View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14274_low_5 (Length: 225)

Name: NF14274_low_5
Description: NF14274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14274_low_5
NF14274_low_5
[»] chr6 (49 HSPs)
chr6 (1-209)||(27603591-27603799)
chr6 (2-204)||(26803534-26803736)
chr6 (54-209)||(28787378-28787533)
chr6 (54-209)||(28793499-28793654)
chr6 (2-204)||(26824907-26825109)
chr6 (1-209)||(26647566-26647774)
chr6 (1-209)||(26753534-26753742)
chr6 (1-203)||(27336988-27337190)
chr6 (1-203)||(27397728-27397930)
chr6 (33-209)||(26624390-26624566)
chr6 (33-209)||(26730367-26730543)
chr6 (1-209)||(27680037-27680245)
chr6 (39-203)||(27705147-27705311)
chr6 (33-209)||(31285678-31285854)
chr6 (1-203)||(27717392-27717594)
chr6 (32-204)||(27591913-27592085)
chr6 (54-204)||(26657105-26657252)
chr6 (54-204)||(26763076-26763223)
chr6 (1-203)||(27426505-27426707)
chr6 (41-203)||(27610013-27610175)
chr6 (55-204)||(27676512-27676661)
chr6 (58-209)||(26885214-26885362)
chr6 (20-203)||(27697479-27697662)
chr6 (55-204)||(26862721-26862870)
chr6 (55-167)||(25580863-25580975)
chr6 (55-167)||(26144009-26144121)
chr6 (55-167)||(25484200-25484312)
chr6 (126-209)||(26636858-26636941)
chr6 (126-209)||(26742824-26742907)
chr6 (126-209)||(26849924-26850007)
chr6 (126-209)||(26960337-26960420)
chr6 (126-209)||(27664101-27664184)
chr6 (3-173)||(25492242-25492412)
chr6 (58-203)||(28326622-28326767)
chr6 (58-203)||(28504258-28504403)
chr6 (55-167)||(25539684-25539796)
chr6 (126-203)||(26950955-26951032)
chr6 (58-203)||(28186538-28186683)
chr6 (126-200)||(25075079-25075153)
chr6 (33-167)||(26057041-26057175)
chr6 (33-167)||(26077011-26077145)
chr6 (58-203)||(28296633-28296778)
chr6 (58-203)||(28515295-28515440)
chr6 (33-167)||(27530233-27530364)
chr6 (33-167)||(25512010-25512144)
chr6 (145-204)||(26812759-26812818)
chr6 (146-209)||(26978612-26978675)
chr6 (169-203)||(28182373-28182407)
chr6 (126-202)||(28140747-28140823)
[»] chr8 (1 HSPs)
chr8 (39-209)||(29272725-29272895)
[»] scaffold0277 (2 HSPs)
scaffold0277 (54-209)||(3599-3754)
scaffold0277 (56-209)||(12562-12715)
[»] scaffold0419 (1 HSPs)
scaffold0419 (56-209)||(8629-8782)
[»] chr1 (4 HSPs)
chr1 (1-209)||(28126562-28126770)
chr1 (1-174)||(28163298-28163471)
chr1 (2-209)||(267227-267434)
chr1 (59-202)||(26137033-26137176)
[»] scaffold0349 (1 HSPs)
scaffold0349 (1-203)||(2432-2634)
[»] chr4 (7 HSPs)
chr4 (62-204)||(18654365-18654507)
chr4 (62-204)||(18722973-18723115)
chr4 (1-203)||(18074848-18075050)
chr4 (62-204)||(18698288-18698430)
chr4 (62-204)||(18730392-18730534)
chr4 (62-203)||(18678449-18678590)
chr4 (62-204)||(18688514-18688656)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-203)||(60656-60858)
[»] scaffold1870 (1 HSPs)
scaffold1870 (146-209)||(1-64)
[»] scaffold0019 (1 HSPs)
scaffold0019 (58-203)||(57187-57332)
[»] chr2 (1 HSPs)
chr2 (126-202)||(17992109-17992185)


Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 49)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 27603799 - 27603591
Alignment:
Q  1 cttactaaccagtcatgatatagaaagaaagtatgcattagaagggttgtgtaggacagaagctcttgaattgttgaggtggatggcttttaagaataac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27603799 cttactaaccagtcatgatatagaaagaaagtatgcattagaagggttgtgtaggacagaagctcttgaattgttgaggtggatggcttttaagaataac 27603700  T
Q  101 aaagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttcgggacttcccttagttttagaagtagtgtgttccaacttgtttggaa 200  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||    
T  27603699 aaagtaccttcagtttatgaagacgttttaaaccgtgcagtttcatatgcttcaggacttcccttagttttggaagtagtgggttccaacttgtttggaa 27603600  T
Q  201 agaggatag 209  Q
    |||||||||    
T  27603599 agaggatag 27603591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 2 - 204
Target Start/End: Original strand, 26803534 - 26803736
Alignment:
Q  2 ttactaaccagtcatgatatagaaagaaagtatgcattagaagggttgtgtaggacagaagctcttgaattgttgaggtggatggcttttaagaataaca 101  Q
    ||||| ||||||||||||||||||||||  |||||| |||| ||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||    
T  26803534 ttactgaccagtcatgatatagaaagaacatatgcagtagaggggttgtatgggacagaagctcttgaattgttgaggtggatggcttttaaaaataaca 26803633  T
Q  102 aagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttcgggacttcccttagttttagaagtagtgtgttccaacttgtttggaaa 201  Q
    |||||||||||| |||||||||  ||||||| |||||||||||||||||||| || |||||||||||||||||  ||||| |||||||||||||||||||    
T  26803634 aagtaccttcaagttatgaagacattttaaatcgtgcagtttcatatgcttcaggtcttcccttagttttagagatagtgggttccaacttgtttggaaa 26803733  T
Q  202 gag 204  Q
    |||    
T  26803734 gag 26803736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 54 - 209
Target Start/End: Original strand, 28787378 - 28787533
Alignment:
Q  54 ggacagaagctcttgaattgttgaggtggatggcttttaagaataacaaagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttc 153  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||| ||||||||    
T  28787378 ggacagaagctcttgagttgttgagatggatggcttttaagaataacaaagtaccttcaagttatgaagacgttttaaatcgtgcagtttcttatgcttc 28787477  T
Q  154 gggacttcccttagttttagaagtagtgtgttccaacttgtttggaaagaggatag 209  Q
    ||| |||||||||||||||||| ||||| ||||||||||||||||||||| |||||    
T  28787478 gggccttcccttagttttagaaatagtgggttccaacttgtttggaaagacgatag 28787533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 54 - 209
Target Start/End: Original strand, 28793499 - 28793654
Alignment:
Q  54 ggacagaagctcttgaattgttgaggtggatggcttttaagaataacaaagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttc 153  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||| ||||||||    
T  28793499 ggacagaagctcttgagttgttgagatggatggcttttaagaataacaaagtaccttcaagttatgaagacgttttaaatcgtgcagtttcgtatgcttc 28793598  T
Q  154 gggacttcccttagttttagaagtagtgtgttccaacttgtttggaaagaggatag 209  Q
    ||| |||||||||||||||||| ||||| ||||||||||||||||||||| |||||    
T  28793599 gggccttcccttagttttagaaatagtgggttccaacttgtttggaaagacgatag 28793654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 2 - 204
Target Start/End: Original strand, 26824907 - 26825109
Alignment:
