View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14274_high_4 (Length: 270)

Name: NF14274_high_4
Description: NF14274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14274_high_4
NF14274_high_4
[»] chr4 (9 HSPs)
chr4 (130-254)||(35259073-35259197)
chr4 (130-240)||(34441993-34442103)
chr4 (3-68)||(17060608-17060672)
chr4 (152-254)||(23391980-23392082)
chr4 (152-254)||(49705201-49705303)
chr4 (167-251)||(48511697-48511781)
chr4 (156-254)||(45621654-45621752)
chr4 (152-255)||(27512057-27512160)
chr4 (161-254)||(15666955-15667048)
[»] chr8 (6 HSPs)
chr8 (132-254)||(9540767-9540894)
chr8 (154-254)||(15255608-15255708)
chr8 (169-254)||(33237414-33237500)
chr8 (152-254)||(4884286-4884388)
chr8 (130-187)||(27115608-27115665)
chr8 (152-188)||(40616922-40616958)
[»] chr3 (10 HSPs)
chr3 (130-254)||(37486331-37486455)
chr3 (180-254)||(25638498-25638573)
chr3 (124-193)||(53329431-53329500)
chr3 (124-193)||(53333109-53333178)
chr3 (124-193)||(53336792-53336861)
chr3 (156-254)||(40291713-40291811)
chr3 (152-254)||(50327357-50327459)
chr3 (156-254)||(50874655-50874753)
chr3 (152-254)||(13843445-13843547)
chr3 (152-224)||(20252594-20252666)
[»] chr2 (4 HSPs)
chr2 (156-253)||(45369258-45369355)
chr2 (131-254)||(24133889-24134012)
chr2 (152-254)||(43178320-43178422)
chr2 (154-254)||(17562844-17562944)
[»] chr5 (3 HSPs)
chr5 (156-254)||(42545134-42545232)
chr5 (152-254)||(31506805-31506907)
chr5 (166-254)||(8466479-8466567)
[»] scaffold0196 (1 HSPs)
scaffold0196 (152-254)||(7905-8007)
[»] chr7 (5 HSPs)
chr7 (130-251)||(11354384-11354505)
chr7 (154-245)||(32027411-32027502)
chr7 (152-254)||(31846502-31846604)
chr7 (152-245)||(46401174-46401267)
chr7 (161-254)||(22628501-22628593)
[»] chr6 (4 HSPs)
chr6 (161-254)||(1800230-1800323)
chr6 (161-254)||(8635322-8635415)
chr6 (166-254)||(29489453-29489541)
chr6 (152-254)||(29396743-29396843)
[»] chr1 (1 HSPs)
chr1 (3-68)||(48224075-48224140)
[»] scaffold0568 (2 HSPs)
scaffold0568 (3-68)||(2583-2648)
scaffold0568 (3-68)||(9185-9250)


Alignment Details
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 130 - 254
Target Start/End: Complemental strand, 35259197 - 35259073
Alignment:
Q  130 gggtgggcaaaattaaccaatgaccgaaccaaaccatatcaaaattaactgaaccatttcacaaattttttatctgaaccattattttgataacagttaa 229  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  35259197 gggtgggcaaaattaaccaataaccgaaccgaaccatatcaaaattaactgaaccatttcacaaatttttgaactgaaccattattttgataacagttaa 35259098  T
Q  230 ttaaccgaaccgaacccttaataac 254  Q
    |||||||||||||||| ||||||||    
T  35259097 ttaaccgaaccgaaccattaataac 35259073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 130 - 240
Target Start/End: Complemental strand, 34442103 - 34441993
Alignment:
Q  130 gggtgggcaaaattaaccaatgaccgaaccaaaccatatcaaaattaactgaaccatttcacaaattttttatctgaaccattattttgataacagttaa 229  Q
    ||||| ||||||||||||||| | |||||| ||||||||||||||||||||||| ||||||| |||||||   |||||||||||||||||||||| ||||    
T  34442103 gggtgagcaaaattaaccaataatcgaaccgaaccatatcaaaattaactgaactatttcactaatttttggactgaaccattattttgataacacttaa 34442004  T
Q  230 ttaaccgaacc 240  Q
    |||||||||||    
T  34442003 ttaaccgaacc 34441993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 17060608 - 17060672
Alignment:
