)||(43810251-43810600)
chr8 (6-144)||(43811260-43811398)
chr8 (6-144)||(201461-201599)
chr8 (6-144)||(316298-316436)
chr8 (6-144)||(30409580-30409718)
chr8 (319-696)||(1288364-1288743)
chr8 (487-668)||(41947023-41947204)
chr8 (6-93)||(28647153-28647240)
chr8 (6-144)||(1287569-1287707)
chr8 (6-93)||(41946058-41946145)
[»] chr5 (19 HSPs)
chr5 (311-534)||(30048864-30049087)
chr5 (20-225)||(16598070-16598275)
chr5 (321-668)||(40370015-40370362)
chr5 (594-777)||(30049134-30049318)
chr5 (487-668)||(16795877-16796058)
chr5 (487-668)||(12020497-12020678)
chr5 (487-668)||(30697004-30697185)
chr5 (319-668)||(7102142-7102491)
chr5 (6-144)||(12019531-12019669)
chr5 (6-144)||(37659469-37659607)
chr5 (487-668)||(37679244-37679425)
chr5 (6-93)||(10275279-10275366)
chr5 (6-144)||(7103151-7103289)
chr5 (6-144)||(16794911-16795049)
chr5 (8-225)||(30048062-30048276)
chr5 (41-144)||(40371024-40371127)
chr5 (487-580)||(10276232-10276325)
chr5 (6-144)||(30696038-30696176)
chr5 (319-433)||(16795709-16795823)
[»] chr2 (10 HSPs)
chr2 (487-668)||(36672259-36672440)
chr2 (487-668)||(8052600-8052781)
chr2 (6-144)||(8051634-8051772)
chr2 (6-144)||(36671293-36671431)
chr2 (487-580)||(13269387-13269480)
chr2 (487-668)||(35953200-35953381)
chr2 (6-91)||(13270358-13270443)
chr2 (24-93)||(35953920-35953989)
chr2 (319-433)||(8052432-8052546)
chr2 (319-433)||(36672091-36672205)
[»] scaffold0044 (2 HSPs)
scaffold0044 (319-668)||(47633-47982)
scaffold0044 (6-144)||(48642-48780)
[»] chr7 (5 HSPs)
chr7 (487-668)||(7942851-7943032)
chr7 (487-668)||(27758605-27758786)
chr7 (6-144)||(7943860-7943998)
chr7 (9-249)||(730353-730593)
chr7 (6-144)||(27757639-27757777)
[»] chr6 (9 HSPs)
chr6 (319-668)||(8318272-8318621)
chr6 (321-676)||(17889388-17889745)
chr6 (6-144)||(8319281-8319419)
chr6 (487-543)||(17161303-17161359)
chr6 (6-98)||(17160335-17160427)
chr6 (306-534)||(23255071-23255299)
chr6 (321-668)||(27570500-27570847)
chr6 (6-144)||(17881256-17881394)
chr6 (6-90)||(27571563-27571647)
[»] chr4 (9 HSPs)
chr4 (487-668)||(44148766-44148947)
chr4 (6-144)||(44147800-44147938)
chr4 (8-271)||(20290246-20290509)
chr4 (6-91)||(31355421-31355506)
chr4 (488-668)||(31356371-31356551)
chr4 (496-762)||(27187853-27188119)
chr4 (6-93)||(43683007-43683094)
chr4 (6-144)||(27186881-27187019)
chr4 (319-433)||(44148598-44148712)
[»] chr3 (12 HSPs)
chr3 (487-668)||(21848831-21849012)
chr3 (6-144)||(43548457-43548595)
chr3 (319-668)||(54170112-54170461)
chr3 (26-144)||(22931084-22931202)
chr3 (6-144)||(54171121-54171259)
chr3 (470-580)||(22930162-22930272)
chr3 (6-93)||(21847870-21847957)
chr3 (496-762)||(9699296-9699562)
chr3 (487-696)||(43551500-43551710)
chr3 (6-144)||(756564-756702)
chr3 (6-144)||(9698323-9698461)
chr3 (470-587)||(2682247-2682364)
[»] chr1 (7 HSPs)
chr1 (487-668)||(26313221-26313402)
chr1 (487-668)||(39795603-39795784)
chr1 (6-144)||(39794637-39794775)
chr1 (6-144)||(26312255-26312393)
chr1 (208-271)||(36617812-36617875)
chr1 (319-433)||(26313053-26313167)
chr1 (319-433)||(39795435-39795549)
[»] scaffold0027 (1 HSPs)
scaffold0027 (12-245)||(54093-54325)
[»] scaffold0009 (1 HSPs)
scaffold0009 (6-119)||(64579-64692)


Alignment Details
Target: chr8 (Bit Score: 726; Significance: 0; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 726; E-Value: 0
Query Start/End: Original strand, 1 - 778
Target Start/End: Complemental strand, 10683509 - 10682732
Alignment:
Q  1 agaagagtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaatt 100  Q
    ||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  10683509 agaagagtatcgtgaaggtgatgaaaaggtgaagcagatcaagcttcagtctctaagaaggaaatttaaactgatgcagatggaagatgataaaaaaatt 10683410  T
Q  101 gttgattacatatccaaactgattaatattttcaatcagatgaacacatgcagttaaacaatttcagattaacatattgtttagaagatcatgtgaactc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10683409 gttgattacatatccaaactgattaatattttcaatcagatgaagacatgcagttaaacaatttcagattaacatattgtttagaagatcatgtgaactc 10683310  T
Q  201 tatccccaagatttgatttcatagttatggctatttaagaatcaaaggacatgaaaaccatgaagattgaaaagctgcaaagctctcagaaaagtgaaac 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10683309 tatccccaagatttgatttcatagttatggctatttaagaatcaaaggacatgaaaaccatgaatattgaaaagctgcaaagctctcagaaaagtgaaac 10683210  T
Q  301 atgtagatcttagaaccctggttgcagaaggcatgggaaaaattgcaattgaaggcaagattggaaaaataactataattgaagatgtgatatatgttac 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10683209 atgtagatcttagaaccctggttgcagaaggcatgggaaaaattgcaattgaaggcaagattggaaaaataactataattgaagatgtgatatatgttac 10683110  T
Q  401 tgggatgcaatgtaacttgctcagtgtaggtcaacttgtgcaaaaaggttactcagtaataatgatgtttaattctttgaaactggttgataaaaatcaa 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10683109 tgggatgcaatgtaacttgctcagtgtaggtcaacttgtgcaaaaaggttactcaataataatgatgtttaattctttgaaactggttgataaaaatcaa 10683010  T
Q  501 aggttagttttgaaaactcctcttgcaaaaaataaaacatttttagcaaatatgaaagttgttgaattgaaatgtttatcaacaactgtaagcaatgaag 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10683009 aggttagttttgaaaactcctcttgcaaaaaataaaacatttttagcaaatatgaaagttgttgagttgaaatgtttatcaacaactgtaagcaatgaag 10682910  T
Q  601 ttagttggttctggtactatagatttggccatttaaattttagacgtctcactcaatttgttgataaataattgatccaaggagcaccaaaattgaatgt 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10682909 ttagttggttctggtactatagatttggccatttaaattttagacgtctcactcaatttgttgataaataattgatccaaggagcaccaaaattgaatgt 10682810  T
Q  701 accagagaaagtttgtgatgtttgcttgatagacaagcaacctagaaatgcattaagttcaaacacagctcatagatc 778  Q
    ||||||||||||||| |||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||    
T  10682809 accagagaaagtttgggatgtttgcttgataggccagcaacttagaaatgcattaagttcaaacacagctcatagatc 10682732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 36 - 144
Target Start/End: Complemental strand, 44913074 - 44912966
Alignment:
Q  36 agatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttgattacatatccaaactgattaatattttcaa 135  Q
    |||| |||||||||||| ||||||| || |||||| ||||||| ||||||||||| ||||| |||||||||||||| |||||||||| |||| || | ||    
T  44913074 agataaagcttcagtctttaagaagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaa 44912975  T
Q  136 tcagatgaa 144  Q
    |||||||||    
T  44912974 tcagatgaa 44912966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 319 - 668
Target Start/End: Complemental strand, 200801 - 200452
Alignment:
Q  319 tggttgcagaaggcatgggaaaaattgcaattgaaggcaagattggaaaaataactataattgaagatgtgatatatgttactgggatgcaatgtaactt 418  Q
    ||||||||||||| ||||| || ||||| |||||||| |||| ||| ||| |  | ||||||||||| ||  | |||||| |||| ||||| || || ||    
T  200801 tggttgcagaaggaatggggaatattgctattgaaggaaagaatgggaaagtggcaataattgaagaagttctctatgttcctggaatgcagtgcaattt 200702  T
Q  419 gctcagtgtaggtcaacttgtgcaaaaaggttactcagtaataatgatgtttaattctttgaaactggttgataaaaatcaaaggttagttttgaaaact 518  Q
    ||| |||||||||||  |  | || ||||| |||||||| |  |||| |   ||  | || ||  || |||||||  |||||||||||||||||||||||    
T  200701 gctgagtgtaggtcagttcattcagaaaggatactcagttactatgaaggacaacacctttaagttgtttgataatcatcaaaggttagttttgaaaact 200602  T
Q  519 cctcttgcaaaaaataaaacatttttag-caaatatgaaagttgttgaattgaaatgtttatcaacaactgtaagcaatgaagttagttggttctggtac 617  Q
    ||||||||||| |||| ||| |||| || | |||||||||| ||| ||| |||| ||||||||  | |  ||||   |||||| ||||||||| ||| ||    
T  200601 cctcttgcaaagaatagaac-ttttcagaccaatatgaaagctgtagaactgaactgtttatctgctatggtaaaagatgaagatagttggttatggcac 200503  T
Q  618 tatagatttggccatttaaattttagacgtctcactcaatttgttgataaa 668  Q
    ||||||||||| ||| | ||||||||| |||| | |||||| |||||||||    
T  200502 tatagatttggtcatctcaattttagaggtcttaatcaattggttgataaa 200452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 319 - 668
Target Start/End: Complemental strand, 315638 - 315289
Alignment:
Q  319 tggttgcagaaggcatgggaaaaattgcaattgaaggcaagattggaaaaataactataattgaagatgtgatatatgttactgggatgcaatgtaactt 418  Q
    ||||||||||||| ||||| || ||||| |||||||| |||| ||| ||| |  | ||||||||||| ||  | |||||| |||| ||||| || || ||    
T  315638 tggttgcagaaggaatggggaatattgctattgaaggaaagaatgggaaagtggcaataattgaagaagttctctatgttcctggaatgcagtgcaattt 315539  T
Q  419 gctcagtgtaggtcaacttgtgcaaaaaggttactcagtaataatgatgtttaattctttgaaactggttgataaaaatcaaaggttagttttgaaaact 518  Q
    ||| |||||||||||  |  | || ||||| |||||||| |  |||| |   ||  | || ||  || |||||||  |||||||||||||||||||||||    
T  315538 gctgagtgtaggtcagttcattcagaaaggatactcagttactatgaaggacaacacctttaagttgtttgataatcatcaaaggttagttttgaaaact 315439  T
Q  519 cctcttgcaaaaaataaaacatttttag-caaatatgaaagttgttgaattgaaatgtttatcaacaactgtaagcaatgaagttagttggttctggtac 617  Q
    ||||||||||| |||| ||| |||| || | |||||||||| ||| ||| |||| ||||||||  | |  ||||   |||||| ||||||||| ||| ||    
T  315438 cctcttgcaaagaatagaac-ttttcagaccaatatgaaagctgtagaactgaactgtttatctgctatggtaaaagatgaagatagttggttatggcac 315340  T