Q  2 ttactaaccagtcatgatatagaaagaaagtatgcattagaagggttgtgtaggacagaagctcttgaattgttgaggtggatggcttttaagaataaca 101  Q
    ||||| |||| |||||| ||||||  || ||||| | |||||||||||| | |||||||||||||||||||||| ||||||||||||||||| |||||||    
T  26824907 ttacttaccaatcatgagatagaattaatgtatgaagtagaagggttgtatgggacagaagctcttgaattgttaaggtggatggcttttaaaaataaca 26825006  T
Q  102 aagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttcgggacttcccttagttttagaagtagtgtgttccaacttgtttggaaa 201  Q
    ||||||| |||| ||||||| |  ||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||| ||||||| |||||||||||    
T  26825007 aagtaccgtcaagttatgaacacattttaaaccgtgcagtttcatatgcttcgggccttcccttagtattagaaatagtgggttccaatttgtttggaaa 26825106  T
Q  202 gag 204  Q
    |||    
T  26825107 gag 26825109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 26647566 - 26647774
Alignment:
Q  1 cttactaaccagtcatgatatagaaagaaagtatgcattagaagggttgtgtaggacagaagctcttgaattgttgaggtggatggcttttaagaataac 100  Q
    |||||||||| ||||||  ||||||||||  |||||| ||  |||| | | | |||||||||||||||||||||||||||||||||| ||||||||||||    
T  26647566 cttactaacctgtcatgggatagaaagaacatatgcagtaagagggctatatgggacagaagctcttgaattgttgaggtggatggcgtttaagaataac 26647665  T
Q  101 aaagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttcgggacttcccttagttttagaagtagtgtgttccaacttgtttggaa 200  Q
    ||||||||  ||| ||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||| ||||| |||||||||| | |||||    
T  26647666 aaagtaccgccaagttatgaagacgttttaaaccgtgcagtttcatatgcttcaggccttcccttagttttagaaatagtgggttccaacttatatggaa 26647765  T
Q  201 agaggatag 209  Q
    |||| ||||    
T  26647766 agagcatag 26647774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 26753534 - 26753742
Alignment:
Q  1 cttactaaccagtcatgatatagaaagaaagtatgcattagaagggttgtgtaggacagaagctcttgaattgttgaggtggatggcttttaagaataac 100  Q
    |||||||||| ||||||  ||||||||||  |||||| ||  |||| | | | |||||||||||||||||||||||||||||||||| ||||||||||||    
T  26753534 cttactaacctgtcatgggatagaaagaacatatgcagtaagagggctatatgggacagaagctcttgaattgttgaggtggatggcgtttaagaataac 26753633  T
Q  101 aaagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttcgggacttcccttagttttagaagtagtgtgttccaacttgtttggaa 200  Q
    ||||||||  ||| ||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||| ||||| |||||||||| | |||||    
T  26753634 aaagtaccgccaagttatgaagacgttttaaaccgtgcagtttcatatgcttcaggccttcccttagttttagaaatagtgggttccaacttatatggaa 26753733  T
Q  201 agaggatag 209  Q
    |||| ||||    
T  26753734 agagcatag 26753742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 27337190 - 27336988
Alignment:
Q  1 cttactaaccagtcatgatatagaaagaaagtatgcattagaagggttgtgtaggacagaagctcttgaattgttgaggtggatggcttttaagaataac 100  Q
    |||||||||| ||||||  ||||||||||  |||||| ||  |||| | | | |||  ||||||||||||||||||||||||| ||||||||||||||||    
T  27337190 cttactaacctgtcatgggatagaaagaacatatgcagtaagagggctatatgggaaggaagctcttgaattgttgaggtggacggcttttaagaataac 27337091  T
Q  101 aaagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttcgggacttcccttagttttagaagtagtgtgttccaacttgtttggaa 200  Q
    ||||||||  ||| ||||||||| ||||||||||||||||||||||||| ||||||  ||||||||||||||||| ||||| |||| |||||||||||||    
T  27337090 aaagtaccgccaagttatgaagatgttttaaaccgtgcagtttcatatggttcgggcattcccttagttttagaaatagtgggttctaacttgtttggaa 27336991  T
Q  201 aga 203  Q
    |||    
T  27336990 aga 27336988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 27397930 - 27397728
Alignment:
Q  1 cttactaaccagtcatgatatagaaagaaagtatgcattagaagggttgtgtaggacagaagctcttgaattgttgaggtggatggcttttaagaataac 100  Q
    |||||||||| ||||||  ||||||||||  |||||| ||  |||| | | | |||  ||||||||||||||||||||||||| ||||||||||||||||    
T  27397930 cttactaacctgtcatgggatagaaagaacatatgcagtaagagggctatatgggaaggaagctcttgaattgttgaggtggacggcttttaagaataac 27397831  T
Q  101 aaagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttcgggacttcccttagttttagaagtagtgtgttccaacttgtttggaa 200  Q
    ||||||||  ||| ||||||||| ||||||||||||||||||||||||| ||||||  ||||||||||||||||| ||||| |||| |||||||||||||    
T  27397830 aaagtaccgccaagttatgaagatgttttaaaccgtgcagtttcatatggttcgggcattcccttagttttagaaatagtgggttctaacttgtttggaa 27397731  T
Q  201 aga 203  Q
    |||    
T  27397730 aga 27397728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 33 - 209
Target Start/End: Original strand, 26624390 - 26624566
Alignment:
Q  33 atgcattagaagggttgtgtaggacagaagctcttgaattgttgaggtggatggcttttaagaataacaaagtaccttcaatttatgaagaagttttaaa 132  Q
    ||||| |||||||||||| | ||||||| | || ||||||||||||||||||||||||||| | | ||||||| ||||||  |||||||||  |||||||    
T  26624390 atgcagtagaagggttgtatgggacagacggtcatgaattgttgaggtggatggcttttaaaagtgacaaagttccttcaggttatgaagacattttaaa 26624489  T
Q  133 ccgtgcagtttcatatgcttcgggacttcccttagttttagaagtagtgtgttccaacttgtttggaaagaggatag 209  Q
    |||||||||| |||||||||| || ||||| |||||||||||| | ||| |||||||||||||||||||||| ||||    
T  26624490 ccgtgcagttgcatatgcttctggccttccgttagttttagaaattgtgggttccaacttgtttggaaagagcatag 26624566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 33 - 209
Target Start/End: Original strand, 26730367 - 26730543
Alignment:
Q  33 atgcattagaagggttgtgtaggacagaagctcttgaattgttgaggtggatggcttttaagaataacaaagtaccttcaatttatgaagaagttttaaa 132  Q
    ||||| |||||||||||| | ||||||| | || ||||||||||||||||||||||||||| | | ||||||| ||||||  |||||||||  |||||||    
T  26730367 atgcagtagaagggttgtatgggacagacggtcatgaattgttgaggtggatggcttttaaaagtgacaaagttccttcaggttatgaagacattttaaa 26730466  T
Q  133 ccgtgcagtttcatatgcttcgggacttcccttagttttagaagtagtgtgttccaacttgtttggaaagaggatag 209  Q
    |||||||||| |||||||||| || ||||| |||||||||||| | ||| |||||||||||||||||||||| ||||    
T  26730467 ccgtgcagttgcatatgcttctggccttccgttagttttagaaattgtgggttccaacttgtttggaaagagcatag 26730543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 27680037 - 27680245
Alignment:
Q  1 cttactaaccagtcatgatatagaaagaaagtatgcattagaagggttgtgtaggacagaagctcttgaattgttgaggtggatggcttttaagaataac 100  Q
    |||||||| ||||||||  |||||||| |   ||||| |||||||||||  |  ||||||||||||||||||||||||||||||||||||||| | | |     
T  27680037 cttactaagcagtcatggcatagaaagtacacatgcagtagaagggttgaatgagacagaagctcttgaattgttgaggtggatggcttttaaaagtgat 27680136  T