Q  3 tgcctttccagatagtttttgggtctttgtatacctttgcatcagtcacttgctttaggaggctga 68  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  17060608 tgcctttccggatagtttt-gggtctttgtatacctttgcatcagtcacttgttttaggaggctga 17060672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 152 - 254
Target Start/End: Original strand, 23391980 - 23392082
Alignment:
Q  152 accgaaccaaaccatatcaaaattaactgaaccatttcacaaattttttatctgaaccattattttgataacagttaattaaccgaaccgaacccttaat 251  Q
    |||||||| |||| ||||| ||||||||||||||||| || |||| || | | |||||||||||||||||||| || ||||||||||| ||||| ||| |    
T  23391980 accgaaccgaaccgtatcagaattaactgaaccatttaaccaattcttgaaccgaaccattattttgataacaattcattaaccgaactgaaccgttagt 23392079  T
Q  252 aac 254  Q
    |||    
T  23392080 aac 23392082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 152 - 254
Target Start/End: Original strand, 49705201 - 49705303
Alignment:
Q  152 accgaaccaaaccatatcaaaattaactgaaccatttcacaaattttttatctgaaccattattttgataacagttaattaaccgaaccgaacccttaat 251  Q
    |||||||| |||| ||||| ||||||||||||||||| || |||| || | | |||||||||||||||||||| || ||||||||||| ||||| ||| |    
T  49705201 accgaaccgaaccgtatcagaattaactgaaccatttaaccaattcttgaaccgaaccattattttgataacaattcattaaccgaactgaaccgttagt 49705300  T
Q  252 aac 254  Q
    |||    
T  49705301 aac 49705303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 251
Target Start/End: Original strand, 48511697 - 48511781
Alignment:
Q  167 atcaaaattaactgaaccatttcacaaattttttatctgaaccattattttgataacagttaattaaccgaaccgaacccttaat 251  Q
    ||||||||||||||||||||||||  ||||||| | | | ||||||||||||||||| ||| | ||||||||| ||||| |||||    
T  48511697 atcaaaattaactgaaccatttcatcaatttttgaaccgcaccattattttgataacggttcactaaccgaactgaaccgttaat 48511781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 254
Target Start/End: Complemental strand, 45621752 - 45621654
Alignment:
Q  156 aaccaaaccatatcaaaattaactgaaccatttcacaaattttttatctgaaccattattttgataacagttaattaaccgaaccgaacccttaataac 254  Q
    |||| |||||||||||||||||| ||||||||| || |||| |  | | |||||||||||||||||||| || | | ||||||| ||||| ||| ||||    
T  45621752 aaccgaaccatatcaaaattaaccgaaccatttaaccaattctcgaaccgaaccattattttgataacaattcactgaccgaactgaaccgttagtaac 45621654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 255
Target Start/End: Complemental strand, 27512160 - 27512057
Alignment:
Q  152 accgaaccaaaccatatcaaaattaactgaaccatttcacaaattttttatctgaaccattattttgataacagttaattaaccgaaccgaacccttaat 251  Q
    |||||||  ||| ||||||||||||| |||||||||||  || || |  | ||||||||||||||||| | || || | ||||||||| ||||| |||||    
T  27512160 accgaactgaactatatcaaaattaattgaaccatttcgaaagttctcgaactgaaccattattttgacagcaattcactaaccgaactgaacctttaat 27512061  T
Q  252 aact 255  Q
    ||||    
T  27512060 aact 27512057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 254
Target Start/End: Original strand, 15666955 - 15667048
Alignment:
Q  161 aaccatatcaaaattaactgaaccatttcacaaattttttatctgaaccattattttgataacagttaattaaccgaaccgaacccttaataac 254  Q
    |||| |||||||||||| ||||| |||| || ||||||  |   |||| ||||||||||||||| || | ||||||||||||||| ||| ||||    
T  15666955 aaccgtatcaaaattaattgaactatttaaccaattttcgaatcgaactattattttgataacaattcactaaccgaaccgaaccgttagtaac 15667048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 132 - 254
Target Start/End: Complemental strand, 9540894 - 9540767
Alignment:
Q  132 gtgggcaaaattaaccaatgaccgaaccaaa-----ccatatcaaaattaactgaaccatttcacaaattttttatctgaaccattattttgataacagt 226  Q
