View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14274_high_3 (Length: 440)
Name: NF14274_high_3
Description: NF14274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14274_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 104 - 427
Target Start/End: Original strand, 9949955 - 9950280
Alignment:
| Q |
104 |
aacaaagtgctttatagggcaaataaagggtttggcggaagatacggtgttttgaatacgagggtacaataatcctatattgaaagagctcatgaaaaat |
203 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9949955 |
aacaaagtgctttatggggtaaataaagggtttggcggaagatacggtgttttgaatacgagggtacaataatcctatattgaaagagctcatgaaaaat |
9950054 |
T |
|
| Q |
204 |
cc-aaaaaagaagtgagataatgtacgtcggacttggatcctctccgatgagaatttcaatgcaggctgcccaatgtagatttgaacctttaattacctt |
302 |
Q |
| |
|
|| ||||||||||||||||| ||||| | |||||||||||||||||| |||||||||||||| |||||| ||||| ||||| |||||||||||||||| | |
|
|
| T |
9950055 |
ccaaaaaaagaagtgagatagtgtacttgggacttggatcctctccggtgagaatttcaatggaggctgtccaatatagatatgaacctttaattaccct |
9950154 |
T |
|
| Q |
303 |
tttaataaatattaatgcctgcaatgnnnnnnnttaaatggcctggatttcgcttgagaacactttaaca-gagagaatctcctcccgtgtacttcatct |
401 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9950155 |
tttaataaatattaatgcctgcaatgaaaaaaattaaatggcttggatttcacttgagagcactttaacaggagagaatctcctcccgtgtacttcatct |
9950254 |
T |
|
| Q |
402 |
attttaaatggcaaatgtcaacatgt |
427 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
9950255 |
attttaaatggcaaatgtcaacatgt |
9950280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 9949132 - 9949243
Alignment:
| Q |
9 |
gaagaatataaatttttgggctacattaataaatgatatttccaatatcacaatagtttggctgaaattgaattcaatagagatgatagagctataacaa |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9949132 |
gaagaaaataaatttttgggctacattaataaatgatatttccaatatcacaatagtttggctgaaattgaattcaatagagatgatagagctataacaa |
9949231 |
T |
|
| Q |
109 |
agtgctttatag |
120 |
Q |
| |
|
|||||||||||| |
|
|
| T |
9949232 |
agtgctttatag |
9949243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 236 - 328
Target Start/End: Original strand, 41686899 - 41686991
Alignment:
| Q |
236 |
ttggatcctctccgatgagaatttca-atgcaggctgcccaatgtagatttgaacctttaattacctttttaataaatattaatgcctgcaatg |
328 |
Q |
| |
|
||||||||||| |||||||||||||| ||| | | || ||| ||||||| ||||| ||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
41686899 |
ttggatcctcttcgatgagaatttcacatg-atgttgtccagtgtagatctgaacttttaattacatttttaataatcattaatgcctgcaatg |
41686991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 328
Target Start/End: Original strand, 6609573 - 6609624
Alignment:
| Q |
277 |
tgtagatttgaacctttaattacctttttaataaatattaatgcctgcaatg |
328 |
Q |
| |
|
||||||| |||||||||||||||| |||| |||| ||| ||||||||||||| |
|
|
| T |
6609573 |
tgtagatctgaacctttaattacccttttcataattataaatgcctgcaatg |
6609624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 327
Target Start/End: Original strand, 34082509 - 34082549
Alignment:
| Q |
287 |
aacctttaattacctttttaataaatattaatgcctgcaat |
327 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||| |||||| |
|
|
| T |
34082509 |
aacctttaattacccttttaataattattaatgcttgcaat |
34082549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University