Q  101 aaagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttcgggacttcccttagttttagaagtagtgtgttccaacttgtttggaa 200  Q
    ||||| ||||||  ||| |||||  ||||||||||||||||| |||||||||  || ||||| |||||||||||||||||| |||| |||||||||||||    
T  27680137 aaagttccttcaggttacgaagacattttaaaccgtgcagttgcatatgcttttggccttccgttagttttagaagtagtgggttctaacttgtttggaa 27680236  T
Q  201 agaggatag 209  Q
    |||| ||||    
T  27680237 agagcatag 27680245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 39 - 203
Target Start/End: Complemental strand, 27705311 - 27705147
Alignment:
Q  39 tagaagggttgtgtaggacagaagctcttgaattgttgaggtggatggcttttaagaataacaaagtaccttcaatttatgaagaagttttaaaccgtgc 138  Q
    |||||||||||  | ||| ||| |||||||||||||||||||||||||||||||| ||| |||| || ||||||  |||||||||  |||||||||||||    
T  27705311 tagaagggttgaatgggatagatgctcttgaattgttgaggtggatggcttttaaaaatgacaacgttccttcaggttatgaagacattttaaaccgtgc 27705212  T
Q  139 agtttcatatgcttcgggacttcccttagttttagaagtagtgtgttccaacttgtttggaaaga 203  Q
    |||| |||||||||| || ||||| ||||||||||||||| || |||| ||||||||||| ||||    
T  27705211 agttgcatatgcttctggccttccgttagttttagaagtaatgggttctaacttgtttggcaaga 27705147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 33 - 209
Target Start/End: Original strand, 31285678 - 31285854
Alignment:
Q  33 atgcattagaagggttgtgtaggacagaagctcttgaattgttgaggtggatggcttttaagaataacaaagtaccttcaatttatgaagaagttttaaa 132  Q
    ||||| |||||||||||  | |||| ||||||||||||||||| ||||||||||||||||| | | ||||||| ||||||  ||| |||||  |||||||    
T  31285678 atgcagtagaagggttgaatgggactgaagctcttgaattgttaaggtggatggcttttaaaagtgacaaagttccttcaggttacgaagacattttaaa 31285777  T
Q  133 ccgtgcagtttcatatgcttcgggacttcccttagttttagaagtagtgtgttccaacttgtttggaaagaggatag 209  Q
    |||||||||| ||||| |||| || ||||| |||||| ||||||||||| |||| ||||||||||||||||| ||||    
T  31285778 ccgtgcagttgcatattcttctggccttccattagttatagaagtagtgggttcaaacttgtttggaaagagcatag 31285854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 27717594 - 27717392
Alignment:
Q  1 cttactaaccagtcatgatatagaaagaaagtatgcattagaagggttgtgtaggacagaagctcttgaattgttgaggtggatggcttttaagaataac 100  Q
    |||||||||| ||||||  ||| |||| | | ||| | |||||||||||| | |||||||||||||||||||||||||||||||||||||||| | | ||    
T  27717594 cttactaacctgtcatgggataaaaagtatgcatgaagtagaagggttgtatgggacagaagctcttgaattgttgaggtggatggcttttaaaagtgac 27717495  T
Q  101 aaagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttcgggacttcccttagttttagaagtagtgtgttccaacttgtttggaa 200  Q
    || || ||||||  ||| |||||  ||||||||||||||||| |||||||||| || ||||| |||||| ||||| ||||| |||| ||||| | |||||    
T  27717494 aatgttccttcaggttacgaagagattttaaaccgtgcagttgcatatgcttctggccttccgttagttatagaaatagtgggttctaacttatctggaa 27717395  T
Q  201 aga 203  Q
    |||    
T  27717394 aga 27717392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 32 - 204
Target Start/End: Complemental strand, 27592085 - 27591913
Alignment:
Q  32 tatgcattagaagggttgtgtaggacagaagctcttgaattgttgaggtggatggcttttaagaataacaaagtaccttcaatttatgaagaagttttaa 131  Q
    |||||| |||||| ||||  | |||||||||||||||||||||||||||||| ||||||||| ||| | ||||| ||||||| |||||||||  ||||||    
T  27592085 tatgcagtagaagagttgaatgggacagaagctcttgaattgttgaggtggaaggcttttaaaaatgagaaagttccttcaagttatgaagacattttaa 27591986  T
Q  132 accgtgcagtttcatatgcttcgggacttcccttagttttagaagtagtgtgttccaacttgtttggaaagag 204  Q
    | |||||||||  ||||||||| || ||||| ||||   ||||||||||| |||| |||||||||||||||||    
T  27591985 agcgtgcagttgtatatgcttctggccttccattagcgatagaagtagtgggttctaacttgtttggaaagag 27591913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 54 - 204
Target Start/End: Original strand, 26657105 - 26657252
Alignment:
Q  54 ggacagaagctcttgaattgttgaggtggatggcttttaagaataacaaagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttc 153  Q
    |||||||||| |||||||||||||| ||||||||||||| ||   |||| || ||||||  |||||||||| |||||| |||||||||||||||||||||    
T  26657105 ggacagaagcacttgaattgttgagatggatggctttta-gag--acaatgttccttcaggttatgaagaaattttaagccgtgcagtttcatatgcttc 26657201  T
Q  154 gggacttcccttagttttagaagtagtgtgttccaacttgtttggaaagag 204  Q
     ||||||||||||||| |||||||||||  ||| |||||||||||||||||    
T  26657202 aggacttcccttagttatagaagtagtggcttcaaacttgtttggaaagag 26657252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 54 - 204
Target Start/End: Original strand, 26763076 - 26763223
Alignment:
Q  54 ggacagaagctcttgaattgttgaggtggatggcttttaagaataacaaagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttc 153  Q
    |||||||||| |||||||||||||| ||||||||||||| ||   |||| || ||||||  |||||||||| |||||| |||||||||||||||||||||    
T  26763076 ggacagaagcacttgaattgttgagatggatggctttta-gag--acaatgttccttcaggttatgaagaaattttaagccgtgcagtttcatatgcttc 26763172  T
Q  154 gggacttcccttagttttagaagtagtgtgttccaacttgtttggaaagag 204  Q
     ||||||||||||||| |||||||||||  ||| |||||||||||||||||    
T  26763173 aggacttcccttagttatagaagtagtggcttcaaacttgtttggaaagag 26763223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 27426707 - 27426505
Alignment:
Q  1 cttactaaccagtcatgatatagaaagaaagtatgcattagaagggttgtgtaggacagaagctcttgaattgttgaggtggatggcttttaagaataac 100  Q
    ||||||| || ||||||| ||||||| ||  |||||| || ||||||||  |  ||||||||||||||||||||||||||||||||||||||| ||| ||    
T  27426707 cttactagcctgtcatgagatagaaaaaacatatgcagtaaaagggttgaatgtgacagaagctcttgaattgttgaggtggatggcttttaaaaatgac 27426608  T
Q  101 aaagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttcgggacttcccttagttttagaagtagtgtgttccaacttgtttggaa 200  Q
    ||||| ||||||| ||||||| |  |||| || |||| |||| | |||||||| || |||||  ||||| ||||| ||||| |||| |||||||||||||    
T  27426607 aaagttccttcaagttatgaaaagattttgaatcgtgtagttgcttatgcttctggccttccggtagttatagaaatagtgggttctaacttgtttggaa 27426508  T
Q  201 aga 203  Q
    |||    
T  27426507 aga 27426505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 41 - 203
Target Start/End: Complemental strand, 27610175 - 27610013
Alignment:
Q  41 gaagggttgtgtaggacagaagctcttgaattgttgaggtggatggcttttaagaataacaaagtaccttcaatttatgaagaagttttaaaccgtgcag 140  Q
