View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14274_high_1 (Length: 607)
Name: NF14274_high_1
Description: NF14274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14274_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 547; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 20 - 599
Target Start/End: Original strand, 47421412 - 47421987
Alignment:
| Q |
20 |
aaagttgccaccactgatttcatatggcaatgggaaatgaatatgttgttgttgctgattataaaagccttgtgtgcaaactggggtgttttcagtttct |
119 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47421412 |
aaagttgcaaccactgatttcatatggcaatgggaaatgaatatgttgttgttgctgattataaaagccttgtgtgcaaactggggtgttttcagtttct |
47421511 |
T |
|
| Q |
120 |
tgactaatggtgttagaactggatggtagtaattgagttggttccactactcgaacatcatgttcctgagattttttagcactgatgtccatagttgaat |
219 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47421512 |
tgactaatggtgttagaactggatggtagtaattgagttggttccactactcgaacatcatgttcctgagattttttagcactgatgtccatagttgaat |
47421611 |
T |
|
| Q |
220 |
agcttggctcactcttcacttggatagctgaagaagcattatgagaatggtctgcagcagcattcgtacttctctgatgtagttgtgctaatgcatcggg |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
47421612 |
agcttggctcactcttcacttggatagctgaagaagcattatgagaatggtctgcagcagcattcgtacttctctgatgtagttgtgctaatgcatcagg |
47421711 |
T |
|
| Q |
320 |
accattaaattttgttccactggaagtaacagttggcatccttacagggggctgctgtccagaagaacctgtattggtttttgtctgcaagaaaaaggat |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
47421712 |
accattaaattttgttccactggaagtaacagttggcatccttacagggggctgctgtccagaagaacctgtattggtttttgt----aagaaaaaggat |
47421807 |
T |
|
| Q |
420 |
ggttcttagcataatgtttaaatctatctttaaccaccttaagaaaacacattgtaagataaagtaaactatctattctacctacctgttgttgcacttt |
519 |
Q |
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|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47421808 |
ggttcttagcataacgttgaaatctatctttaaccaccttaagaaaacacattgtaagataaagtaaactatctattctacctacctgttgttgcacttt |
47421907 |
T |
|
| Q |
520 |
tgctaatgctatcctaagcatcggatcccccacaatccctttcataagccgtacaaaatgttctttcggtatttcatctc |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47421908 |
tgctaatgctatcctaagcatcggatcccccacaatccctttcataagccgtacaaaatgttctttcggtatttcatctc |
47421987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 109 - 599
Target Start/End: Original strand, 47390682 - 47391152
Alignment:
| Q |
109 |
tttcagtttcttgactaatggtgttagaactggatggtagtaattgagttggttccactactcgaacatcatgttcctgagattttttagcactgatgtc |
208 |
Q |
| |
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|||||||||||||||||| | |||||||||||| | |||||||| ||| || |||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
47390682 |
tttcagtttcttgactaacagcaatagaactggatgttggtaattgatttgattgcactactcgaacatcatgttcctgaggttttttagcactgatgtc |
47390781 |
T |
|
| Q |
209 |
catagttgaatagcttggctcactcttcacttggatagctgaagaagcattatgagaatggtctgcagcagcattcgtacttctctgatgtagttgtgct |
308 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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|
| T |
47390782 |
catagttgaataggttggctcactcttcacttggatagctgaagaagcattatgagaatggtctgcagcagcattcatacttctctgatgcagttgtgct |
47390881 |
T |
|
| Q |
309 |
aatgcatcgggaccattaaattttgttccactggaagtaacagttggcatccttacagggggctgctgtccagaagaacctgtattggtttttgtctgca |
408 |
Q |
| |