    ||||||||||||||||||| |||||||| ||     ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  9540894 gtgggcaaaattaaccaataaccgaaccgaatcgaaccatatcaaaattaactgaaccatttcacaaatttttgaactgaaccattattttgataacagt 9540795  T
Q  227 taattaaccgaaccgaacccttaataac 254  Q
    ||||||||||||||||||| ||||||||    
T  9540794 taattaaccgaaccgaaccattaataac 9540767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 154 - 254
Target Start/End: Complemental strand, 15255708 - 15255608
Alignment:
Q  154 cgaaccaaaccatatcaaaattaactgaaccatttcacaaattttttatctgaaccattattttgataacagttaattaaccgaaccgaacccttaataa 253  Q
    |||||| ||| |||||||||||||||||||||||||| |||||||| | |||||||||||||||  ||| |||||||||||| ||||||||| |||||||    
T  15255708 cgaaccgaactatatcaaaattaactgaaccatttcataaatttttgaactgaaccattattttcttaatagttaattaaccaaaccgaaccattaataa 15255609  T
Q  254 c 254  Q
    |    
T  15255608 c 15255608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 254
Target Start/End: Original strand, 33237414 - 33237500
Alignment:
Q  169 caaaattaactgaaccatttcacaaattttttatctgaaccattattttgataacagttaattaacc-gaaccgaacccttaataac 254  Q
    ||||||||||||||||||||||| ||||||| | ||||| ||||||||||||||||||||||||||| |||||||||  ||||||||    
T  33237414 caaaattaactgaaccatttcactaatttttgaactgaatcattattttgataacagttaattaaccagaaccgaactattaataac 33237500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 152 - 254
Target Start/End: Original strand, 4884286 - 4884388
Alignment:
Q  152 accgaaccaaaccatatcaaaattaactgaaccatttcacaaattttttatctgaaccattattttgataacagttaattaaccgaaccgaacccttaat 251  Q
    |||||||| |||| ||||| ||||||||||||||||| || |||| || | | |||||||||||||||||||| || ||||||||||| ||||| ||| |    
T  4884286 accgaaccgaaccgtatcagaattaactgaaccatttaaccaattcttgaaccgaaccattattttgataacaattcattaaccgaactgaaccgttagt 4884385  T
Q  252 aac 254  Q
    |||    
T  4884386 aac 4884388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 27115665 - 27115608
Alignment:
Q  130 gggtgggcaaaattaaccaatgaccgaaccaaaccatatcaaaattaactgaaccatt 187  Q
    ||||||||||||||||||||| ||||||   |||||||||||||||||||||||||||    
T  27115665 gggtgggcaaaattaaccaataaccgaattgaaccatatcaaaattaactgaaccatt 27115608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 40616958 - 40616922
Alignment:
Q  152 accgaaccaaaccatatcaaaattaactgaaccattt 188  Q
    |||||||| |||||||||||||||||||||| |||||    
T  40616958 accgaaccgaaccatatcaaaattaactgaatcattt 40616922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 130 - 254
Target Start/End: Complemental strand, 37486455 - 37486331
Alignment:
Q  130 gggtgggcaaaattaaccaatgaccgaaccaaaccatatcaaaattaactgaaccatttcacaaattttttatctgaaccattattttgataacagttaa 229  Q
    ||||||||||||||||||| | || ||||| ||||||||||||||||||||||||||||||||| ||| | | ||||||||||||||||||| |||||||    
T  37486455 gggtgggcaaaattaaccagtaactgaaccgaaccatatcaaaattaactgaaccatttcacaagtttatgaactgaaccattattttgatagcagttaa 37486356  T
Q  230 ttaaccgaaccgaacccttaataac 254  Q
    |||||||||||||||| ||||||||    
T  37486355 ttaaccgaaccgaaccattaataac 37486331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 254
Target Start/End: Original strand, 25638498 - 25638573
Alignment:
Q  180 gaaccatttcacaaatttttt-atctgaaccattattttgataacagttaattaaccgaaccgaacccttaataac 254  Q