    |||||| ||| | |||||||||||||||||||||||||||||||||||||||| | | |||| || ||||||  ||| |||||  ||||||||||||| |    
T  27610175 gaagggctgtatgggacagaagctcttgaattgttgaggtggatggcttttaaaagtgacaatgttccttcaggttacgaagagattttaaaccgtgctg 27610076  T
Q  141 tttcatatgcttcgggacttcccttagttttagaagtagtgtgttccaacttgtttggaaaga 203  Q
    || |||||||||| || ||||| |||||| ||||| ||||| |||| ||||||||||||||||    
T  27610075 ttgcatatgcttctggccttccgttagttatagaaatagtgggttctaacttgtttggaaaga 27610013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 55 - 204
Target Start/End: Complemental strand, 27676661 - 27676512
Alignment:
Q  55 gacagaagctcttgaattgttgaggtggatggcttttaagaataacaaagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttcg 154  Q
    ||||||||||||||||||||||||||||| ||||||||| ||| | ||||| ||||||| |||||||||  ||||||| |||||||||  |||||||||     
T  27676661 gacagaagctcttgaattgttgaggtggaaggcttttaaaaatgagaaagttccttcaagttatgaagacattttaaagcgtgcagttgtatatgcttct 27676562  T
Q  155 ggacttcccttagttttagaagtagtgtgttccaacttgtttggaaagag 204  Q
    || ||||| ||||   ||||||||||| |||| |||||||||||||||||    
T  27676561 ggccttccattagcgatagaagtagtgggttctaacttgtttggaaagag 27676512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 58 - 209
Target Start/End: Original strand, 26885214 - 26885362
Alignment:
Q  58 agaagctcttgaattgttgaggtggatggcttttaagaataacaaagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttcggga 157  Q
    ||||||| ||||||||||||||||| |||| |||||  |   |||||| |||| |  |||||||||  |||||||||||||||||||||||||||||||     
T  26885214 agaagcttttgaattgttgaggtggctggcctttaaaga---caaagttcctttaggttatgaagagattttaaaccgtgcagtttcatatgcttcgggc 26885310  T
Q  158 cttcccttagttttagaagtagtgtgttccaacttgtttggaaagaggatag 209  Q
    ||||| |||||| ||||| ||||| |||||||||||||||||||||| ||||    
T  26885311 cttcctttagttatagaaatagtgggttccaacttgtttggaaagagcatag 26885362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 27697662 - 27697479
Alignment:
Q  20 atagaaagaaagtatgcattagaagggttgtgtaggacagaagctcttgaattgttgaggtggatggcttttaagaataacaaagtaccttcaatttatg 119  Q
    ||||||| || ||||||| || ||||||||  | |||||||||||||||||||||||||||||||||||||||| | | |||| || || ||||  ||      
T  27697662 atagaaaaaacgtatgcagtaaaagggttgaatgggacagaagctcttgaattgttgaggtggatggcttttaaaagtgacaatgttccatcaaggtaca 27697563  T
Q  120 aagaagttttaaaccgtgcagtttcatatgcttcgggacttcccttagttttagaagtagtgtgttccaacttgtttggaaaga 203  Q
    ||||  ||||||  |||||||||||||||| ||| || ||||| |||||| ||||| ||||| |||| ||||||||||||||||    
T  27697562 aagagattttaagtcgtgcagtttcatatgtttctggccttccgttagttatagaaatagtgggttctaacttgtttggaaaga 27697479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 55 - 204
Target Start/End: Original strand, 26862721 - 26862870
Alignment:
Q  55 gacagaagctcttgaattgttgaggtggatggcttttaagaataacaaagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttcg 154  Q
    |||||||||| |||||||||||||||||||||||||||| |||    |||| ||||| | |||| | || |||||||||||||||||| ||||||||||     
T  26862721 gacagaagcttttgaattgttgaggtggatggcttttaaaaatggtgaagttccttcgagttataacgatgttttaaaccgtgcagttgcatatgcttcc 26862820  T
Q  155 ggacttcccttagttttagaagtagtgtgttccaacttgtttggaaagag 204  Q
    || ||||| |||||| | ||| ||||| |||| |||||||||||||||||    
T  26862821 ggccttccgttagttctcgaaatagtgggttctaacttgtttggaaagag 26862870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 55 - 167
Target Start/End: Original strand, 25580863 - 25580975
Alignment:
Q  55 gacagaagctcttgaattgttgaggtggatggcttttaagaataacaaagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttcg 154  Q
    ||||||||||||||||||||||||| | ||||||||||| ||| ||||||| |||||||||||||||||  |||||||||||| |||| | ||||| ||     
T  25580863 gacagaagctcttgaattgttgaggcgaatggcttttaaaaatgacaaagttccttcaatttatgaagagattttaaaccgtgtagttacttatgcatct 25580962  T
Q  155 ggacttcccttag 167  Q
    || || |||||||    
T  25580963 gggctgcccttag 25580975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 55 - 167
Target Start/End: Original strand, 26144009 - 26144121
Alignment:
Q  55 gacagaagctcttgaattgttgaggtggatggcttttaagaataacaaagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttcg 154  Q
    ||||||||||||||||||||||||| | ||||||||||| ||| ||||||| ||||||| |||||||||| |||||||||||| |||| | ||||| ||     
T  26144009 gacagaagctcttgaattgttgaggcgaatggcttttaaaaatgacaaagttccttcaagttatgaagaaattttaaaccgtgtagttacttatgcatct 26144108  T
Q  155 ggacttcccttag 167  Q
    || || |||||||    
T  26144109 ggcctgcccttag 26144121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 55 - 167
Target Start/End: Original strand, 25484200 - 25484312
Alignment:
Q  55 gacagaagctcttgaattgttgaggtggatggcttttaagaataacaaagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttcg 154  Q
    ||||||||||||||||||||||||| | ||||||||||| ||| ||||||| ||||||| |||||||||  |||||||||||| |||| | ||||| ||     
T  25484200 gacagaagctcttgaattgttgaggcgaatggcttttaaaaatgacaaagttccttcaagttatgaagagattttaaaccgtgtagttacttatgcatct 25484299  T
Q  155 ggacttcccttag 167  Q
    || || |||||||    
T  25484300 ggcctgcccttag 25484312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 126 - 209
Target Start/End: Original strand, 26636858 - 26636941
Alignment:
Q  126 ttttaaaccgtgcagtttcatatgcttcgggacttcccttagttttagaagtagtgtgttccaacttgtttggaaagaggatag 209  Q
    |||||||||||||||||  ||||||||| || ||||| |||| ||||||||||||| |||||||||||||||||||||| ||||    
T  26636858 ttttaaaccgtgcagttaaatatgcttctggccttccattagctttagaagtagtgggttccaacttgtttggaaagagtatag 26636941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 126 - 209
Target Start/End: Original strand, 26742824 - 26742907
Alignment:
Q  126 ttttaaaccgtgcagtttcatatgcttcgggacttcccttagttttagaagtagtgtgttccaacttgtttggaaagaggatag 209  Q
    |||||||||||||||||  ||||||||| || ||||| |||| ||||||||||||| |||||||||||||||||||||| ||||    
T  26742824 ttttaaaccgtgcagttaaatatgcttctggccttccattagctttagaagtagtgggttccaacttgtttggaaagagtatag 26742907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 126 - 209
Target Start/End: Original strand, 26849924 - 26850007
Alignment:
Q  126 ttttaaaccgtgcagtttcatatgcttcgggacttcccttagttttagaagtagtgtgttccaacttgtttggaaagaggatag 209  Q
