View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14272_low_5 (Length: 317)
Name: NF14272_low_5
Description: NF14272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14272_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 1304671 - 1304358
Alignment:
| Q |
1 |
ttttggactaaaaatagttaaaatttgaattaaaataaatcaaacatgaagaggaaaacctcttccaacattagcattaaacccaacactaaacccaatt |
100 |
Q |
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| T |
1304671 |
ttttggactaaaaatagttaaaatttgaattaaaataaatcaaacatgaagaggaaaacctcttccaacattagcattaaacccaacactaaacccaatt |
1304572 |
T |
|
| Q |
101 |
aactctttcttataaggtaaatacgattttaccctcgtctctttctttcttccataaaacacttctatcgccgacactgtcgccggagttttcttctccg |
200 |
Q |
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| T |
1304571 |
aactctttcttataaggtaaatacgattttaccctcgtctctttctttcttccataaaacacttccatcgccgacactgtcgccggagttttcttctccg |
1304472 |
T |
|
| Q |
201 |
tcgccggaatcttttttccaacaacgtttccattgccaccgctattcagctttaaattctccttttttgctggagttaccatattcaacgactcttttcc |
300 |
Q |
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| T |
1304471 |
tcgccggaatcttttttccaacaacgtttccattgccaccgctattcagctttaaattctccttttttgctggagttaccatattcaacgactcttttcc |
1304372 |
T |
|
| Q |
301 |
gtcgcctttgcttc |
314 |
Q |
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||||| |||||||| |
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| T |
1304371 |
gtcgcttttgcttc |
1304358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 38 - 314
Target Start/End: Complemental strand, 1294084 - 1293808
Alignment:
| Q |
38 |
aatcaaacatgaagaggaaaacctcttccaacattagcattaaacccaacactaaacccaattaactctttcttataaggtaaatacgattttaccctcg |
137 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1294084 |
aatcaaacatgaagaggaaaacctcttccaatattagcattaaaaccaacactaaacccaattaactctttcttatatggtaaatacgattttaccctcg |
1293985 |
T |
|
| Q |
138 |
tctctttctttcttccataaaacacttctatcgccgacactgtcgccggagttttcttctccgtcgccggaatcttttttccaacaacgtttccattgcc |
237 |
Q |
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|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| || | |
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| T |
1293984 |
actctttctttcttctataaaacacttccatcgccgacactgtcgccggagttttcttctccgttaccggaatcttttttccggcaacgttt---ttttc |
1293888 |
T |
|
| Q |
238 |
accgctattcag---ctttaaattctccttttttgctggagttaccatattcaacgactcttttccgtcgcctttgcttc |
314 |
Q |
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||| |||||||| |||||||||||||||||| | ||||||| | |||||| |||||||||||||||| |||||||| |
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| T |
1293887 |
accactattcagcttctttaaattctcctttttcaccggagttaataaattcaaagactcttttccgtcgcttttgcttc |
1293808 |
T |
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