Q  618 tatagatttggccatttaaattttagacgtctcactcaatttgttgataaa 668  Q
    ||||||||||| ||| | ||||||||| |||| | |||||| |||||||||    
T  315339 tatagatttggtcatctcaattttagaggtcttaatcaattggttgataaa 315289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 319 - 668
Target Start/End: Complemental strand, 30408920 - 30408571
Alignment:
Q  319 tggttgcagaaggcatgggaaaaattgcaattgaaggcaagattggaaaaataactataattgaagatgtgatatatgttactgggatgcaatgtaactt 418  Q
    ||||||||||||| ||||| || ||||| |||||||| |||| ||| ||| |  | ||||||||||| ||  | |||||| |||| ||||| || || ||    
T  30408920 tggttgcagaaggaatggggaatattgctattgaaggaaagaatgggaaagtggcaataattgaagaagttctctatgttcctggaatgcagtgcaattt 30408821  T
Q  419 gctcagtgtaggtcaacttgtgcaaaaaggttactcagtaataatgatgtttaattctttgaaactggttgataaaaatcaaaggttagttttgaaaact 518  Q
    ||| |||||||||||  |  | || ||||| |||||||| |  |||| |   ||  | || ||  || |||||||  |||||||||||||||||||||||    
T  30408820 gctgagtgtaggtcagttcattcagaaaggatactcagttactatgaaggacaacacctttaagttgtttgataatcatcaaaggttagttttgaaaact 30408721  T
Q  519 cctcttgcaaaaaataaaacatttttag-caaatatgaaagttgttgaattgaaatgtttatcaacaactgtaagcaatgaagttagttggttctggtac 617  Q
    ||||||||||| |||| ||| |||| || | |||||||||| ||| ||| |||| ||||||||  | |  ||||   |||||| ||||||||| ||| ||    
T  30408720 cctcttgcaaagaatagaac-ttttcagaccaatatgaaagctgtagaactgaactgtttatctgctatggtaaaagatgaagatagttggttatggcac 30408622  T
Q  618 tatagatttggccatttaaattttagacgtctcactcaatttgttgataaa 668  Q
    ||||||||||| ||| | ||||||||| |||| | |||||| |||||||||    
T  30408621 tatagatttggtcatctcaattttagaggtcttaatcaattggttgataaa 30408571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 319 - 668
Target Start/End: Complemental strand, 43810600 - 43810251
Alignment:
Q  319 tggttgcagaaggcatgggaaaaattgcaattgaaggcaagattggaaaaataactataattgaagatgtgatatatgttactgggatgcaatgtaactt 418  Q
    ||||||||||||| ||||| || ||||| |||||||| |||| ||| ||| |  | ||||||||||| ||  | |||||| |||| ||||| || || ||    
T  43810600 tggttgcagaaggaatggggaatattgctattgaaggaaagaatgggaaagtggcaataattgaagaagttctctatgttcctggaatgcagtgcaattt 43810501  T
Q  419 gctcagtgtaggtcaacttgtgcaaaaaggttactcagtaataatgatgtttaattctttgaaactggttgataaaaatcaaaggttagttttgaaaact 518  Q
    ||| |||||||||||  |  | || ||||| |||||||| |  |||| |   ||  | || ||  || |||||||  |||||||||||||||||||||||    
T  43810500 gctgagtgtaggtcagttcattcagaaaggatactcagttactatgaaggacaacacctttaagttgtttgataatcatcaaaggttagttttgaaaact 43810401  T
Q  519 cctcttgcaaaaaataaaacatttttag-caaatatgaaagttgttgaattgaaatgtttatcaacaactgtaagcaatgaagttagttggttctggtac 617  Q
    ||||||||||| |||| ||| |||| || | |||||||||| ||| ||| |||| ||||||||  | |  ||||   |||||| ||||||||| ||| ||    
T  43810400 cctcttgcaaagaatagaac-ttttcagaccaatatgaaagctgtagaactgaactgtttatctgctatggtaaaagatgaagatagttggttatggcac 43810302  T
Q  618 tatagatttggccatttaaattttagacgtctcactcaatttgttgataaa 668  Q
    ||||||||||| ||| | ||||||||| |||| | |||||| |||||||||    
T  43810301 tatagatttggtcatctcaattttagaggtcttaatcaattggttgataaa 43810251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 6 - 144
Target Start/End: Complemental strand, 43811398 - 43811260
Alignment:
Q  6 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 105  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| ||||| ||||||||||||||| ||||||| |||||||||||||| || |||  |||    
T  43811398 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgaattgatgcaaatggaagatgatcagaagatttctga 43811299  T
Q  106 ttacatatccaaactgattaatattttcaatcagatgaa 144  Q
     ||||| || ||||| |||||| || | |||||||||||    
T  43811298 atacatctctaaactcattaatcttgtgaatcagatgaa 43811260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 6 - 144
Target Start/End: Complemental strand, 201599 - 201461
Alignment:
Q  6 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 105  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||| || |||  |||    
T  201599 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga 201500  T
Q  106 ttacatatccaaactgattaatattttcaatcagatgaa 144  Q
     ||||| || ||||| || ||| || | |||||||||||    
T  201499 gtacatctctaaactcatcaatcttgtgaatcagatgaa 201461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 6 - 144
Target Start/End: Complemental strand, 316436 - 316298
Alignment:
Q  6 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 105  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||| || |||  |||    
T  316436 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga 316337  T
Q  106 ttacatatccaaactgattaatattttcaatcagatgaa 144  Q
     ||||| || ||||| || ||| || | |||||||||||    
T  316336 gtacatctctaaactcatcaatcttgtgaatcagatgaa 316298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 6 - 144
Target Start/End: Complemental strand, 30409718 - 30409580
Alignment:
Q  6 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 105  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||| || |||  |||    
T  30409718 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga 30409619  T
Q  106 ttacatatccaaactgattaatattttcaatcagatgaa 144  Q
     ||||| || ||||| || ||| || | |||||||||||    
T  30409618 gtacatctctaaactcatcaatcttgtgaatcagatgaa 30409580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 319 - 696
Target Start/End: Original strand, 1288364 - 1288743
Alignment:
Q  319 tggttgcagaaggcatgggaaaaattgcaattgaaggcaagattggaaaaataactataattgaagatgtgatatatgttactgggatgcaatgtaactt 418  Q
    ||||||||||||| |||||||| ||||  |||||||| |||| ||| |||||    |||||||| || || || |||||| |||| ||||| || |||||    
T  1288364 tggttgcagaaggaatgggaaatattgttattgaaggaaagaatgggaaaatggtaataattgaggaagttatctatgttcctggaatgcagtgcaactt 1288463  T
Q  419 gctcagtgtaggtcaacttgtgcaaaaaggttactcagtaataatgatgtttaattctttgaaactggttgataaaa-atcaaaggttagttttgaaaac 517  Q
    ||| |||||| ||||| |  | || ||||| |||||||| |  |||| |   ||  | || ||  || ||||||||| |||||||||| || ||||||||    
T  1288464 gctgagtgtatgtcaattcattcagaaaggatactcagttactatgaaggacaacacctttaagttgtttgataaaacatcaaaggttggtattgaaaac 1288563  T
Q  518 tcctcttgcaaaaaataaaacatttttagcaaatatgaaagttgttgaattgaaatgtttatcaacaactgtaagcaatgaagttagttggttctggtac 617  Q
    |||||||||||| |||| ||| |||    | |||||||||| ||| || ||||| ||||||||  | |  ||||   |||||| ||| ||||| ||  ||    
T  1288564 tcctcttgcaaagaatagaacttttcataccaatatgaaagctgtagagttgaactgtttatctgctatggtaaaagatgaagatagatggttatgacac 1288663  T
Q  618 tatagatttggccatttaaattttagacgtctcactcaatttgttgataaataattgatccaaggagcacc-aaaattga 696  Q
    ||||||||||| ||| | ||||||||| |||| | |||||| ||||||||| || |||| | ||||| ||| ||||||||    
T  1288664 tatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgattctaggagtacctaaaattga 1288743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 487 - 668
Target Start/End: Original strand, 41947023 - 41947204
Alignment:
Q  487 ttgataaaaatcaaaggttagttttgaaaactcctcttgcaaaaaataaaacatttttag-caaatatgaaagttgttgaattgaaatgtttatcaacaa 585  Q
    |||||||| |||||| |||||| |||||||||||||||||||| |||| ||| |||| || | |||||||||| ||| || ||||| ||||||||  | |    
T  41947023 ttgataaacatcaaatgttagtattgaaaactcctcttgcaaagaatagaac-ttttcagaccaatatgaaagctgtagatttgaactgtttatctgcta 41947121  T
Q  586 ctgtaagcaatgaagttagttggttctggtactatagatttggccatttaaattttagacgtctcactcaatttgttgataaa 668  Q
      ||||   |||||| ||| ||||| ||| | ||||||||||| ||| | ||||||||| |||| | |||||| |||||||||    
T  41947122 tggtaaaagatgaagatagctggttatggcattatagatttggtcatctcaattttagaggtcttaatcaattagttgataaa 41947204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 28647153 - 28647240
Alignment:
Q  6 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatca 93  Q
    ||||||||||| ||||||| || || ||   ||| |||||||| |  |||||||||||||||||||||||||| ||||||||||||||    
T  28647153 agtatcatgaaggtgatgataaagtgaaattgattaagcttcaataactaagaaggaaatttgaactgatgcaaatggaagatgatca 28647240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 1287569 - 1287707
Alignment:
Q  6 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 105  Q
    ||||||||||| ||||||| ||||| ||   ||| |||||||| || || |||| ||||||||| |||||| |||||||||||||||| || |||  |||    
T  1287569 agtatcatgaaggtgatgataaggtgaaatcgattaagcttcaatcactgagaaagaaatttgagctgatgtagatggaagatgatcagaagatttctga 1287668  T
Q  106 ttacatatccaaactgattaatattttcaatcagatgaa 144  Q
     ||||| || ||||| || ||| || | |||||||||||    
T  1287669 atacatctctaaactcatcaatcttgtgaatcagatgaa 1287707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 41946058 - 41946145
Alignment:
Q  6 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatca 93  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| || ||| | ||||||||||| |||||| ||||||||||||||||    
T  41946058 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatcactacggaggaaatttgagctgatgtagatggaagatgatca 41946145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 311 - 534