    ||||||| |||||||||  ||||||||| || ||||| |||| ||||||||||||| |||||||||||||||||||||| ||||    
T  26849924 ttttaaatcgtgcagttaaatatgcttctggccttccattagctttagaagtagtgggttccaacttgtttggaaagagtatag 26850007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 126 - 209
Target Start/End: Original strand, 26960337 - 26960420
Alignment:
Q  126 ttttaaaccgtgcagtttcatatgcttcgggacttcccttagttttagaagtagtgtgttccaacttgtttggaaagaggatag 209  Q
    |||||||||||||||||  ||||||||| || ||||| |||| ||||||||||||| |||||||||||||||| ||||| ||||    
T  26960337 ttttaaaccgtgcagttaaatatgcttctggccttccattagctttagaagtagtgggttccaacttgtttggcaagagtatag 26960420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 126 - 209
Target Start/End: Complemental strand, 27664184 - 27664101
Alignment:
Q  126 ttttaaaccgtgcagtttcatatgcttcgggacttcccttagttttagaagtagtgtgttccaacttgtttggaaagaggatag 209  Q
    |||||||||||||||||  ||||||||| || ||||| |||| |||| |||||||| |||||||||||||||||||||| ||||    
T  27664184 ttttaaaccgtgcagttgaatatgcttctggccttccattagctttaaaagtagtgggttccaacttgtttggaaagagtatag 27664101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 3 - 173
Target Start/End: Complemental strand, 25492412 - 25492242
Alignment:
Q  3 tactaaccagtcatgatatagaaagaaagtatgcattagaagggttgtgtaggacagaagctcttgaattgttgaggtggatggcttttaagaataacaa 102  Q
    |||||||||||||||  |||||||| | | ||||| |||||| ||||  | ||  |||||||||||||||| | | ||||||||||||||| ||| |||     
T  25492412 tactaaccagtcatgggatagaaagtatgcatgcagtagaagagttgcatggggaagaagctcttgaattgcttatgtggatggcttttaaaaatgacag 25492313  T
Q  103 agtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttcgggacttcccttagttttag 173  Q
    ||| |||||||||||||||||  ||||||  | |||| || | |||||||| || ||||| |||| |||||    
T  25492312 agttccttcaatttatgaagacattttaacacttgcaattacctatgcttctggccttccattagctttag 25492242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 203
Target Start/End: Original strand, 28326622 - 28326767
Alignment:
Q  58 agaagctcttgaattgttgaggtggatggcttttaagaataacaaagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttcggga 157  Q
    ||||||||||||||||||||||||||   |||| || |||||||||||   ||||| || ||| |   ||||| || |||||||  | |||||||| ||     
T  28326622 agaagctcttgaattgttgaggtggaatactttcaaaaataacaaagtcgattcaaattttgacggcattttatactgtgcagtaacttatgcttctggc 28326721  T
Q  158 cttcccttagttttagaagtagtgtgttccaacttgtttggaaaga 203  Q
    ||||| || | ||||||||||||| |||||||||||||||||||||    
T  28326722 cttccattggctttagaagtagtgggttccaacttgtttggaaaga 28326767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 203
Target Start/End: Original strand, 28504258 - 28504403
Alignment:
Q  58 agaagctcttgaattgttgaggtggatggcttttaagaataacaaagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttcggga 157  Q
    ||||||||||||||||||||||||||   |||| || |||||||||||   ||||| || ||| |   ||||| || |||||||  | |||||||| ||     
T  28504258 agaagctcttgaattgttgaggtggaatactttcaaaaataacaaagtcgattcaaattttgacggcattttatactgtgcagtaacttatgcttctggc 28504357  T
Q  158 cttcccttagttttagaagtagtgtgttccaacttgtttggaaaga 203  Q
    ||||| || | ||||||||||||| |||||||||||||||||||||    
T  28504358 cttccattggctttagaagtagtgggttccaacttgtttggaaaga 28504403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 55 - 167
Target Start/End: Original strand, 25539684 - 25539796
Alignment:
Q  55 gacagaagctcttgaattgttgaggtggatggcttttaagaataacaaagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttcg 154  Q
    ||||||||||||||||||||||||| | ||||| ||||| ||| ||||||| ||||| | |||||||||  |||||||||||| |||| | ||||| ||     
T  25539684 gacagaagctcttgaattgttgaggcgaatggcgtttaaaaatgacaaagttccttcgagttatgaagagattttaaaccgtgtagttacttatgcatct 25539783  T
Q  155 ggacttcccttag 167  Q
    || || |||||||    
T  25539784 ggcctacccttag 25539796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 126 - 203
Target Start/End: Original strand, 26950955 - 26951032
Alignment:
Q  126 ttttaaaccgtgcagtttcatatgcttcgggacttcccttagttttagaagtagtgtgttccaacttgtttggaaaga 203  Q
    |||||||||||||||||  ||||||| | || ||||| |||| ||||||||||||| |||| ||||||||||||||||    
T  26950955 ttttaaaccgtgcagttaaatatgctgctggccttccattagctttagaagtagtgggttctaacttgtttggaaaga 26951032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 58 - 203
Target Start/End: Original strand, 28186538 - 28186683
Alignment:
Q  58 agaagctcttgaattgttgaggtggatggcttttaagaataacaaagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttcggga 157  Q
    |||||||||||||||||||| ||||| |||||| || |||||||||||   | ||| ||  ||    |||||| ||| ||||||  | |||||||| ||     
T  28186538 agaagctcttgaattgttgacgtggaaggctttaaaaaataacaaagttgatacaaatttcgacagcgttttacaccatgcagtaacttatgcttctggc 28186637  T
Q  158 cttcccttagttttagaagtagtgtgttccaacttgtttggaaaga 203  Q
    ||||| || | ||||||||||||| |||||||||||||||||||||    
T  28186638 cttccattggctttagaagtagtgggttccaacttgtttggaaaga 28186683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 25075079 - 25075153
Alignment:
Q  126 ttttaaaccgtgcagtttcatatgcttcgggacttcccttagttttagaagtagtgtgttccaacttgtttggaa 200  Q
    |||||||||||||| ||  ||||||||| || ||||| |||| ||||||||| ||| ||||||||||||||||||    
T  25075079 ttttaaaccgtgcaattaaatatgcttctggccttccattagctttagaagttgtgggttccaacttgtttggaa 25075153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 167
Target Start/End: Original strand, 26057041 - 26057175
Alignment:
Q  33 atgcattagaagggttgtgtaggacagaagctcttgaattgttgaggtggatggcttttaagaataacaaagtaccttcaatttatgaagaagttttaaa 132  Q
    ||||| |||||||||||  |  |||||||||||||||||| |||||  | |  |||||||| ||| ||||||| ||||||| |||||||||  |||||||    
T  26057041 atgcagtagaagggttgaatgagacagaagctcttgaattattgagccgaaatgcttttaaaaatgacaaagttccttcaagttatgaagatattttaaa 26057140  T
Q  133 ccgtgcagtttcatatgcttcgggacttcccttag 167  Q
    ||||| |||| | ||||| || || ||||| ||||    
T  26057141 ccgtgtagttacttatgcatctggccttccgttag 26057175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 167
Target Start/End: Original strand, 26077011 - 26077145
Alignment:
Q  33 atgcattagaagggttgtgtaggacagaagctcttgaattgttgaggtggatggcttttaagaataacaaagtaccttcaatttatgaagaagttttaaa 132  Q