    |||| |||||||||| ||||| | ||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  25638498 gaacaatttcacaaaatttttgaactgaaccattatttttataacagttaattaaccgaaccgaaccattaataac 25638573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 124 - 193
Target Start/End: Complemental strand, 53329500 - 53329431
Alignment:
Q  124 gtgtaagggtgggcaaaattaaccaatgaccgaaccaaaccatatcaaaattaactgaaccatttcacaa 193  Q
    ||||| ||||||||||||||||||| | |||||| | ||||||||||||||||||| |||||||||||||    
T  53329500 gtgtaggggtgggcaaaattaaccagtaaccgaatcgaaccatatcaaaattaactaaaccatttcacaa 53329431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 124 - 193
Target Start/End: Complemental strand, 53333178 - 53333109
Alignment:
Q  124 gtgtaagggtgggcaaaattaaccaatgaccgaaccaaaccatatcaaaattaactgaaccatttcacaa 193  Q
    ||||| ||||||||||||||||||| | |||||| | ||||||||||||||||||| |||||||||||||    
T  53333178 gtgtaggggtgggcaaaattaaccagtaaccgaatcgaaccatatcaaaattaactaaaccatttcacaa 53333109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 124 - 193
Target Start/End: Complemental strand, 53336861 - 53336792
Alignment:
Q  124 gtgtaagggtgggcaaaattaaccaatgaccgaaccaaaccatatcaaaattaactgaaccatttcacaa 193  Q
    ||||| ||||||||||||||||||| | |||||| | ||||||||||||||||||| |||||||||||||    
T  53336861 gtgtaggggtgggcaaaattaaccagtaaccgaatcgaaccatatcaaaattaactaaaccatttcacaa 53336792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 254
Target Start/End: Original strand, 40291713 - 40291811
Alignment:
Q  156 aaccaaaccatatcaaaattaactgaaccatttcacaaattttttatctgaaccattattttgataacagttaattaaccgaaccgaacccttaataac 254  Q
    |||| |||| ||||| ||||||||||||||||| || |||| || | | |||||||||||||||||||| || ||||||||||| ||||| ||| ||||    
T  40291713 aaccgaaccgtatcagaattaactgaaccatttaaccaattcttgaaccgaaccattattttgataacaattcattaaccgaactgaaccgttagtaac 40291811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 254
Target Start/End: Original strand, 50327357 - 50327459
Alignment:
Q  152 accgaaccaaaccatatcaaaattaactgaaccatttcacaaattttttatctgaaccattattttgataacagttaattaaccgaaccgaacccttaat 251  Q
    |||||||| |||| |||||||||||| |||||||||| || |||| |  | | |||||||||||||||||||| || | ||||||||| ||||| ||| |    
T  50327357 accgaaccgaaccgtatcaaaattaattgaaccatttaaccaattctcgaaccgaaccattattttgataacaattcactaaccgaactgaaccgttagt 50327456  T
Q  252 aac 254  Q
    |||    
T  50327457 aac 50327459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 254
Target Start/End: Original strand, 50874655 - 50874753
Alignment:
Q  156 aaccaaaccatatcaaaattaactgaaccatttcacaaattttttatctgaaccattattttgataacagttaattaaccgaaccgaacccttaataac 254  Q
    |||| |||| ||||||||||||||||||||||| |||||||||  | |  ||||||||||||||||||| || | |||| |||| ||||| ||| ||||    
T  50874655 aaccgaaccgtatcaaaattaactgaaccatttaacaaattttcgaaccaaaccattattttgataacaattcactaacggaactgaaccgttagtaac 50874753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 254
Target Start/End: Complemental strand, 13843547 - 13843445
Alignment:
Q  152 accgaaccaaaccatatcaaaattaactgaaccatttcacaaattttttatctgaaccattattttgataacagttaattaaccgaaccgaacccttaat 251  Q
    |||||||  |||||||||||||||||||||||||||| || | || |  | | |||||||||||| ||||||| || | ||||||||| ||||| ||| |    
T  13843547 accgaactgaaccatatcaaaattaactgaaccatttaaccatttctcgaaccgaaccattatttggataacaattcactaaccgaactgaaccgttagt 13843448  T
Q  252 aac 254  Q
    |||    