Target Start/End: Original strand, 30048864 - 30049087
Alignment:
Q  311 tagaaccctggttgcagaaggcatgggaaaaattgcaattgaaggcaagattggaaaaataactataattgaagatgtgatatatgttactgggatgcaa 410  Q
    |||||| || |||| | ||||||||||||| ||||  |||||| | |||| ||||||| |||   ||||| |||||||||| ||| |||  |||||| ||    
T  30048864 tagaacactagttggaaaaggcatgggaaagattgttattgaaagaaagaatggaaaattaatagtaatttaagatgtgatttatattatggggatgtaa 30048963  T
Q  411 tgtaacttgctcagtgtaggtcaacttgtgcaaaaaggttactcagtaataatgatgtttaattctttgaaactggttgataaaaatcaaaggttagttt 510  Q
    || |||||| | |||||||||||| | |||||||| || || ||||||| ||||| |  ||| ||||||||| || |||||||||||||||||||||||     
T  30048964 tgcaacttgttgagtgtaggtcaattggtgcaaaagggctattcagtaacaatgaaggataactctttgaaattgtttgataaaaatcaaaggttagttc 30049063  T
Q  511 tgaaaactcctcttgcaaaaaata 534  Q
    |||||||||| |||||||| ||||    
T  30049064 tgaaaactccccttgcaaagaata 30049087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 20 - 225
Target Start/End: Complemental strand, 16598275 - 16598070
Alignment:
Q  20 gatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttgattacatatccaaac 119  Q
    ||||||||||| ||| |||| |||||||| ||| || ||||||||||||||  | |||| ||||||||||| || || |||||||||||||| || ||      
T  16598275 gatgaaaaggtgaagtagataaagcttcactctttatgaaggaaatttgaatagttgcaaatggaagatgagcagaagattgttgattacatctctaaga 16598176  T
Q  120 tgattaatattttcaatcagatgaacacatgcagttaaacaatttcagattaacatattgtttagaagatcatgtgaactctatccccaagatttgattt 219  Q
    |||||||| ||   |||| ||||||  |||| ||| |||| |||||||||  ||| |||||| ||||||||||| |||||||||| | ||| ||||||||    
T  16598175 tgattaatgttgaaaatcggatgaaggcatggagtgaaactatttcagatccacaaattgttgagaagatcatgagaactctatctctaaggtttgattt 16598076  T
Q  220 catagt 225  Q
    ||||||    
T  16598075 catagt 16598070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 321 - 668
Target Start/End: Complemental strand, 40370362 - 40370015
Alignment:
Q  321 gttgcagaaggcatgggaaaaattgcaattgaaggcaagattggaaaaataactataattgaagatgtgatatatgttactgggatgcaatgtaacttgc 420  Q
    ||||||||||| ||||| || ||||| |||||||| |||| ||| ||| |  | ||||||||||| ||  | |||||| |||| ||||| || |||||||    
T  40370362 gttgcagaaggaatggggaacattgctattgaaggaaagaatgggaaagtggcaataattgaagaagttctctatgttcctggaatgcagtgcaacttgc 40370263  T
Q  421 tcagtgtaggtcaacttgtgcaaaaaggttactcagtaataatgatgtttaattctttgaaactggttgataaaaatcaaaggttagttttgaaaactcc 520  Q
    | |||||||||||| |  | || ||||| |||||||| |  |||| |   ||  | || ||  || |||||||  |||||||||||||||||||||||||    
T  40370262 tgagtgtaggtcaattcattcataaaggatactcagttactatgaaggacaacacctttaagttgtttgataatcatcaaaggttagttttgaaaactcc 40370163  T
Q  521 tcttgcaaaaaataaaacatttttag-caaatatgaaagttgttgaattgaaatgtttatcaacaactgtaagcaatgaagttagttggttctggtacta 619  Q
    ||||||||| |||| ||| |||| || | |||||||||||||| |||||||| ||||||||  | |  ||||   |||||| ||| ||||| ||| ||||    
T  40370162 tcttgcaaagaatagaac-ttttcagaccaatatgaaagttgtagaattgaactgtttatctgctatggtaaaagatgaagatagctggttatggcacta 40370064  T
Q  620 tagatttggccatttaaattttagacgtctcactcaatttgttgataaa 668  Q
    ||||||||| ||| | ||||||||| |||| |  ||||| |||||||||    
T  40370063 tagatttggtcatctcaattttagaggtcttaaccaattggttgataaa 40370015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 594 - 777
Target Start/End: Original strand, 30049134 - 30049318
Alignment:
Q  594 aatgaagttagttggttctggtactatagatttggccatttaaattttagacgtctcactcaatttgttgataaataattgatccaaggagcaccaaaat 693  Q
    ||||||| ||||| ||| ||| |||| |||||||| ||||||||||||||| |||| | ||| || |||||  || |||||||   ||||| |||||| |    
T  30049134 aatgaagatagttagttatgggactacagatttggtcatttaaattttagaagtcttaatcagttagttgacgaagaattgattttaggagtaccaaagt 30049233  T
Q  694 tgaatgtaccagagaaagtttgtgat-gtttgcttgatagacaagcaacctagaaatgcattaagttcaaacacagctcatagat 777  Q
    ||||| ||||||||||| | ||||||  |||  |||||| |||||||||||||||||||||| ||| |||| ||| |||||||||    
T  30049234 tgaatataccagagaaaatatgtgatattttttttgataaacaagcaacctagaaatgcattcagtgcaaatacaactcatagat 30049318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 487 - 668
Target Start/End: Original strand, 16795877 - 16796058
Alignment:
Q  487 ttgataaaaatcaaaggttagttttgaaaactcctcttgcaaaaaataaaacatttttag-caaatatgaaagttgttgaattgaaatgtttatcaacaa 585  Q
    |||||||  |||||||||||||||||||||||||||||||||| |||| ||| |||| || | |||||||||| ||| ||| |||| ||||||||  | |    
T  16795877 ttgataatcatcaaaggttagttttgaaaactcctcttgcaaagaatagaac-ttttcagaccaatatgaaagctgtagaactgaactgtttatctgcta 16795975  T
Q  586 ctgtaagcaatgaagttagttggttctggtactatagatttggccatttaaattttagacgtctcactcaatttgttgataaa 668  Q
      ||||   |||||| ||||||||| ||| ||||||||||||| ||| | ||||||||| |||| | |||||| |||||||||    
T  16795976 tggtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaa 16796058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 487 - 668
Target Start/End: Original strand, 12020497 - 12020678
Alignment:
Q  487 ttgataaaaatcaaaggttagttttgaaaactcctcttgcaaaaaataaaacatttttagcaaatatgaaagttgttgaattgaaatgtttatcaacaac 586  Q
    |||||||  |||||||||||||||||||||||||||||||||| |||| ||| |||    | |||||||||| ||| |||||||| ||||||||  | |     
T  12020497 ttgataatcatcaaaggttagttttgaaaactcctcttgcaaagaatagaacctttcagaccaatatgaaagctgtagaattgaactgtttatctgctat 12020596  T
Q  587 tgtaagcaatgaagttagttggttctggtactatagatttggccatttaaattttagacgtctcactcaatttgttgataaa 668  Q
     ||||   |||||| ||| ||||| ||| ||||||||||||| ||| | ||||||||| |||| | |||||| |||||||||    
T  12020597 ggtaaaagatgaagatagctggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaa 12020678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 487 - 668
Target Start/End: Original strand, 30697004 - 30697185
Alignment:
Q  487 ttgataaaaatcaaaggttagttttgaaaactcctcttgcaaaaaataaaacatttttagcaaatatgaaagttgttgaattgaaatgtttatcaacaac 586  Q
    |||||||  |||||||||||||||||||||||||||||||||| |||| ||| |||    | |||||||||| ||| |||||||| ||||||||  | |     
T  30697004 ttgataatcatcaaaggttagttttgaaaactcctcttgcaaagaatataacctttcagaccaatatgaaagctgtagaattgaactgtttatctgctat 30697103  T
Q  587 tgtaagcaatgaagttagttggttctggtactatagatttggccatttaaattttagacgtctcactcaatttgttgataaa 668  Q
     ||||   |||||| ||| ||||| ||| ||||||||||||| ||| | ||||||||| |||| | |||||| |||||||||    
T  30697104 ggtaaaagatgaagatagctggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaa 30697185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 319 - 668
Target Start/End: Complemental strand, 7102491 - 7102142
Alignment:
Q  319 tggttgcagaaggcatgggaaaaattgcaattgaaggcaagattggaaaaataactataattgaagatgtgatatatgttactgggatgcaatgtaactt 418  Q
    ||||||||||||| ||||| || ||||| |||||||| |||| ||| ||| |  | ||||||||||| ||  | |||||| |||| ||||| || || ||    
T  7102491 tggttgcagaaggaatggggaatattgctattgaaggaaagaatgggaaagtggcaataattgaagaagttctctatgttcctggaatgcagtgcaattt 7102392  T
Q  419 gctcagtgtaggtcaacttgtgcaaaaaggttactcagtaataatgatgtttaattctttgaaactggttgataaaaatcaaaggttagttttgaaaact 518  Q
    ||| |||||||||||  |  | || ||||| |||||||| |  |||| |   ||  | || ||  || |||||||  |||||||||||||||||||||||    
T  7102391 gctgagtgtaggtcagttcattcagaaaggatactcagttactatgaaggacaacacctttaagttgtttgataatcatcaaaggttagttttgaaaact 7102292  T
Q  519 cctcttgcaaaaaataaaacatttttag-caaatatgaaagttgttgaattgaaatgtttatcaacaactgtaagcaatgaagttagttggttctggtac 617  Q
    ||||||||||| |||| ||| |||| || | |||||||||| ||| ||| |||| ||||||||  | |  ||||   |||||| ||||||||| ||| |     
T  7102291 cctcttgcaaagaatagaac-ttttcagaccaatatgaaagctgtagaactgaactgtttatctgctatggtaaaagatgaagatagttggttatggcaa 7102193  T
Q  618 tatagatttggccatttaaattttagacgtctcactcaatttgttgataaa 668  Q
    ||||||||||| ||| | ||||||||| |||| | |||||| |||||||||    
T  7102192 tatagatttggtcatctcaattttagaggtcttaatcaattggttgataaa 7102142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 12019531 - 12019669
Alignment:
Q  6 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 105  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| ||||| ||||||||||||||| ||||||| |||||||||||||| || |||  |||    
T  12019531 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgaattgatgcaaatggaagatgatcagaagatttctga 12019630  T
Q  106 ttacatatccaaactgattaatattttcaatcagatgaa 144  Q
     ||||| || ||||| |||||| || | |||||||||||    
T  12019631 atacatctctaaactcattaatcttgtgaatcagatgaa 12019669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 37659469 - 37659607
Alignment:
Q  6 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 105  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| ||||| ||||||||||||||| ||||||| |||||||||||||| || |||  |||    
T  37659469 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgaattgatgcaaatggaagatgatcagaagatttctga 37659568  T
Q  106 ttacatatccaaactgattaatattttcaatcagatgaa 144  Q