    ||||| |||||||||||  |  |||||||||||||||||| |||||  | |  |||||||| ||| ||||||| ||||||| |||||||||  |||||||    
T  26077011 atgcagtagaagggttgaatgagacagaagctcttgaattattgagccgaaatgcttttaaaaatgacaaagttccttcaagttatgaagatattttaaa 26077110  T
Q  133 ccgtgcagtttcatatgcttcgggacttcccttag 167  Q
    ||||| |||| | ||||| || || ||||| ||||    
T  26077111 ccgtgtagttacttatgcatctggccttccgttag 26077145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 203
Target Start/End: Complemental strand, 28296778 - 28296633
Alignment:
Q  58 agaagctcttgaattgttgaggtggatggcttttaagaataacaaagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttcggga 157  Q
    ||||||||||||||||||||| ||||  ||||| || |||||||||||   | ||| || ||| ||  ||||| |||  || ||  | |||||||| ||     
T  28296778 agaagctcttgaattgttgagatggaatgctttcaaaaataacaaagtcgatacaaattttgacgacattttacaccaggctgtaacttatgcttctggc 28296679  T
Q  158 cttcccttagttttagaagtagtgtgttccaacttgtttggaaaga 203  Q
    ||||| || | ||||||||||||| |||||||||||||||||||||    
T  28296678 cttccattggctttagaagtagtgggttccaacttgtttggaaaga 28296633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 203
Target Start/End: Original strand, 28515295 - 28515440
Alignment:
Q  58 agaagctcttgaattgttgaggtggatggcttttaagaataacaaagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttcggga 157  Q
    ||||||||||||||||||||| ||||  ||||| || |||||||||||   | ||| || ||| ||  ||||| |||  || ||  | |||||||| ||     
T  28515295 agaagctcttgaattgttgagatggaatgctttcaaaaataacaaagtcgatacaaattttgacgacattttacaccaggctgtaacttatgcttctggc 28515394  T
Q  158 cttcccttagttttagaagtagtgtgttccaacttgtttggaaaga 203  Q
    ||||| || | ||||||||||||| |||||||||||||||||||||    
T  28515395 cttccattggctttagaagtagtgggttccaacttgtttggaaaga 28515440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 167
Target Start/End: Complemental strand, 27530364 - 27530233
Alignment:
Q  33 atgcattagaagggttgtgtaggacagaagctcttgaattgttgaggtggatggcttttaagaataacaaagtaccttcaatttatgaagaagttttaaa 132  Q
    ||||| |||||||||||  |  |||||||||||| ||||||||||||||||||||||| |  || || || || ||||||| | |||||||  |||||||    
T  27530364 atgcagtagaagggttgaatgcgacagaagctctcgaattgttgaggtggatggctttca--aagaa-aatgttccttcaagtcatgaagacattttaaa 27530268  T
Q  133 ccgtgcagtttcatatgcttcgggacttcccttag 167  Q
    ||||||| || | |||||||| || ||||| ||||    
T  27530267 ccgtgcacttacttatgcttctggccttccattag 27530233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 167
Target Start/End: Original strand, 25512010 - 25512144
Alignment:
Q  33 atgcattagaagggttgtgtaggacagaagctcttgaattgttgaggtggatggcttttaagaataacaaagtaccttcaatttatgaagaagttttaaa 132  Q
    ||||| |||||||||||  |  || ||||||||||   ||||||||| | |||||||||||  || ||||||| ||||||| |||||||||  |||||||    
T  25512010 atgcagtagaagggttgaatgagatagaagctcttattttgttgaggcgaatggcttttaaacatgacaaagttccttcaagttatgaagagattttaaa 25512109  T
Q  133 ccgtgcagtttcatatgcttcgggacttcccttag 167  Q
    ||||| |||| | ||||| || || ||||| ||||    
T  25512110 ccgtgtagttacttatgcatctggccttccgttag 25512144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 204
Target Start/End: Original strand, 26812759 - 26812818
Alignment:
Q  145 atatgcttcgggacttcccttagttttagaagtagtgtgttccaacttgtttggaaagag 204  Q
    |||| |||| || ||||| |||| | ||||||||||| ||||||||||||||||||||||    
T  26812759 atatacttctggccttccattagctatagaagtagtgggttccaacttgtttggaaagag 26812818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 209
Target Start/End: Original strand, 26978612 - 26978675
Alignment:
Q  146 tatgcttcgggacttcccttagttttagaagtagtgtgttccaacttgtttggaaagaggatag 209  Q
    |||||||| || ||||| |||| ||||||||||||| |||| | ||||||||||||||| ||||    
T  26978612 tatgcttctggtcttccattagctttagaagtagtgggttcaagcttgtttggaaagagtatag 26978675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 203
Target Start/End: Original strand, 28182373 - 28182407
Alignment:
Q  169 tttagaagtagtgtgttccaacttgtttggaaaga 203  Q
    ||||||||||||| |||||||||||||||||||||    
T  28182373 tttagaagtagtgggttccaacttgtttggaaaga 28182407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 202
Target Start/End: Original strand, 28140747 - 28140823
Alignment:
Q  126 ttttaaaccgtgcagtttcatatgcttcgggacttcccttagttttagaagtagtgtgttccaacttgtttggaaag 202  Q
    ||||||||||||||||| | ||||| || || ||||| || | ||||||||||||  |||| | |||||||||||||    
T  28140747 ttttaaaccgtgcagttacttatgcctctggccttccattggctttagaagtagttggttctagcttgtttggaaag 28140823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 39 - 209
Target Start/End: Complemental strand, 29272895 - 29272725
Alignment:
Q  39 tagaagggttgtgtaggacagaagctcttgaattgttgaggtggatggcttttaagaataacaaagtaccttcaatttatgaagaagttttaaaccgtgc 138  Q
    |||||||| ||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  29272895 tagaagggctgtatgggacaaaagctcttgaattgttgaggtggatggcttttaagaataacaaagtaccttcaatttatgaagacgttttaaatcgtgc 29272796  T
Q  139 agtttcatatgcttcgggacttcccttagttttagaagtagtgtgttccaacttgtttggaaagaggatag 209  Q
    |||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  29272795 agtttcatatgcttcgggccttcccttagttttagaaatagtgggttccaacttgtttggaaagaggatag 29272725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 120; Significance: 1e-61; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 54 - 209
Target Start/End: Complemental strand, 3754 - 3599
Alignment:
Q  54 ggacagaagctcttgaattgttgaggtggatggcttttaagaataacaaagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttc 153  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||    
T  3754 ggacagaagctcttgagttgttgagatggatggcttttaagaataacaaagtaccttcaagttatgaagacgttttaaatcgtgcagtttcatatgcttc 3655  T
Q  154 gggacttcccttagttttagaagtagtgtgttccaacttgtttggaaagaggatag 209  Q
    ||| |||||||||||||||||| ||||| ||||||||||||||||||||| |||||    
T  3654 gggccttcccttagttttagaaatagtgggttccaacttgtttggaaagacgatag 3599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 56 - 209
Target Start/End: Complemental strand, 12715 - 12562
Alignment:
Q  56 acagaagctcttgaattgttgaggtggatggcttttaagaataacaaagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttcgg 155  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||    