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||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47390882 |
aatgcatggggatcgttaaattttgttccactggaagtaacagttggcatccttacagggggctgctgtccagaagaacctgtattggtttttgtctgca |
47390981 |
T |
|
| Q |
409 |
agaaaaaggatggttcttagcataatgtttaaatctatctttaaccaccttaagaaaacacattgtaagataaagtaaactatctattctacctacctgt |
508 |
Q |
| |
|
| ||||||||||||||||||||||| ||| |||||||||| ||||||||||| ||| ||| ||||||||| ||||||||| |
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|
| T |
47390982 |
ataaaaaggatggttcttagcataacgttgaaatctatctctaaccaccttaggaa--------------------aaatcatctattctgcctacctgt |
47391061 |
T |
|
| Q |
509 |
tgttgcacttttgctaatgctatcctaagcatcggatcccccacaatccctttcataagccgtacaaaatgttctttcggtatttcatctc |
599 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
47391062 |
tgttgcacttttgttaatgctatcctaagcatctgatcccccacaatccctttcataagccgtacaaaatgttctttaggtatttcatctc |
47391152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 22 - 599
Target Start/End: Original strand, 47418955 - 47419515
Alignment:
| Q |
22 |
agttgccaccactgatttcatatggcaatgggaaatgaatatgttgttgttgctgattataaaagccttgtgtgcaaactggggtgttttcagtttcttg |
121 |
Q |
| |
|
|||| ||||||||| || |||||| | |||||||||| ||||| ||||||||||| |||| || |||||| || || | || ||||||||||||| |
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|
| T |
47418955 |
agttaccaccactgcttccatatgtcgatgggaaatgtatatgctgttgttgctgcttattaaggccttgcatgtgaatggtggatctttcagtttcttg |
47419054 |
T |
|
| Q |
122 |
actaatggtgttagaactggatggtagtaattgagttggttccactactcgaacatcatgttcctgagattttttagcactgatgtccatagttgaatag |
221 |
Q |
| |
|
|||||| | |||||||||||| | |||||||| ||| || ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
47419055 |
actaatagcaatagaactggatgttggtaattgatttgattgcacgactcgaacatcatgttcctgaggttttttagcactgatgtccatagttgaatag |
47419154 |
T |
|
| Q |
222 |
cttggctcactcttcacttggatagctgaagaagcattatgagaatggtctgcagcagcattcgtacttctctgatgtagttgtgctaatgcatcgggac |
321 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||| |
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|
| T |
47419155 |
gttggctcactctttacttggatagctgaagaagcattatgagaatggtctgcagctgcattccagcttctctgatgcagttgtgctaatgcatcgggat |
47419254 |
T |
|
| Q |
322 |
cattaaattttgttccactggaagtaacagttggcatccttacagggggctgctgt---ccagaagaacctgtattggtttttgtctgcaagaaaaagga |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
47419255 |
cattaaattttgttccactggaagtaacagtagaaatccttacagggggctgctgtccaccagaagaacctgtgttggtttttgtctacaagaaaaagga |
47419354 |
T |
|
| Q |
419 |
tggttcttagcataatgtttaaatctatctttaaccaccttaagaaaacacattgtaagataaagtaaactatctattctacctacctgttgttgcactt |
518 |
Q |
| |
|
|||||||||||||| ||| ||| |||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
47419355 |
cggttcttagcataacgttgaaacctatctctaaccaccttaagaaaaaac--------------------atctattctacctacctgttgttgcactt |
47419434 |
T |
|
| Q |
519 |
ttgctaatgctatcctaagcatcggatcccccacaatccctttcataagccgtacaaaatgttctttcggtatttcatctc |
599 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
47419435 |
ttgctaatgctatcctaagcatctgatcccccacaatccctttcataagccgtacaaaatgttctttgggcatttcatctc |
47419515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 20 - 599
Target Start/End: Original strand, 47407707 - 47408286
Alignment:
| Q |
20 |