     ||||| || ||||| |||||| || | |||||||||||    
T  37659569 atacatctctaaactcattaatcttgtgaatcagatgaa 37659607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 487 - 668
Target Start/End: Original strand, 37679244 - 37679425
Alignment:
Q  487 ttgataaaaatcaaaggttagttttgaaaactcctcttgcaaaaaataaaacatttttag-caaatatgaaagttgttgaattgaaatgtttatcaacaa 585  Q
    |||||||  |||||||||||||||||||||||||||||||||| |||| ||| |||| || | |||||||||| ||| |||||||| ||||||||    |    
T  37679244 ttgataatcatcaaaggttagttttgaaaactcctcttgcaaagaatagaac-ttttcagaccaatatgaaagctgtagaattgaactgtttatctgata 37679342  T
Q  586 ctgtaagcaatgaagttagttggttctggtactatagatttggccatttaaattttagacgtctcactcaatttgttgataaa 668  Q
      ||||   |||||| ||| ||||| ||| ||||||||||||| ||| | ||||||||| |||| | |||||| |||||||||    
T  37679343 tggtaaaagatgaagatagctggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaa 37679425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 10275279 - 10275366
Alignment:
Q  6 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatca 93  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||    
T  10275279 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatcactaagaaggaaatttgagctgatgcagatggaagatgatca 10275366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 6 - 144
Target Start/End: Complemental strand, 7103289 - 7103151
Alignment:
Q  6 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 105  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||| || |||  |||    
T  7103289 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga 7103190  T
Q  106 ttacatatccaaactgattaatattttcaatcagatgaa 144  Q
     ||||| || ||||| || ||| || | |||||||||||    
T  7103189 gtacatctctaaactcatcaatcttgtgaatcagatgaa 7103151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 16794911 - 16795049
Alignment:
Q  6 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 105  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||| || |||  |||    
T  16794911 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga 16795010  T
Q  106 ttacatatccaaactgattaatattttcaatcagatgaa 144  Q
     ||||| || ||||| || ||| || | |||||||||||    
T  16795011 gtacatctctaaactcatcaatcttgtgaatcagatgaa 16795049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 225
Target Start/End: Original strand, 30048062 - 30048276
Alignment:
Q  8 tatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttgatt 107  Q
    ||||||||| | ||||| ||||| ||| |||| ||||||| |||| |||||||||||||| |  ||||||| |||||||| || ||||| ||| ||||||    
T  30048062 tatcatgaaggagatgagaaggtgaaggagataaagcttcggtctttaagaaggaaatttaagttgatgcaaatggaagaggagcaaaagattcttgatt 30048161  T
Q  108 acatatccaaactgattaatattttcaatcagatgaacacatgcagttaaacaatttcagattaacatattgtttagaagatcatgtgaactctatcccc 207  Q
    |||| |  ||  |||||||| || |    || |||||  |||||||| ||||||| || |||||||| ||| || ||| ||||||  |||| ||||| ||    
T  30048162 acatctttaagttgattaatgttgt---acaaatgaaggcatgcagtgaaacaatctctgattaacaaattattgagacgatcataagaacactatctcc 30048258  T
Q  208 aagatttgatttcatagt 225  Q
    ||||||| |||| |||||    
T  30048259 aagattttattttatagt 30048276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 144
Target Start/End: Complemental strand, 40371127 - 40371024
Alignment:
Q  41 aagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttgattacatatccaaactgattaatattttcaatcaga 140  Q
    ||||||||||| || ||||||||||||||||||||||| |||||||||||||| || |||  ||| ||||| || ||||| || ||| || | |||||||    
T  40371127 aagcttcagtcactgagaaggaaatttgaactgatgcaaatggaagatgatcagaagatttctgaatacatctctaaactcatcaatcttgtgaatcaga 40371028  T
Q  141 tgaa 144  Q
    ||||    
T  40371027 tgaa 40371024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 487 - 580
Target Start/End: Original strand, 10276232 - 10276325
Alignment:
Q  487 ttgataaaaatcaaaggttagttttgaaaactcctcttgcaaaaaataaaacatttttag-caaatatgaaagttgttgaattgaaatgtttatc 580  Q
    |||||||  |||||||||||||||||||||||||||||||||| |||| ||| |||| || | |||||||||| ||| |||||||| ||||||||    
T  10276232 ttgataattatcaaaggttagttttgaaaactcctcttgcaaagaatataac-ttttcagaccaatatgaaagctgtagaattgaactgtttatc 10276325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 30696038 - 30696176
Alignment:
Q  6 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 105  Q
    |||| |||||| ||||||| || || |||  ||| |||||||| || || |||||||||||||| |||||||| |||||||||||||| || |||  |||    
T  30696038 agtaccatgaaggtgatgataaagtgaagttgattaagcttcaatcactgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga 30696137  T
Q  106 ttacatatccaaactgattaatattttcaatcagatgaa 144  Q
     ||||| || ||||| || ||| || | |||||||||||    
T  30696138 gtacatctctaaactcatcaatcttgtgaatcagatgaa 30696176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 319 - 433
Target Start/End: Original strand, 16795709 - 16795823
Alignment:
Q  319 tggttgcagaaggcatgggaaaaattgcaattgaaggcaagattggaaaaataactataattgaagatgtgatatatgttactgggatgcaatgtaactt 418  Q
    ||||||||||||| ||||| || ||||| |||||||| |||| ||| ||| |  | ||||||||||| ||  | |||||| |||| ||||| || || ||    
T  16795709 tggttgcagaaggaatggggaatattgctattgaaggaaagaatgggaaagtggcaataattgaagaagttctctatgttcctggaatgcagtgcaattt 16795808  T
Q  419 gctcagtgtaggtca 433  Q
    ||| |||||||||||    
T  16795809 gctgagtgtaggtca 16795823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 487 - 668
Target Start/End: Original strand, 36672259 - 36672440
Alignment:
Q  487 ttgataaaaatcaaaggttagttttgaaaactcctcttgcaaaaaataaaacatttttag-caaatatgaaagttgttgaattgaaatgtttatcaacaa 585  Q
    |||||||  |||||||||||||||||||||||||||||||||| |||| ||| |||| || | |||||||||| ||| ||| |||| ||||||||  |||    
T  36672259 ttgataatcatcaaaggttagttttgaaaactcctcttgcaaagaatagaac-ttttcagaccaatatgaaagctgtagaactgaactgtttatctgcaa 36672357  T
Q  586 ctgtaagcaatgaagttagttggttctggtactatagatttggccatttaaattttagacgtctcactcaatttgttgataaa 668  Q
      ||||   |||||| ||||||||| ||| ||||||||||||| ||| | ||||||||| |||| | |||||| |||||||||    
T  36672358 tggtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaa 36672440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 487 - 668
Target Start/End: Original strand, 8052600 - 8052781
Alignment:
Q  487 ttgataaaaatcaaaggttagttttgaaaactcctcttgcaaaaaataaaacatttttag-caaatatgaaagttgttgaattgaaatgtttatcaacaa 585  Q
    |||||||  |||||||||||||||||||||||||||||||||| |||| ||| |||| || | |||||||||| ||| ||| |||| ||||||||  | |    
T  8052600 ttgataatcatcaaaggttagttttgaaaactcctcttgcaaagaatagaac-ttttcagaccaatatgaaagctgtagaactgaactgtttatctgcta 8052698  T
Q  586 ctgtaagcaatgaagttagttggttctggtactatagatttggccatttaaattttagacgtctcactcaatttgttgataaa 668  Q
      ||||   |||||| ||||||||| ||| ||||||||||||| ||| | ||||||||| |||| | |||||| |||||||||    
T  8052699 tggtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaa 8052781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 8051634 - 8051772
Alignment:
Q  6 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 105  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||| || |||  |||    
T  8051634 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga 8051733  T
Q  106 ttacatatccaaactgattaatattttcaatcagatgaa 144  Q
     ||||| || ||||| || ||| || | |||||||||||    
T  8051734 gtacatctctaaactcatcaatcttgtgaatcagatgaa 8051772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 36671293 - 36671431
Alignment:
Q  6 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 105  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||| || |||  |||    
T  36671293 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga 36671392  T
Q  106 ttacatatccaaactgattaatattttcaatcagatgaa 144  Q
     ||||| || ||||| || ||| || | |||||||||||    
T  36671393 gtacatctctaaactcatcaatcttgtgaatcagatgaa 36671431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 487 - 580
Target Start/End: Complemental strand, 13269480 - 13269387
Alignment:
Q  487 ttgataaaaatcaaaggttagttttgaaaactcctcttgcaaaaaataaaacatttttag-caaatatgaaagttgttgaattgaaatgtttatc 580  Q
    |||||||| ||||||||||||| |||||||||||||||||||| |||| || ||||| || | |||||||||||||| || ||||| ||||||||    
T  13269480 ttgataaacatcaaaggttagtattgaaaactcctcttgcaaagaatagaa-attttcagaccaatatgaaagttgtagagttgaactgtttatc 13269387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 487 - 668
Target Start/End: Complemental strand, 35953381 - 35953200
Alignment:
Q  487 ttgataaaaatcaaaggttagttttgaaaactcctcttgcaaaaaataaaacatttttag-caaatatgaaagttgttgaattgaaatgtttatcaacaa 585  Q
    |||||||| ||||||||||||| |||||||||||||||||||| |||| ||| |||| || | |||||||||| ||| || ||||| ||||||||    |    
T  35953381 ttgataaacatcaaaggttagtattgaaaactcctcttgcaaagaatagaac-ttttcagaccaatatgaaagctgtagatttgaactgtttatctgtta 35953283  T
Q  586 ctgtaagcaatgaagttagttggttctggtactatagatttggccatttaaattttagacgtctcactcaatttgttgataaa 668  Q