T  12715 acagaagctcttgagttgttgagatggatggcttttaagaataacaaagtaccttcaagttatgaagacgttttaaatcgtgcagtttcatatgcttcgg 12616  T
Q  156 gacttcccttagttttagaagtagtgtgttccaacttgtttggaaagaggatag 209  Q
    | |||||||||||||||||| ||||| ||||||||||||||||||||| |||||    
T  12615 gccttcccttagttttagaaatagtgggttccaacttgtttggaaagacgatag 12562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 56 - 209
Target Start/End: Original strand, 8629 - 8782
Alignment:
Q  56 acagaagctcttgaattgttgaggtggatggcttttaagaataacaaagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttcgg 155  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||    
T  8629 acagaagctcttgagttgttgagatggatggcttttaagaataacaaagtaccttcaagttatgaagacgttttaaatcgtgcagtttcatatgcttcgg 8728  T
Q  156 gacttcccttagttttagaagtagtgtgttccaacttgtttggaaagaggatag 209  Q
    | |||||||||||||||||| ||||| ||||||||||||||||||||| |||||    
T  8729 gccttcccttagttttagaaatagtgggttccaacttgtttggaaagacgatag 8782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 28126770 - 28126562
Alignment:
Q  1 cttactaaccagtcatgatatagaaagaaagtatgcattagaagggttgtgtaggacagaagctcttgaattgttgaggtggatggcttttaagaataac 100  Q
    |||||||||| ||||||  |||||||| | | ||||  || ||||||||| |   ||| |||| |||||||||||||||||||||||||||||  |||||    
T  28126770 cttactaacctgtcatgggatagaaagtacgcatgcggtaaaagggttgtatgtaacaaaagcacttgaattgttgaggtggatggcttttaaacataac 28126671  T
Q  101 aaagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttcgggacttcccttagttttagaagtagtgtgttccaacttgtttggaa 200  Q
    ||||| ||||||| |||||| || ||||||||||| ||||||||||||||||| || |||||||||||| ||||| ||||| |||||||||| |||||||    
T  28126670 aaagttccttcaagttatgatgatgttttaaaccgggcagtttcatatgcttcaggccttcccttagttatagaaatagtgggttccaacttatttggaa 28126571  T
Q  201 agaggatag 209  Q
    |||| ||||    
T  28126570 agagcatag 28126562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 28163471 - 28163298
Alignment:
Q  1 cttactaaccagtcatgatatagaaagaaagtatgcattagaagggttgtgtaggacagaagctcttgaattgttgaggtggatggcttttaagaataac 100  Q
    |||||||||| ||||||  |||||||| | | || |  |||||||||||| | |||| ||||| ||||||||||||| ||||||||||||||| ||||||    
T  28163471 cttactaacctgtcatgggatagaaagtatgcattcggtagaagggttgtatgggacggaagcgcttgaattgttgacgtggatggcttttaaaaataac 28163372  T
Q  101 aaagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttcgggacttcccttagttttaga 174  Q
    ||||| ||||||| ||||||||| |||||||| |||||||||||||||||||| || |||||||||||| ||||    
T  28163371 aaagttccttcaagttatgaagatgttttaaatcgtgcagtttcatatgcttcaggccttcccttagttataga 28163298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 2 - 209
Target Start/End: Complemental strand, 267434 - 267227
Alignment:
Q  2 ttactaaccagtcatgatatagaaagaaagtatgcattagaagggttgtgtaggacagaagctcttgaattgttgaggtggatggcttttaagaataaca 101  Q
    ||||||||| ||||||  |||||||| | | ||| | |||||||||||| | |||| |||||||||||||||||||| |||||||||||||| ||| |      
T  267434 ttactaacctgtcatgggatagaaagtacgcatgaagtagaagggttgtatgggaccgaagctcttgaattgttgagttggatggcttttaaaaatgatc 267335  T
Q  102 aagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttcgggacttcccttagttttagaagtagtgtgttccaacttgtttggaaa 201  Q
     ||| || ||||||||  | ||  ||||||  ||||||||| | |||||||| || ||||| |||||||||||| | ||| |||| ||||||||||||||    
T  267334 cagttccatcaatttacaatgagattttaattcgtgcagttgcttatgcttctggccttccgttagttttagaaattgtgggttctaacttgtttggaaa 267235  T
Q  202 gaggatag 209  Q
    ||| ||||    
T  267234 gagcatag 267227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 59 - 202
Target Start/End: Original strand, 26137033 - 26137176
Alignment:
Q  59 gaagctcttgaattgttgaggtggatggcttttaagaataacaa-agtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttcggga 157  Q
    ||||||||||||||||| ||||||||||||||||| | |||| | | |  || ||| ||||||  |  |||||||| ||||||||  ||||||||| ||     
T  26137033 gaagctcttgaattgtttaggtggatggcttttaaaagtaaccacaatgact-caagttatgattatattttaaacagtgcagttaaatatgcttctggc 26137131  T
Q  158 cttcccttagttttagaagtagtgtgttccaacttgtttggaaag 202  Q
    ||||| |||| ||||||||||||| |||||| |||||||||||||    
T  26137132 cttccgttagctttagaagtagtgggttccagcttgtttggaaag 26137176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 2634 - 2432
Alignment:
Q  1 cttactaaccagtcatgatatagaaagaaagtatgcattagaagggttgtgtaggacagaagctcttgaattgttgaggtggatggcttttaagaataac 100  Q
    |||||||||| ||||||  ||| |||| | | ||| | |||||||||||| | |||||||||||||||||||||||||||||||||||||||| | | ||    
T  2634 cttactaacctgtcatgggataaaaagtatgcatgaagtagaagggttgtatgggacagaagctcttgaattgttgaggtggatggcttttaaaagtgac 2535  T
Q  101 aaagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttcgggacttcccttagttttagaagtagtgtgttccaacttgtttggaa 200  Q
    || || ||||||  ||| |||||  ||||||||||||||||| |||||||||| || ||||| |||||| ||||| ||||| |||| ||||| | |||||    
T  2534 aatgttccttcaggttacgaagagattttaaaccgtgcagttgcatatgcttctggccttccgttagttatagaaatagtgggttctaacttatctggaa 2435  T
Q  201 aga 203  Q
    |||    
T  2434 aga 2432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 62 - 204
Target Start/End: Complemental strand, 18654507 - 18654365
Alignment:
Q  62 gctcttgaattgttgaggtggatggcttttaagaataacaaagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttcgggacttc 161  Q
    |||||||||||||||||||||||||||||||| | | ||||||| ||||||| |||||||||  ||||||||||||||||| | |||||||| || ||||    
T  18654507 gctcttgaattgttgaggtggatggcttttaaaatttacaaagttccttcaagttatgaagagattttaaaccgtgcagttgcgtatgcttctggccttc 18654408  T
Q  162 ccttagttttagaagtagtgtgttccaacttgtttggaaagag 204  Q
    | |||| | ||||||| ||| ||||||||||||||||||||||    
T  18654407 cattagctatagaagtcgtgggttccaacttgtttggaaagag 18654365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 62 - 204
Target Start/End: Complemental strand, 18723115 - 18722973
Alignment:
Q  62 gctcttgaattgttgaggtggatggcttttaagaataacaaagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttcgggacttc 161  Q
    |||||||||||||||||||||||||||||||| | | ||||||| ||||||| |||||||||  |||||||||| |||||| | |||||||| || ||||    
T  18723115 gctcttgaattgttgaggtggatggcttttaaaagttacaaagttccttcaagttatgaagagattttaaaccgagcagttgcgtatgcttctggccttc 18723016  T