T  13843447 aac 13843445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 20252594 - 20252666
Alignment:
Q  152 accgaaccaaaccatatcaaaattaactgaaccatttcacaaattttttatctgaaccattattttgataaca 224  Q
    |||||||| ||||||||||||||||||||||| |||| || |||| |  | | |||| |||||||||||||||    
T  20252594 accgaaccgaaccatatcaaaattaactgaacaatttaaccaattctcgaaccgaacaattattttgataaca 20252666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 9e-39; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 156 - 253
Target Start/End: Complemental strand, 45369355 - 45369258
Alignment:
Q  156 aaccaaaccatatcaaaattaactgaaccatttcacaaattttttatctgaaccattattttgataacagttaattaaccgaaccgaacccttaataa 253  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  45369355 aaccaaaccatatcaaaattaactgaaccatttcacaaatttttgaactgaaccattattttgataacagttaattaaccgaaccgaactattaataa 45369258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 131 - 254
Target Start/End: Complemental strand, 24134012 - 24133889
Alignment:
Q  131 ggtgggcaaaattaaccaatgaccgaaccaaaccatatcaaaattaactgaaccatttcacaaattttttatctgaaccattattttgataacagttaat 230  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||   ||||||  ||||||    
T  24134012 ggtgggcaaaattaaccaataaccgaaccgaaccatatcaaaattaactgaaccatttcacaaatttttgaactgaaccattacaatgataatggttaat 24133913  T
Q  231 taaccgaaccgaacccttaataac 254  Q
    ||||| ||| ||||| ||||||||    
T  24133912 taaccaaacagaaccattaataac 24133889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 152 - 254
Target Start/End: Complemental strand, 43178422 - 43178320
Alignment:
Q  152 accgaaccaaaccatatcaaaattaactgaaccatttcacaaattttttatctgaaccattattttgataacagttaattaaccgaaccgaacccttaat 251  Q
    |||||||| |||| ||||| ||||||||||||||||| || |||| || | | |||||||||||||||||||| || ||||||||||| ||||| ||| |    
T  43178422 accgaaccgaaccgtatcagaattaactgaaccatttaaccaattcttgaaccgaaccattattttgataacaattcattaaccgaactgaaccgttagt 43178323  T
Q  252 aac 254  Q
    |||    
T  43178322 aac 43178320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 254
Target Start/End: Original strand, 17562844 - 17562944
Alignment:
Q  154 cgaaccaaaccatatcaaaattaactgaaccatttcacaaattttttatctgaaccattattttgataacagttaattaaccgaaccgaacccttaataa 253  Q
    |||||| |||| ||||||||||||||||||||||| || |||| |  | | |||||||||||||||||||| || | ||||||||| ||||| ||| |||    
T  17562844 cgaaccgaaccgtatcaaaattaactgaaccatttaaccaattctcgaaccgaaccattattttgataacaattcactaaccgaactgaaccgttagtaa 17562943  T
Q  254 c 254  Q
    |    
T  17562944 c 17562944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 156 - 254
Target Start/End: Original strand, 42545134 - 42545232
Alignment:
Q  156 aaccaaaccatatcaaaattaactgaaccatttcacaaattttttatctgaaccattattttgataacagttaattaaccgaaccgaacccttaataac 254  Q
    |||| |||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42545134 aaccgaaccatatcaaaattaactgaaccatttcacagatttttgaactgaaccattattttgataacagttaattaaccgaaccgaaccattaataac 42545232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 254
Target Start/End: Original strand, 31506805 - 31506907
Alignment:
Q  152 accgaaccaaaccatatcaaaattaactgaaccatttcacaaattttttatctgaaccattattttgataacagttaattaaccgaaccgaacccttaat 251  Q
    |||||||| |||| ||||||||||||||||||||||| || |||| |  | | ||||||||||||||| ||||||| | ||||||||| ||||| ||| |    