      ||||   |||||| || || ||| ||| ||||||||||||| ||| | ||||||||| |||| | |||||| |||||||||    
T  35953282 tggtaaaagatgaagatattttgttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaa 35953200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 13270443 - 13270358
Alignment:
Q  6 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgat 91  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| || || |||||||||||||| |||||||| ||||||||||||    
T  13270443 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatcactgagaaggaaatttgagctgatgcaaatggaagatgat 13270358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 35953989 - 35953920
Alignment:
Q  24 aaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatca 93  Q
    |||| ||||||  ||| |||||||| || || |||||||||||||| |||||||| ||||||||||||||    
T  35953989 aaaaagtaaagttgattaagcttcaatcactgagaaggaaatttgagctgatgcaaatggaagatgatca 35953920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 319 - 433
Target Start/End: Original strand, 8052432 - 8052546
Alignment:
Q  319 tggttgcagaaggcatgggaaaaattgcaattgaaggcaagattggaaaaataactataattgaagatgtgatatatgttactgggatgcaatgtaactt 418  Q
    ||||||||||||| ||||| || ||||| |||||||| |||| ||| ||| |  | ||||||||||| ||  | |||||| |||| ||||| || || ||    
T  8052432 tggttgcagaaggaatggggaatattgctattgaaggaaagaatgggaaagtggcaataattgaagaagttctctatgttcctggaatgcagtgcaattt 8052531  T
Q  419 gctcagtgtaggtca 433  Q
    ||| |||||||||||    
T  8052532 gctgagtgtaggtca 8052546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 319 - 433
Target Start/End: Original strand, 36672091 - 36672205
Alignment:
Q  319 tggttgcagaaggcatgggaaaaattgcaattgaaggcaagattggaaaaataactataattgaagatgtgatatatgttactgggatgcaatgtaactt 418  Q
    ||||||||||||| ||||| || ||||| |||||||| |||| ||| ||| |  | ||||||||||| ||  | |||||| |||| ||||| || || ||    
T  36672091 tggttgcagaaggaatggggaatattgctattgaaggaaagaatgggaaagtggcaataattgaagaagttctctatgttcctggaatgcagtgcaattt 36672190  T
Q  419 gctcagtgtaggtca 433  Q
    ||| |||||||||||    
T  36672191 gctgagtgtaggtca 36672205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 319 - 668
Target Start/End: Complemental strand, 47982 - 47633
Alignment:
Q  319 tggttgcagaaggcatgggaaaaattgcaattgaaggcaagattggaaaaataactataattgaagatgtgatatatgttactgggatgcaatgtaactt 418  Q
    ||||||||||||| ||||| || ||||| |||||||| |||| ||| ||| |  | ||||||||||| ||  | |||||| |||| ||||| || || ||    
T  47982 tggttgcagaaggaatggggaatattgctattgaaggaaagaatgggaaagtggcaataattgaagaagttctctatgttcctggaatgcagtgcaattt 47883  T
Q  419 gctcagtgtaggtcaacttgtgcaaaaaggttactcagtaataatgatgtttaattctttgaaactggttgataaaaatcaaaggttagttttgaaaact 518  Q
    ||| |||||||||||  |  | || ||||| |||||||| |  |||| |   ||  | || ||  || |||||||  |||||||||||||||||||||||    
T  47882 gctgagtgtaggtcagttcattcagaaaggatactcagttactatgaaggacaacacctttaagttgtttgataatcatcaaaggttagttttgaaaact 47783  T
Q  519 cctcttgcaaaaaataaaacatttttag-caaatatgaaagttgttgaattgaaatgtttatcaacaactgtaagcaatgaagttagttggttctggtac 617  Q
    ||||||||||| |||| ||| |||| || | |||||||||| ||| |||||||| ||||||||  | |  ||||   |||||| ||| ||||| ||| ||    
T  47782 cctcttgcaaagaatagaac-ttttcagaccaatatgaaagctgtagaattgaactgtttatctgctatggtaaaagatgaagatagctggttatggcac 47684  T
Q  618 tatagatttggccatttaaattttagacgtctcactcaatttgttgataaa 668  Q
    ||||||||||| ||| | ||||||||| |||| | |||||| |||||||||    
T  47683 tatagatttggtcatctcaattttagaggtcttaatcaattggttgataaa 47633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 6 - 144
Target Start/End: Complemental strand, 48780 - 48642
Alignment:
Q  6 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 105  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||| || |||  |||    
T  48780 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga 48681  T
Q  106 ttacatatccaaactgattaatattttcaatcagatgaa 144  Q
     ||||| || ||||| || ||| || | |||||||||||    
T  48680 gtacatctctaaactcatcaatcttgtgaatcagatgaa 48642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 487 - 668
Target Start/End: Complemental strand, 7943032 - 7942851
Alignment:
Q  487 ttgataaaaatcaaaggttagttttgaaaactcctcttgcaaaaaataaaacatttttag-caaatatgaaagttgttgaattgaaatgtttatcaacaa 585  Q
    |||||||  |||||||||||||||||||||||||||||||||| |||| ||| |||| || | |||||||||| ||| ||| |||| ||||||||  | |    
T  7943032 ttgataatcatcaaaggttagttttgaaaactcctcttgcaaagaatagaac-ttttcagaccaatatgaaagctgtagaactgaactgtttatctgcta 7942934  T
Q  586 ctgtaagcaatgaagttagttggttctggtactatagatttggccatttaaattttagacgtctcactcaatttgttgataaa 668  Q
      ||||   |||||| ||||||||| ||| ||||||||||||| ||| | ||||||||| |||| | |||||| |||||||||    
T  7942933 tggtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaa 7942851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 487 - 668
Target Start/End: Original strand, 27758605 - 27758786
Alignment:
Q  487 ttgataaaaatcaaaggttagttttgaaaactcctcttgcaaaaaataaaacatttttagcaaatatgaaagttgttgaattgaaatgtttatcaacaac 586  Q
    |||||||  |||||||||||||||||||||||||||||||||| |||| ||| |||    | |||||||||| ||| ||| |||| ||||||||  | |     
T  27758605 ttgataatcatcaaaggttagttttgaaaactcctcttgcaaagaatagaacctttcagaccaatatgaaagctgtagaactgaactgtttatctgctat 27758704  T
Q  587 tgtaagcaatgaagttagttggttctggtactatagatttggccatttaaattttagacgtctcactcaatttgttgataaa 668  Q
     ||||   |||||| ||||||||| ||| ||||||||||||| ||| | ||||||||| |||| | |||||| |||||||||    
T  27758705 ggtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaa 27758786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 6 - 144
Target Start/End: Complemental strand, 7943998 - 7943860
Alignment:
Q  6 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 105  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||| || |||  |||    
T  7943998 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga 7943899  T
Q  106 ttacatatccaaactgattaatattttcaatcagatgaa 144  Q
     ||||| || ||||| || ||| || | |||||||||||    
T  7943898 gtacatctctaaactcatcaatcttgtgaatcagatgaa 7943860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 730353 - 730593
Alignment:
Q  9 atcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttgatta 108  Q
    |||||||| | ||||| ||||| |||  ||| |||||||||||| | |||||||| |||||| ||||||||||||| || || ||||| |||| ||| ||    
T  730353 atcatgaaggcgatgataaggtgaagttgattaagcttcagtctttgagaaggaagtttgaattgatgcagatggaggaagagcaaaatattgctgaata 730452  T
Q  109 catatccaaactgattaatattttcaatcagatgaacacatgcagttaaacaatttcagattaacatattgtttagaagatcatgtgaactctatcccca 208  Q
     || |||||||| || |||||| | |||||||||||  | ||  |  || ||||  | ||| |||| |||||| |||| || ||| |||| |||||  ||    
T  730453 tatctccaaactcatcaatattgtgaatcagatgaaggcttgtggagaagcaatgactgatcaacaaattgttgagaaaatgatgagaacactatcatca 730552  T
Q  209 agatttgatttcatagttatggctatttaagaatcaaagga 249  Q
    ||||||||||| |||||  | || ||| |||||||||||||    
T  730553 agatttgattttatagtggttgcaattcaagaatcaaagga 730593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 27757639 - 27757777
Alignment:
Q  6 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 105  Q
    ||||||||||| ||||||| || || |||  ||| || ||||| ||||| |||||||||||||| |||||||| |||||||||||||| || |||  |||    
T  27757639 agtatcatgaaggtgatgataaagtgaagttgattaaacttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga 27757738  T
Q  106 ttacatatccaaactgattaatattttcaatcagatgaa 144  Q
     ||||| || ||||| || ||| || | |||||||||||    
T  27757739 gtacatctctaaactcatcaatcttgtgaatcagatgaa 27757777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 3e-22; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 319 - 668
Target Start/End: Complemental strand, 8318621 - 8318272
Alignment:
Q  319 tggttgcagaaggcatgggaaaaattgcaattgaaggcaagattggaaaaataactataattgaagatgtgatatatgttactgggatgcaatgtaactt 418  Q
    ||||||||||||| ||||| || ||||| |||||||| |||| ||| ||| |  | ||||||||||| ||  | |||||| |||| ||||| || || ||    
T  8318621 tggttgcagaaggaatggggaatattgctattgaaggaaagaatgggaaagtggcaataattgaagaagttctctatgttcctggaatgcagtgcaattt 8318522  T
Q  419 gctcagtgtaggtcaacttgtgcaaaaaggttactcagtaataatgatgtttaattctttgaaactggttgataaaaatcaaaggttagttttgaaaact 518  Q
    ||| |||||||||||  |  | || ||||| |||||||| |  |||| |   ||  | || ||  || |||||||  |||||||||||||||||||||||    
T  8318521 gctgagtgtaggtcagttcattcagaaaggatactcagttactatgaaggacaacacctttaagttgtttgataatcatcaaaggttagttttgaaaact 8318422  T
Q  519 cctcttgcaaaaaataaaacatttttag-caaatatgaaagttgttgaattgaaatgtttatcaacaactgtaagcaatgaagttagttggttctggtac 617  Q
    ||||||||||| |||| ||| |||| || | |||||||||| ||| ||| |||| ||||||||  | |  ||||   |||||| ||||||||| ||| ||    
T  8318421 cctcttgcaaagaatagaac-ttttcagaccaatatgaaagctgtagaactgaactgtttatctgctatggtaaaagatgaagatagttggttatggcac 8318323  T
Q  618 tatagatttggccatttaaattttagacgtctcactcaatttgttgataaa 668  Q
