View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14272_low_8 (Length: 287)
Name: NF14272_low_8
Description: NF14272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14272_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 13 - 270
Target Start/End: Complemental strand, 21404590 - 21404333
Alignment:
| Q |
13 |
aatattatcaaaggccaaatattgtaagcacaagaaaattaagaaaagagagtcatgtctagccaaagaaactcaagagattcaaagttgaaagagaaac |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21404590 |
aatattatcaaaggccaaatattgtaagcacaagaaaattaagaaaagagagtcatgtctagccaaagaaactcaagagattcaaagttgaaagagaaac |
21404491 |
T |
|
| Q |
113 |
agattaatgatcttgtgtcaaggttacaactactattgcctcagctgaaccaaagaaacaactcaagggtatgattaatttgatcatgtccaagaaacta |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21404490 |
agattaatgatcttgtgtcaaggttacaactactattgcctcagctgaaccaaagaaacaactcaagggtatgattaatttgatcatgtccaagaaacta |
21404391 |
T |
|
| Q |
213 |
gtgaattcatatttgcatgctctacataattacatacattgtttccaatagttaattc |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21404390 |
gtgaattcatatttgcatgctctacataattacatacattgtttccaatagttaattc |
21404333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University