T  31506805 accgaaccgaaccgtatcaaaattaactgaaccatttaaccaattctcgaaccgaaccattattttgaaaacagttcactaaccgaactgaaccattagt 31506904  T
Q  252 aac 254  Q
    |||    
T  31506905 aac 31506907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 254
Target Start/End: Complemental strand, 8466567 - 8466479
Alignment:
Q  166 tatcaaaattaactgaaccatttcacaaattttttatctgaaccattattttgataacagttaattaaccgaaccgaacccttaataac 254  Q
    ||||||||||||||| ||||||| || |||| || |   ||||||||||||| ||||||||| | ||||||||| ||||| ||| ||||    
T  8466567 tatcaaaattaactggaccatttaaccaattcttgaatcgaaccattattttaataacagttcactaaccgaactgaaccgttagtaac 8466479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 152 - 254
Target Start/End: Complemental strand, 8007 - 7905
Alignment:
Q  152 accgaaccaaaccatatcaaaattaactgaaccatttcacaaattttttatctgaaccattattttgataacagttaattaaccgaaccgaacccttaat 251  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| | | |||||| |||||||||||||||||||||||||||||||||| | |||||    
T  8007 accgaaccgaaccatatcaaaattaactgaaccatttcacaaatttatgaactgaactattattttgataacagttaattaaccgaaccgaagcattaat 7908  T
Q  252 aac 254  Q
    |||    
T  7907 aac 7905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 130 - 251
Target Start/End: Complemental strand, 11354505 - 11354384
Alignment:
Q  130 gggtgggcaaaattaaccaatgaccgaaccaaaccatatcaaaattaactgaaccatttcacaaattttttatctgaaccattattttgataacagttaa 229  Q
    |||||| |||||||||||||| | |||||| ||||||||| ||||||||||||||||||||||||||||| |  || ||||||||||||| |||||||||    
T  11354505 gggtggacaaaattaaccaataatcgaaccgaaccatatctaaattaactgaaccatttcacaaatttttgagttggaccattattttgacaacagttaa 11354406  T
Q  230 ttaaccgaaccgaacccttaat 251  Q
    |||||||||| ||||| |||||    
T  11354405 ttaaccgaacagaaccattaat 11354384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 32027411 - 32027502
Alignment:
Q  154 cgaaccaaaccatatcaaaattaactgaaccatttcacaaattttttatctgaaccattattttgataacagttaattaaccgaaccgaacc 245  Q
    |||||| ||||||||||||||||||||||| ||||||| ||||||| | ||||||||||||  |||||||||||||||||||||||||||||    
T  32027411 cgaaccgaaccatatcaaaattaactgaacaatttcacgaatttttgaactgaaccattataatgataacagttaattaaccgaaccgaacc 32027502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 254
Target Start/End: Complemental strand, 31846604 - 31846502
Alignment:
Q  152 accgaaccaaaccatatcaaaattaactgaaccatttcacaaattttttatctgaaccattattttgataacagttaattaaccgaaccgaacccttaat 251  Q
    |||||||| |||||||||||||||||||||||||||| || |||| |  | |  ||||||||||||||||||| || | ||||||||| ||||| ||| |    
T  31846604 accgaaccgaaccatatcaaaattaactgaaccatttaaccaattctcgaacgaaaccattattttgataacaattcactaaccgaactgaaccgttagt 31846505  T
Q  252 aac 254  Q
    |||    
T  31846504 aac 31846502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 152 - 245
Target Start/End: Complemental strand, 46401267 - 46401174
Alignment:
Q  152 accgaaccaaaccatatcaaaattaactgaaccatttcacaaattttttatctgaaccattattttgataacagttaattaaccgaaccgaacc 245  Q
    |||||||| |||||||||||||||||||||||||||| || ||||    | | |||||||||||||||||||| || | || ||||||||||||    
T  46401267 accgaaccgaaccatatcaaaattaactgaaccatttaaccaattcccgaaccgaaccattattttgataacaattcactatccgaaccgaacc 46401174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 254
Target Start/End: Complemental strand, 22628593 - 22628501
Alignment:
Q  161 aaccatatcaaaattaactgaaccatttcacaaattttttatctgaaccattattttgataacagttaattaaccgaaccgaacccttaataac 254  Q