    ||||||||||| ||| | ||||||||| |||| | |||||| |||||||||    
T  8318322 tatagatttggtcatctcaattttagaggtcttaatcaattggttgataaa 8318272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 321 - 676
Target Start/End: Complemental strand, 17889745 - 17889388
Alignment:
Q  321 gttgcagaaggcatgggaaaaattgcaattgaaggcaagattggaaaaataactataattgaagatgtgatatatgttactgggatgcaatgtaacttgc 420  Q
    ||||||||||| ||||| || ||||| |||||||| |||| ||| ||| |  | |||||| |||| ||  | |||||| |||| ||||| || |||||||    
T  17889745 gttgcagaaggaatggggaatattgctattgaaggaaagaatgggaaagtggcaataatttaagaagttctctatgttcctggaatgcagtgcaacttgc 17889646  T
Q  421 tcagtgtaggtcaacttgtgcaaaaaggttactcagtaataatgatgtttaattctttgaaactggttgataaaaatcaaaggttagttttgaaaactcc 520  Q
    | |||||||||||| |  | || ||||| |||||||| |  |||| |   ||  | || ||  || |||||||  |||||||||||||||||||||||||    
T  17889645 tgagtgtaggtcaattcattcagaaaggatactcagttactatgaaggaaaacacctttaagttgtttgataatcatcaaaggttagttttgaaaactcc 17889546  T
Q  521 tcttgcaaaaaataaaacatttttag-caaatatgaaagttgttgaattgaaatgtttatcaacaactgtaagcaatgaagttagttggttctggtacta 619  Q
    ||||||||| |||| ||| |||| || | |||||||||| ||| |||||||| ||||||||  | |  ||||   |||||| ||| ||||| ||| ||||    
T  17889545 tcttgcaaagaatagaac-ttttcagaccaatatgaaagctgtagaattgaactgtttatctgctatggtaaaagatgaagatagctggttatggcacta 17889447  T
Q  620 taga--tttggccatttaaattttagacgtctcactcaatttgttgataaataattgat 676  Q
    ||||  ||||| ||| | ||||||||| |||| | |||||| |||||||||||| ||||    
T  17889446 tagatttttggtcatctcaattttagaggtcttaatcaattggttgataaataaatgat 17889388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 6 - 144
Target Start/End: Complemental strand, 8319419 - 8319281
Alignment:
Q  6 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 105  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||| || |||  |||    
T  8319419 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga 8319320  T
Q  106 ttacatatccaaactgattaatattttcaatcagatgaa 144  Q
     ||||| || ||||| || ||| || | |||||||||||    
T  8319319 gtacatctctaaactcatcaatcttgtgaatcagatgaa 8319281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 487 - 543
Target Start/End: Original strand, 17161303 - 17161359
Alignment:
Q  487 ttgataaaaatcaaaggttagttttgaaaactcctcttgcaaaaaataaaacatttt 543  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||| ||| ||||    
T  17161303 ttgataaacatcaaaggttagtattgaaaactcctcttgcaaaaaatagaacttttt 17161359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 98
Target Start/End: Original strand, 17160335 - 17160427
Alignment:
Q  6 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaa 98  Q
    |||| |||||| ||||||| || || |||  ||| |||||||| || || || ||||||||||| ||||||||||||||||||||| ||||||    
T  17160335 agtaccatgaaggtgatgataaagtgaagttgattaagcttcaatcactgaggaggaaatttgagctgatgcagatggaagatgataaaaaaa 17160427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 306 - 534
Target Start/End: Original strand, 23255071 - 23255299
Alignment:
Q  306 gatcttagaaccctggttgcagaaggcatgggaaaaattgcaattgaaggcaagattggaaaaataactataattgaagatgtgatatatgttactggga 405  Q
    |||| |||||| || ||||||||||| ||||| || ||||| |||||||| |||| |||||| |||   |||||||| |||||  | |||| | || | |    
T  23255071 gatcatagaacactagttgcagaaggaatggggaatattgctattgaaggaaagaatggaaagatattaataattgaggatgtactctatgctcctagca 23255170  T
Q  406 tgcaatgtaacttgctcagtgtaggtcaacttgtgcaaaaaggttactcagtaataatgatgtttaattctttgaaactggttgataaaaatcaaaggtt 505  Q
    || | ||||| ||| | |||||  ||||  | || |||||||| |||| |||||| || | |  ||| ||  |||||||| ||||||| |||||| ||||    
T  23255171 tgaagtgtaatttgttaagtgttagtcagttagttcaaaaaggctactgagtaatcattaaggataactccctgaaactgtttgataagaatcaatggtt 23255270  T
Q  506 agttttgaaaactcctcttgcaaaaaata 534  Q
    ||| ||||||||||| |||||||| ||||    
T  23255271 agtgttgaaaactccccttgcaaagaata 23255299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 321 - 668
Target Start/End: Complemental strand, 27570847 - 27570500
Alignment:
Q  321 gttgcagaaggcatgggaaaaattgcaattgaaggcaagattggaaaaataactataattgaagatgtgatatatgttactgggatgcaatgtaacttgc 420  Q
    ||||||||||| ||||| || ||||| |||||||| |||| ||| ||| |  | ||||||||||| ||  | |||||| || | ||||| || |||||||    
T  27570847 gttgcagaaggaatggggaatattgctattgaaggaaagaatgggaaagtggcaataattgaagaagttctctatgttcctagaatgcagtgcaacttgc 27570748  T
Q  421 tcagtgtaggtcaacttgtgcaaaaaggttactcagtaataatgatgtttaattctttgaaactggttgataaaaatcaaaggttagttttgaaaactcc 520  Q
    | |||||||||||| |  | || ||||| |||||||| |  |||| |   ||  | || ||  || ||||| |  ||||||||||||| ||||||||||     
T  27570747 tgagtgtaggtcaattcattcagaaaggatactcagttactatgaaggacaacacctttaagttgtttgatcatcatcaaaggttagtattgaaaactct 27570648  T
Q  521 tcttgcaaaaaataaaacatttttagcaaatatgaaagttgttgaattgaaatgtttatcaacaactgtaagcaatgaagttagttggttctggtactat 620  Q
    ||||||||| |||| ||| |||    | |||||||||| ||| || ||||| ||||||||  | |  ||||   |||||| | ||||||| ||| |||||    
T  27570647 tcttgcaaagaatagaacctttcagaccaatatgaaagctgtagatttgaactgtttatctgctatggtaaaagatgaaggttgttggttatggcactat 27570548  T
Q  621 agatttggccatttaaattttagacgtctcactcaatttgttgataaa 668  Q
    |||||||| ||| | ||||||||| |||| | | |||| |||||||||    
T  27570547 agatttggtcatctcaattttagaggtcttaataaattggttgataaa 27570500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 144
Target Start/End: Complemental strand, 17881394 - 17881256
Alignment:
Q  6 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 105  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| || || |||||||||||||| ||  |||| |||||||||||||| || |||  |||    
T  17881394 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatcactgagaaggaaatttgagctattgcaaatggaagatgatcataagatttatga 17881295  T
Q  106 ttacatatccaaactgattaatattttcaatcagatgaa 144  Q
     ||||| || ||||| || ||| || | |||||||||||    
T  17881294 atacatctctaaactcatcaatcttgtgaatcagatgaa 17881256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 27571647 - 27571563
Alignment:
Q  6 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatga 90  Q
    ||||||||||| ||||||| || || ||   ||| |||||||| || || |||||||| |||||||||||||| |||||||||||    
T  27571647 agtatcatgaaggtgatgataaagtgaaattgattaagcttcaatcactgagaaggaagtttgaactgatgcaaatggaagatga 27571563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 487 - 668
Target Start/End: Original strand, 44148766 - 44148947
Alignment:
Q  487 ttgataaaaatcaaaggttagttttgaaaactcctcttgcaaaaaataaaacatttttag-caaatatgaaagttgttgaattgaaatgtttatcaacaa 585  Q
    |||||||  |||||||||||||||||||||||||||||||||| |||| ||| |||| || | |||||||||| ||| ||| |||| ||||||||  | |    
T  44148766 ttgataatcatcaaaggttagttttgaaaactcctcttgcaaagaatagaac-ttttcagaccaatatgaaagctgtagaactgaactgtttatctgcta 44148864  T
Q  586 ctgtaagcaatgaagttagttggttctggtactatagatttggccatttaaattttagacgtctcactcaatttgttgataaa 668  Q
      ||||   |||||| ||||||||| ||| ||||||||||||| ||| | ||||||||| |||| | |||||| |||||||||    
T  44148865 tggtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaa 44148947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 44147800 - 44147938
Alignment:
Q  6 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 105  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||| || |||  |||    
T  44147800 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga 44147899  T
Q  106 ttacatatccaaactgattaatattttcaatcagatgaa 144  Q
     ||||| || ||||| || ||| || | |||||||||||    
T  44147900 gtacatctctaaactcatcaatcttgtgaatcagatgaa 44147938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 271
Target Start/End: Original strand, 20290246 - 20290509
Alignment:
Q  8 tatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttgatt 107  Q
    ||||||||| ||||||| |||||  ||||||| |||||||||||  | |||||||| ||| || ||||||| ||||| |||||  | || |||| |||||    
T  20290246 tatcatgaaggtgatgataaggtggagcagataaagcttcagtcattgagaaggaagtttaaattgatgcaaatggaggatgagaagaagattgctgatt 20290345  T
Q  108 acatatccaaactgattaatattttcaatcagatgaacacatgcagttaaacaatttcagattaacatattgtttagaagatcatgtgaactctatcccc 207  Q
    |||| |||||||| || ||| || | |||||||| ||  | |   |  ||  | || ||||| |||| |||||| |||| |||||| |||| ||||| ||    
T  20290346 acatctccaaactaatcaatgttgtaaatcagataaaagcttatggagaagtagttacagatcaacaaattgttgagaaaatcatgagaacactatctcc 20290445  T
Q  208 aagatttgatttcatagttatggctatttaagaatcaaaggacatgaaaaccatgaagattgaa 271  Q
    |||||||||||| |||||  | || ||| | |||||||||||  |||||||  |||||||||||    
T  20290446 aagatttgattttatagtggttgcaattcatgaatcaaaggatgtgaaaactttgaagattgaa 20290509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 31355421 - 31355506
Alignment:
Q  6 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgat 91  Q
    ||||||||||| ||||||| || || |||  ||| || |||||||| || |||||||||||||| |||||||||||||||||||||    