aaagttgccaccactgatttcatatggcaatgggaaatgaatatgttgttgttgctgattataaaagccttgtgtgcaaactggggtgttttcagtttct |
119 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
47407707 |
aaagttgccaccactgatttcatatggcgatggaaaatgtatatgttgttgttgctgattataaaagccttgtgtgtgaactggggtgttttcagtttct |
47407806 |
T |
|
| Q |
120 |
tgactaatggtgttagaactggatggtagtaattgagttggttccactactcgaacatcatgttcctgagattttttagcactgatgtccatagttgaat |
219 |
Q |
| |
|
|||| ||||||||||||||| ||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||| ||| |||||||||||||||| |
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|
| T |
47407807 |
tgacaaatggtgttagaactagatggcagtaattgagttggttccactgcttgaacatcatgttcctgagattttttagtactaatgtccatagttgaat |
47407906 |
T |
|
| Q |
220 |
agcttggctcactcttcacttggatagctgaagaagcattatgagaatggtctgcagcagcattcgtacttctctgatgtagttgtgctaatgcatcggg |
319 |
Q |
| |
|
| | ||| || ||||||||||||| |||||||| ||||||||||||||| |||||||||||| |||||||| |||| |||| | ||| ||||| ||| |
|
|
| T |
47407907 |
aagtcggcccagtcttcacttggattactgaagaattattatgagaatggtccgcagcagcattcatacttctcggatgcagttttactattgcatgggg |
47408006 |
T |
|
| Q |
320 |
accattaaattttgttccactggaagtaacagttggcatccttacagggggctgctgtccagaagaacctgtattggtttttgtctgcaagaaaaaggat |
419 |
Q |
| |
|
| ||||||||| || | | | ||||||||||||||||| |||| |||| |||| |||||||||||||| ||||||| |||| ||||||||||||| || |
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|
| T |
47408007 |
atcattaaattgtgctggaattgaagtaacagttggcatgcttatagggtgctgttgtccagaagaacccgtattggattttatctgcaagaaaaacaat |
47408106 |
T |
|
| Q |
420 |
ggttcttagcataatgtttaaatctatctttaaccaccttaagaaaacacat-tgtaagataaagtaaactatctattctacctacctgttgttgcactt |
518 |
Q |
| |
|
|||||||||||||| ||| |||||||| || || | |||||| |||| |||| |||||| ||||| | || ||||||||||||||| ||||||| |
|
|
| T |
47408107 |
ggttcttagcataacgttgaaatctatattcaatcgccttaa-aaaaaacatctgtaaggctgcataaaccacatactctacctacctgttgctgcactt |
47408205 |
T |
|
| Q |
519 |
ttgctaatgctatcctaagcatcggatcccccacaatccctttcataagccgtacaaaatgttctttcggtatttcatctc |
599 |
Q |
| |
|
|| ||||||| |||||| |||| ||||| ||||||||||||||| ||||| |||| | || ||||| | ||||||||||| |
|
|
| T |
47408206 |
ctgttaatgctttcctaatcatctgatcctccacaatccctttcaaaagccttacacactgatctttggatatttcatctc |
47408286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 576
Target Start/End: Original strand, 47424605 - 47424696
Alignment:
| Q |
485 |
aaactatctattctacctacctgttgttgcacttttgctaatgctatcctaagcatcggatcccccacaatccctttcataagccgtacaaa |
576 |
Q |
| |
|
|||| ||||| ||||| ||||||||| ||||||| || ||||| | |||||||| | | ||||||||| |||||||||||||||||||| |
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|
| T |
47424605 |
aaaccatctaatctacgtacctgttggtgcacttctgttaatgttgatataagcatctgcttccccacaatgcctttcataagccgtacaaa |
47424696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 204 - 271
Target Start/End: Complemental strand, 46796380 - 46796313
Alignment:
| Q |
204 |
atgtccatagttgaatagcttggctcactcttcacttggatagctgaagaagcattatgagaatggtc |
271 |
Q |
| |
|
||||||||| |||||||| | ||||||||||||||||| | ||||||||||| | ||||||||||||| |
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|
| T |
46796380 |
atgtccataattgaataggtcggctcactcttcacttgaagagctgaagaagtaatatgagaatggtc |
46796313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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