    |||| ||||||||||||  |||| |||||| |||||||  ||| |||||||||||||||||||| || | |||| |||| ||||  ||||||||    
T  22628593 aaccgtatcaaaattaatcgaacgatttcataaattttg-atccgaaccattattttgataacaattcactaactgaactgaactgttaataac 22628501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 161 - 254
Target Start/End: Original strand, 1800230 - 1800323
Alignment:
Q  161 aaccatatcaaaattaactgaaccatttcacaaattttttatctgaaccattattttgataacagttaattaaccgaaccgaacccttaataac 254  Q
    ||||||||||||||||||||||||||||||  ||||||| | ||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  1800230 aaccatatcaaaattaactgaaccatttcagtaatttttgaactgaaccattattttaataacagttaattaaccgaaccgaaccattaataac 1800323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 161 - 254
Target Start/End: Original strand, 8635322 - 8635415
Alignment:
Q  161 aaccatatcaaaattaactgaaccatttcacaaattttttatctgaaccattattttgataacagttaattaaccgaaccgaacccttaataac 254  Q
    ||||||||||||||||||| |||||||||||| |||||| | ||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  8635322 aaccatatcaaaattaactaaaccatttcacagatttttgaactgaaccattattttgataacagttaattaatcgaaccgaaccattaataac 8635415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 254
Target Start/End: Complemental strand, 29489541 - 29489453
Alignment:
Q  166 tatcaaaattaactgaaccatttcacaaattttttatctgaaccattattttgataacagttaattaaccgaaccgaacccttaataac 254  Q
    |||||||||||| ||||||||||||| |||| |  | | |||||||||||||||||||| || | ||||| ||| ||||| ||||||||    
T  29489541 tatcaaaattaattgaaccatttcactaattctcgaaccgaaccattattttgataacaattcactaaccaaactgaaccattaataac 29489453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 254
Target Start/End: Original strand, 29396743 - 29396843
Alignment:
Q  152 accgaaccaaaccatatcaaaattaactgaaccatttcacaaattttttatctgaaccattattttgataacagttaattaaccgaaccgaacccttaat 251  Q
    |||||||| |||| ||||||||||||||||| ||||| || |||| |  | | ||||||| |||||||||||| |||   |||||||||||||| ||| |    
T  29396743 accgaaccgaaccgtatcaaaattaactgaaacatttaaccaattctcaaaccgaaccataattttgataacaatta--caaccgaaccgaaccgttagt 29396840  T
Q  252 aac 254  Q
    |||    
T  29396841 aac 29396843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 48224075 - 48224140
Alignment:
Q  3 tgcctttccagatagtttttgggtctttgtatacctttgcatcagtcacttgctttaggaggctga 68  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48224075 tgcctttccggatagtttttgggtctttgtatacctttgcatcagtcacttgctttaggaggctga 48224140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0568 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0568
Description:

Target: scaffold0568; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 2583 - 2648
Alignment:
Q  3 tgcctttccagatagtttttgggtctttgtatacctttgcatcagtcacttgctttaggaggctga 68  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2583 tgcctttccggatagtttttgggtctttgtatacctttgcatcagtcacttgttttaggaggctga 2648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0568; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 9185 - 9250
Alignment:
Q  3 tgcctttccagatagtttttgggtctttgtatacctttgcatcagtcacttgctttaggaggctga 68  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9185 tgcctttccggatagtttttgggtctttgtatacctttgcatcagtcacttgttttaggaggctga 9250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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