Q  162 ccttagttttagaagtagtgtgttccaacttgtttggaaagag 204  Q
    | |||| | ||||||||||| ||||||||||||||||||||||    
T  18723015 cattagctatagaagtagtgggttccaacttgtttggaaagag 18722973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 18074848 - 18075050
Alignment:
Q  1 cttactaaccagtcatgatatagaaagaaagtatgcattagaagggttgtgtaggacagaagctcttgaattgttgaggtggatggcttttaagaataac 100  Q
    ||||||| || ||||||| ||||||| ||  |||||| || ||||||||  |  ||||||||||||||||||||||||||||||||||||||| ||| ||    
T  18074848 cttactagcctgtcatgagatagaaaaaacatatgcagtaaaagggttgaatgtgacagaagctcttgaattgttgaggtggatggcttttaaaaatgac 18074947  T
Q  101 aaagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttcgggacttcccttagttttagaagtagtgtgttccaacttgtttggaa 200  Q
    ||||| ||||||| ||||||| |  |||| || |||| |||| | |||||||| || |||||  ||||| ||||| ||||| |||| |||||||||||||    
T  18074948 aaagttccttcaagttatgaaaagattttgaatcgtgtagttgcttatgcttctggccttccggtagttatagaaatagtgggttctaacttgtttggaa 18075047  T
Q  201 aga 203  Q
    |||    
T  18075048 aga 18075050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 62 - 204
Target Start/End: Complemental strand, 18698430 - 18698288
Alignment:
Q  62 gctcttgaattgttgaggtggatggcttttaagaataacaaagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttcgggacttc 161  Q
    |||||||||||||||||||||||||||||||| ||| ||||||| ||||||| |||||||||  |||| |||| |||||||   |||||||| || ||||    
T  18698430 gctcttgaattgttgaggtggatggcttttaaaaattacaaagttccttcaagttatgaagagatttttaaccatgcagttgtgtatgcttctggccttc 18698331  T
Q  162 ccttagttttagaagtagtgtgttccaacttgtttggaaagag 204  Q
    | |||| | ||||||||||| ||||||||||||||||||||||    
T  18698330 cattagctctagaagtagtgggttccaacttgtttggaaagag 18698288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 62 - 204
Target Start/End: Complemental strand, 18730534 - 18730392
Alignment:
Q  62 gctcttgaattgttgaggtggatggcttttaagaataacaaagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttcgggacttc 161  Q
    |||||||||||||||||||||||||||||||| ||| ||||||| ||||||| |||||||||  |||| |||| |||||||   |||||||| || ||||    
T  18730534 gctcttgaattgttgaggtggatggcttttaaaaattacaaagttccttcaagttatgaagagatttttaaccatgcagttgtgtatgcttctggccttc 18730435  T
Q  162 ccttagttttagaagtagtgtgttccaacttgtttggaaagag 204  Q
    | |||| | ||||||||||| ||||||||||||||||||||||    
T  18730434 cattagctctagaagtagtgggttccaacttgtttggaaagag 18730392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 62 - 203
Target Start/End: Complemental strand, 18678590 - 18678449
Alignment:
Q  62 gctcttgaattgttgaggtggatggcttttaagaataacaaagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttcgggacttc 161  Q
    |||||||||||||||||||||||||||||||| | | ||||||| ||||||| |||||||||  ||||||| |||||||||   |||||||| || ||||    
T  18678590 gctcttgaattgttgaggtggatggcttttaaaagttacaaagttccttcaagttatgaagagattttaaaacgtgcagttgtgtatgcttctggccttc 18678491  T
Q  162 ccttagttttagaagtagtgtgttccaacttgtttggaaaga 203  Q
    | |||| | ||||||||||| |||||||||||||||||||||    
T  18678490 cattagctatagaagtagtgggttccaacttgtttggaaaga 18678449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 62 - 204
Target Start/End: Complemental strand, 18688656 - 18688514
Alignment:
Q  62 gctcttgaattgttgaggtggatggcttttaagaataacaaagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttcgggacttc 161  Q
    |||||||||||||||||||||||||||||||| | | | ||||| ||||||| |||||||||  ||||||||||||||||    |||||||| || ||||    
T  18688656 gctcttgaattgttgaggtggatggcttttaaaagttataaagttccttcaagttatgaagagattttaaaccgtgcagtcgtgtatgcttctggccttc 18688557  T
Q  162 ccttagttttagaagtagtgtgttccaacttgtttggaaagag 204  Q
    | |||| | ||||||||||| ||||||||||||||||||||||    
T  18688556 cattagctatagaagtagtgggttccaacttgtttggaaagag 18688514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 60656 - 60858
Alignment:
Q  1 cttactaaccagtcatgatatagaaagaaagtatgcattagaagggttgtgtaggacagaagctcttgaattgttgaggtggatggcttttaagaataac 100  Q
    ||||||| || ||||||| ||||||| ||  |||||| || ||||||||  |  ||||||||||||||||||||||||||||||||||||||| ||| ||    
T  60656 cttactagcctgtcatgagatagaaaaaacatatgcagtaaaagggttgaatgtgacagaagctcttgaattgttgaggtggatggcttttaaaaatgac 60755  T
Q  101 aaagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttcgggacttcccttagttttagaagtagtgtgttccaacttgtttggaa 200  Q
    ||||| ||||||| ||||||| |  |||| || |||| |||| | |||||||| || |||||  ||||| ||||| ||||| |||| |||||||||||||    
T  60756 aaagttccttcaagttatgaaaagattttgaatcgtgtagttgcttatgcttctggccttccggtagttatagaaatagtgggttctaacttgtttggaa 60855  T
Q  201 aga 203  Q
    |||    
T  60856 aga 60858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1870 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 146 - 209
Target Start/End: Original strand, 1 - 64
Alignment:
Q  146 tatgcttcgggacttcccttagttttagaagtagtgtgttccaacttgtttggaaagaggatag 209  Q
    ||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||| |||||    
T  1 tatgcttcgggccttcccttagttttagaaatagtgggttccaacttgtttggaaagacgatag 64  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 203
Target Start/End: Complemental strand, 57332 - 57187
Alignment:
Q  58 agaagctcttgaattgttgaggtggatggcttttaagaataacaaagtaccttcaatttatgaagaagttttaaaccgtgcagtttcatatgcttcggga 157  Q
    ||||||||||||||||||||||||||  ||||| || |||||||||||   | ||| ||  ||  | |||||| ||| ||||||  | |||||||| ||     
T  57332 agaagctcttgaattgttgaggtggaatgctttcaaaaataacaaagtcaatccaaatttcgacaacgttttacaccttgcagtaacttatgcttcaggc 57233  T
Q  158 cttcccttagttttagaagtagtgtgttccaacttgtttggaaaga 203  Q
    ||||| || |  |||||||||||| |||| ||||||||||||||||    
T  57232 cttccattggccttagaagtagtgggttcgaacttgtttggaaaga 57187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 202
Target Start/End: Complemental strand, 17992185 - 17992109
Alignment:
Q  126 ttttaaaccgtgcagtttcatatgcttcgggacttcccttagttttagaagtagtgtgttccaacttgtttggaaag 202  Q
    |||||||||||| ||||  ||||||| | || || || |||| ||||||||||||| ||||||||||||||||||||    
T  17992185 ttttaaaccgtgtagttaaatatgctgctggcctcccattagctttagaagtagtgggttccaacttgtttggaaag 17992109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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