T  31355421 agtatcatgaaggtgatgataaagtgaagatgattaaacttcagtcactgagaaggaaatttgagctgatgcagatggaagatgat 31355506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 488 - 668
Target Start/End: Original strand, 31356371 - 31356551
Alignment:
Q  488 tgataaaaatcaaaggttagttttgaaaactcctcttgcaaaaaataaaacatttttag-caaatatgaaagttgttgaattgaaatgtttatcaacaac 586  Q
    ||||||| ||||||||||||| |||||||||||||||||||| |||| ||| |||| || | |||||||||| ||| || ||||| ||||||||  | |     
T  31356371 tgataaacatcaaaggttagtattgaaaactcctcttgcaaagaatagaac-ttttcagaccaatatgaaagctgtagagttgaactgtttatctgctat 31356469  T
Q  587 tgtaagcaatgaagttagttggttctggtactatagatttggccatttaaattttagacgtctcactcaatttgttgataaa 668  Q
     ||||   || ||| ||| ||||| ||| ||||||||||||| ||| | ||||||||| |||| | |||||| | |||||||    
T  31356470 ggtaaaagataaagatagctggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggatgataaa 31356551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 496 - 762
Target Start/End: Original strand, 27187853 - 27188119
Alignment:
Q  496 atcaaaggttagttttgaaaactcctcttgcaaaaaataaaacatttttag-caaatatgaaagttgttgaattgaaatgtttatcaacaactgtaagca 594  Q
    ||||||||||||| |||||||||||||||||||| |||| ||| |||| || | |||||||||| ||| || ||||| ||||||||  | |  ||||       
T  27187853 atcaaaggttagtattgaaaactcctcttgcaaagaatagaac-ttttcagaccaatatgaaagctgtagagttgaactgtttatctgctatggtaaaag 27187951  T
Q  595 atgaagttagttggttctggtactatagatttggccatttaaattttagacgtctcactcaatttgttgataaataattgatccaaggagcacc-aaaat 693  Q
    |||||| ||  | ||| ||| ||||||||||||| ||| | ||||||||| |||| | |||||| ||||||||| || |||| |  |||| ||| |||||    
T  27187952 atgaagataactagttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgattctgggagtacctaaaat 27188051  T
Q  694 tgaatgtaccagagaaagtttgtgatgtttgcttgatagacaagcaacctagaaatgcattaagttcaa 762  Q
    || |  ||||  | | ||||||||||  ||||||| | | |||||||||||||| |||||| |||||||    
T  27188052 tg-agatacctaacagagtttgtgatacttgcttgttgggcaagcaacctagaagtgcattcagttcaa 27188119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 43683094 - 43683007
Alignment:
Q  6 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatca 93  Q
    ||||||||||| ||||||| || || |||  ||| || ||||| || || |||||||||||||||||||| || ||||||||||||||    
T  43683094 agtatcatgaaggtgatgataaagtgaagttgattaaacttcaatcactgagaaggaaatttgaactgatacaaatggaagatgatca 43683007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 27186881 - 27187019
Alignment:
Q  6 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 105  Q
    ||||||||||| ||| ||| || || |||  ||| |||||||| || || |||||||||||||| ||| |||| |||||||||||||| || |||  |||    
T  27186881 agtatcatgaaggtggtgataaagtgaagttgattaagcttcaatcactgagaaggaaatttgagctggtgcaaatggaagatgatcagaagatttctga 27186980  T
Q  106 ttacatatccaaactgattaatattttcaatcagatgaa 144  Q
     ||||| || ||||| || ||| || | |||||||||||    
T  27186981 atacatctctaaactcatcaatcttgtgaatcagatgaa 27187019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 319 - 433
Target Start/End: Original strand, 44148598 - 44148712
Alignment:
Q  319 tggttgcagaaggcatgggaaaaattgcaattgaaggcaagattggaaaaataactataattgaagatgtgatatatgttactgggatgcaatgtaactt 418  Q
    ||||||||||||| ||||| || ||||| |||||||| |||| ||| ||| |  | ||||||||||| ||  | |||||| |||| ||||| || || ||    
T  44148598 tggttgcagaaggaatggggaatattgctattgaaggaaagaatgggaaagtggcaataattgaagaagttctctatgttcctggaatgcagtgcaattt 44148697  T
Q  419 gctcagtgtaggtca 433  Q
    ||| |||||||||||    
T  44148698 gctgagtgtaggtca 44148712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 487 - 668
Target Start/End: Original strand, 21848831 - 21849012
Alignment:
Q  487 ttgataaaaatcaaaggttagttttgaaaactcctcttgcaaaaaataaaacatttttag-caaatatgaaagttgttgaattgaaatgtttatcaacaa 585  Q
    |||||||  |||||||||||||||||||||||||||||||||| |||| ||| |||| || | |||||||||| ||| |||||||| ||||||||  | |    
T  21848831 ttgataatcatcaaaggttagttttgaaaactcctcttgcaaagaatagaac-ttttcagaccaatatgaaagctgtagaattgaactgtttatctgcta 21848929  T
Q  586 ctgtaagcaatgaagttagttggttctggtactatagatttggccatttaaattttagacgtctcactcaatttgttgataaa 668  Q
      ||||   |||||| ||| ||||| ||| ||||||||||||| ||| | ||||||||| |||| | |||||| |||||||||    
T  21848930 tggtaaaagatgaagatagctggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaa 21849012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 43548457 - 43548595
Alignment:
Q  6 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 105  Q
    ||||||||||| ||||||| || || ||   ||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||||| |||  |||    
T  43548457 agtatcatgaaggtgatgataaagtgaaattgattaagcttcaatcactaagaaggaaatttgagctgatgcagatggaagatgatcaaaagatttctga 43548556  T
Q  106 ttacatatccaaactgattaatattttcaatcagatgaa 144  Q
     |||||||| ||||| || ||| || | |||||||||||    
T  43548557 atacatatctaaactcatcaatcttgtgaatcagatgaa 43548595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 319 - 668
Target Start/End: Complemental strand, 54170461 - 54170112
Alignment:
Q  319 tggttgcagaaggcatgggaaaaattgcaattgaaggcaagattggaaaaataactataattgaagatgtgatatatgttactgggatgcaatgtaactt 418  Q
    ||||||||||||| ||||| || ||||| |||||||| |||| ||| ||| |  | ||||||||||| ||  | |||||| |||| ||||| || || ||    
T  54170461 tggttgcagaaggaatggggaatattgctattgaaggaaagaatgggaaagtggcaataattgaagaagttctctatgttcctggaatgcagtgcaattt 54170362  T
Q  419 gctcagtgtaggtcaacttgtgcaaaaaggttactcagtaataatgatgtttaattctttgaaactggttgataaaaatcaaaggttagttttgaaaact 518  Q
    ||| |||||||||||  |  | || ||||| |||||||| |  |||| |   ||  | || ||  || |||||||  |||||||||||||||||||||||    
T  54170361 gctgagtgtaggtcagttcattcagaaaggatactcagttactatgaaggacaacacctttaagttgtttgataatcatcaaaggttagttttgaaaact 54170262  T
Q  519 cctcttgcaaaaaataaaacatttttag-caaatatgaaagttgttgaattgaaatgtttatcaacaactgtaagcaatgaagttagttggttctggtac 617  Q
    ||||||||||| |||| ||| |||| || | |||||||||| ||| ||| |||| ||||||||  | |  ||||   |||||| ||||||||| ||| ||    
T  54170261 cctcttgcaaagaatagaac-ttttcagaccaatatgaaagctgtagaactgaactgtttatctgctatggtaaaagatgaagatagttggttatggcac 54170163  T
Q  618 tatagatttggccatttaaattttagacgtctcactcaatttgttgataaa 668  Q
    ||||||||||| ||| | ||||||||| |||| | |||||| |||||||||    
T  54170162 tatagatttggtcatctcaattttagaggtcttaatcaattggttgataaa 54170112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 26 - 144
Target Start/End: Complemental strand, 22931202 - 22931084
Alignment:
Q  26 aaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttgattacatatccaaactgatta 125  Q
    ||||| |||||||| ||||||||||   ||||||||||||||||  ||||||| |||||||||||  |||| |||||||||||||| ||||  |||||||    
T  22931202 aaggtgaagcagataaagcttcagttattaagaaggaaatttgagttgatgcaaatggaagatgagaaaaagattgttgattacatctccatgctgatta 22931103  T
Q  126 atattttcaatcagatgaa 144  Q
    || || | |||||||||||    
T  22931102 atgttgtaaatcagatgaa 22931084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 6 - 144
Target Start/End: Complemental strand, 54171259 - 54171121
Alignment:
Q  6 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 105  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||| |||  |||    
T  54171259 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcaaaagatttctga 54171160  T
Q  106 ttacatatccaaactgattaatattttcaatcagatgaa 144  Q
     ||||| || ||||| || ||| || | |||||||||||    
T  54171159 gtacatctctaaactcatcaatcttgtgaatcagatgaa 54171121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 470 - 580
Target Start/End: Complemental strand, 22930272 - 22930162
Alignment:
Q  470 taattctttgaaactggttgataaaaatcaaaggttagttttgaaaactcctcttgcaaaaaataaaacatttttagcaaatatgaaagttgttgaattg 569  Q
    ||||||||||||  || ||||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||   |  |||||||||||| | |||||    
T  22930272 taattctttgaagttgtttgataagaatcaaaggttagttatgaaaactccccttgcaaagaataaaacattttagactgatatgaaagttgctaaattg 22930173  T
Q  570 aaatgtttatc 580  Q
    || || |||||    
T  22930172 aattgcttatc 22930162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 21847870 - 21847957
Alignment:
Q  6 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatca 93  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| ||||| |||||||||||||| |||||||| ||||||||||||||    
T  21847870 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatca 21847957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 496 - 762
Target Start/End: Original strand, 9699296 - 9699562
Alignment:
Q  496 atcaaaggttagttttgaaaactcctcttgcaaaaaataaaacatttttag-caaatatgaaagttgttgaattgaaatgtttatcaacaactgtaagca 594  Q
    ||||||||||||| |||||||||||||||||||| |||| ||| |||| || | |||||||||| ||| || ||||| ||||||||  | |  ||||       
T  9699296 atcaaaggttagtattgaaaactcctcttgcaaagaatagaac-ttttcagaccaatatgaaagctgtagagttgaactgtttatctgctatggtaaaag 9699394  T
Q  595 atgaagttagttggttctggtactatagatttggccatttaaattttagacgtctcactcaatttgttgataaataattgatccaaggagcacc-aaaat 693  Q
    |||||| ||  | ||| ||| ||||||||||||| ||| | ||||||||| |||| | |||||| ||||||||| || |||| |  |||| ||| |||||    
T  9699395 atgaagataactagttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgattctgggagtacctaaaat 9699494  T
Q  694 tgaatgtaccagagaaagtttgtgatgtttgcttgatagacaagcaacctagaaatgcattaagttcaa 762  Q
    || |  ||||  | | ||||||||||  ||||||| | | |||||||||||||| |||||| |||||||    
T  9699495 tg-agatacctaacagagtttgtgatacttgcttgttgggcaagcaacctagaagtgcattcagttcaa 9699562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 487 - 696
Target Start/End: Original strand, 43551500 - 43551710
Alignment:
Q  487 ttgataaaaatcaaaggttagttttgaaaactcctcttgcaaaaaataaaacatttttag-caaatatgaaagttgttgaattgaaatgtttatcaacaa 585  Q
    |||||||  ||||||||||||| ||||||| ||||||||||||||||| ||| |||| || | |||||||||| ||| || || || ||||||||  | |    
T  43551500 ttgataatcatcaaaggttagtattgaaaattcctcttgcaaaaaatagaac-ttttcagaccaatatgaaagctgtagagttaaattgtttatctgcta 43551598  T
Q  586 ctgtaagcaatgaagttagttggttctggtactatagatttggccatttaaattttagacgtctcactcaatttgttgataaataattgatccaaggagc 685  Q
      || |   |||||| ||| ||||| ||| ||||||||||||| ||| | ||||||||| |||| | |||||| ||||||||| || |||| | |||||     
T  43551599 tggttaaagatgaagatagctggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgattctaggagt 43551698  T
Q  686 acc-aaaattga 696  Q
    ||| ||||||||    
T  43551699 acctaaaattga 43551710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 756564 - 756702
Alignment:
Q  6 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 105  Q
    ||||||||||| ||||||| || || ||   ||| |||||||| || || || || |||||||| |||||||||||||||| |||||| || |||  |||    
T  756564 agtatcatgaaggtgatgataaagtgaaattgattaagcttcaatcactgaggagtaaatttgagctgatgcagatggaagttgatcacaagatttctga 756663  T
Q  106 ttacatatccaaactgattaatattttcaatcagatgaa 144  Q
     ||||| |||||||| || ||| || | |||||||||||    
T  756664 atacatctccaaactcatcaatcttgtgaatcagatgaa 756702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 9698323 - 9698461
Alignment:
Q  6 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 105  Q
    ||||||||||| ||| ||| || || |||  ||| |||||||| || || |||||||||||||| ||| |||| |||||||||||||| || |||  |||    
T  9698323 agtatcatgaaggtggtgataaagtgaagttgattaagcttcaatcactgagaaggaaatttgagctggtgcaaatggaagatgatcagaagatttctga 9698422  T
Q  106 ttacatatccaaactgattaatattttcaatcagatgaa 144  Q
     ||||| || ||||| || ||| || | |||||||||||    
T  9698423 atacatctctaaactcatcaatcttgtgaatcagatgaa 9698461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 470 - 587
Target Start/End: Complemental strand, 2682364 - 2682247
Alignment:
Q  470 taattctttgaaactggttgataaaaatcaaaggttagttttgaaaactcctcttgcaaaaaataaaacatttttagcaaatatgaaagttgttgaattg 569  Q
    ||||||| | ||||||||| ||||||||||||| ||| | ||||||||||| |||| | | |||| |||||||  |||  ||||||||| | | || |||    
T  2682364 taattctctaaaactggttcataaaaatcaaagcttattattgaaaactccacttggagagaatagaacatttcaagcttatatgaaagctatagagttg 2682265  T
Q  570 aaatgtttatcaacaact 587  Q
    || ||||| |||||||||    
T  2682264 aagtgtttgtcaacaact 2682247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 487 - 668
Target Start/End: Original strand, 26313221 - 26313402
Alignment:
Q  487 ttgataaaaatcaaaggttagttttgaaaactcctcttgcaaaaaataaaacatttttag-caaatatgaaagttgttgaattgaaatgtttatcaacaa 585  Q
    |||||||  |||||||||||||||||||||||||||||||||| |||| ||| |||| || | |||||||||| ||| ||| |||| ||||||||  | |    
T  26313221 ttgataatcatcaaaggttagttttgaaaactcctcttgcaaagaatagaac-ttttcagaccaatatgaaagctgtagaactgaactgtttatctgcta 26313319  T
Q  586 ctgtaagcaatgaagttagttggttctggtactatagatttggccatttaaattttagacgtctcactcaatttgttgataaa 668  Q
      ||||   |||||| ||||||||| ||| ||||||||||||| ||| | ||||||||| |||| | |||||| |||||||||    
T  26313320 tggtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaa 26313402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 487 - 668
Target Start/End: Original strand, 39795603 - 39795784
Alignment:
Q  487 ttgataaaaatcaaaggttagttttgaaaactcctcttgcaaaaaataaaacatttttag-caaatatgaaagttgttgaattgaaatgtttatcaacaa 585  Q
    |||||||  |||||||||||||||||||||||||||||||||| |||| ||| |||| || | |||||||||| ||| ||| |||| ||||||||  | |    
T  39795603 ttgataatcatcaaaggttagttttgaaaactcctcttgcaaagaatagaac-ttttcagaccaatatgaaagctgtagaactgaactgtttatctgcta 39795701  T
Q  586 ctgtaagcaatgaagttagttggttctggtactatagatttggccatttaaattttagacgtctcactcaatttgttgataaa 668  Q
      ||||   |||||| ||||||||| ||| ||||||||||||| ||| | ||||||||| |||| | |||||| |||||||||    
T  39795702 tggtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaa 39795784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 39794637 - 39794775
Alignment:
Q  6 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 105  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||| || |||  |||    
T  39794637 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga 39794736  T
Q  106 ttacatatccaaactgattaatattttcaatcagatgaa 144  Q
     ||||| || ||||| || ||| || | |||||||||||    
T  39794737 gtacatctctaaactcatcaatcttgtgaatcagatgaa 39794775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 26312255 - 26312393
Alignment:
Q  6 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 105  Q
    ||||||||||| ||||||| || || |||  ||| ||||| || ||||| |||||||||||||| |||||||| |||||||||||||| || |||  |||    
T  26312255 agtatcatgaaggtgatgataaagtgaagttgattaagctccaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga 26312354  T
Q  106 ttacatatccaaactgattaatattttcaatcagatgaa 144  Q
     ||||| || ||||| || ||| || | |||||||||||    
T  26312355 gtacatctctaaactcatcaatcttgtgaatcagatgaa 26312393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 271
Target Start/End: Original strand, 36617812 - 36617875
Alignment:
Q  208 aagatttgatttcatagttatggctatttaagaatcaaaggacatgaaaaccatgaagattgaa 271  Q
    ||||||||||||||||||| | |  ||| |||||||||||||  ||||||| ||||||||||||    
T  36617812 aagatttgatttcatagttgttgtcattcaagaatcaaaggatgtgaaaactatgaagattgaa 36617875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 319 - 433
Target Start/End: Original strand, 26313053 - 26313167
Alignment:
Q  319 tggttgcagaaggcatgggaaaaattgcaattgaaggcaagattggaaaaataactataattgaagatgtgatatatgttactgggatgcaatgtaactt 418  Q
    ||||||||||||| ||||| || ||||| |||||||| |||| ||| ||| |  | ||||||||||| ||  | |||||| |||| ||||| || || ||    
T  26313053 tggttgcagaaggaatggggaatattgctattgaaggaaagaatgggaaagtggcaataattgaagaagttctctatgttcctggaatgcagtgcaattt 26313152  T
Q  419 gctcagtgtaggtca 433  Q
    ||| |||||||||||    
T  26313153 gctgagtgtaggtca 26313167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 319 - 433
Target Start/End: Original strand, 39795435 - 39795549
Alignment:
Q  319 tggttgcagaaggcatgggaaaaattgcaattgaaggcaagattggaaaaataactataattgaagatgtgatatatgttactgggatgcaatgtaactt 418  Q
    ||||||||||||| ||||| || ||||| |||||||| |||| ||| ||| |  | ||||||||||| ||  | |||||| |||| ||||| || || ||    
T  39795435 tggttgcagaaggaatggggaatattgctattgaaggaaagaatgggaaagtggcaataattgaagaagttctctatgttcctggaatgcagtgcaattt 39795534  T
Q  419 gctcagtgtaggtca 433  Q
    ||| |||||||||||    
T  39795535 gctgagtgtaggtca 39795549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 12 - 245
Target Start/End: Complemental strand, 54325 - 54093
Alignment:
Q  12 atgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttgattacat 111  Q
    ||||| ||||||||||||| ||||||||||||||||| ||| | || ||||||||| |||||||  | ||||||||  |||| || ||||||||||||||    
T  54325 atgaaggtgatgaaaaggtgaagcagatcaagcttcaatctttgaggaggaaatttcaactgatataaatggaagaatatcataagattgttgattacat 54226  T
Q  112 atccaaactgattaatattttcaatcagatgaacacatgcagttaaacaatttcagattaacatattgtttagaagatcatgtgaactctatccccaaga 211  Q
     | |||| |||| || ||| | ||||||| |||  |||| |||   |||||||  ||| |||| |||||| | ||||| ||| |||| ||||| ||||||    
T  54225 ct-caaagtgatcaacattgtgaatcagaggaaggcatggagtgggacaatttatgatcaacaaattgttgaaaagataatgagaaccctatcaccaaga 54127  T
Q  212 tttgatttcatagttatggctatttaagaatcaa 245  Q
    ||| | ||||||||| | || ||| |||||||||    
T  54126 tttaacttcatagttgtagcaattcaagaatcaa 54093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 119
Target Start/End: Complemental strand, 64692 - 64579
Alignment:
Q  6 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 105  Q
    ||||||||||| ||||||| ||||| ||   ||| |||||||| || || || ||||||||||| ||||||||||||||||||||||| || |||  |||    
T  64692 agtatcatgaaggtgatgataaggtgaaattgattaagcttcaatcactgaggaggaaatttgagctgatgcagatggaagatgatcagaagatttctga 64593  T
Q  106 ttacatatccaaac 119  Q
     ||||| |||||||    
T  64592 atacatctccaaac 64579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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