View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14275_high_1 (Length: 857)
Name: NF14275_high_1
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_high_1 |
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| [»] scaffold0186 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 697; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 697; E-Value: 0
Query Start/End: Original strand, 64 - 841
Target Start/End: Complemental strand, 33200345 - 33199568
Alignment:
| Q |
64 |
tagaaagtctttatttatagcgaaaaactcatctactgattatctcttttaagcaaaatgggactttaacacgtagaaatgataatgatatcatgttatg |
163 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33200345 |
tagaaagtctttatttatagcgaaaaactcatccactgattatctcttttaagcaaaatgggactttaacacgtagaaatgataataatatcatgttatg |
33200246 |
T |
|
| Q |
164 |
gtcttgacgattgttagttaaatataaatgtgcatggtagcaaacaataacgacccttatcacattaatatgcagaaattgaatagtaacaccccacgtc |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
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| T |
33200245 |
gtcttgacgattgttagttaaatataaatgtgcatggtaacaaacaataacgacccttatcacattaatatgaagaaattgaaaagtaacaccccacgtc |
33200146 |
T |
|
| Q |
264 |
cccacatgcagcaagtgatggacattctggaaacttatccagaattagcatacgcatatattgaaagtcttacactttattacttgattgagacactgat |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
33200145 |
cccacatgcagcaagtgatggacattctggaaacttatccagaattagcatacgcatatattgaaaggcttacactttattacttgattgagacactgat |
33200046 |
T |
|
| Q |
364 |
gccaacatggatccataacattagtgagc-tcaactaccacgggttgcataaaagcatatataattcagctcacacatatgtggtatagtttgttgcctt |
462 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33200045 |
gccaacatggatccataacattagtgagcttcaactaccacgggttgcataaaagcatatataattcagctcacacatatgtggtatagtttgttgcctt |
33199946 |
T |
|
| Q |
463 |
tcatattttactagcaatggtaagatgctgggtgccattgtttggggtgtgggagtgatggtatactctgctgtgagcttgttgtggtacaagcatgtac |
562 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33199945 |
tcatattttactagcaatggtaagatgctgggtgccattgtttgggatgtgggagtgatggtatactctgctgtgagcttgttgtggtacaagcatgtac |
33199846 |
T |
|
| Q |
563 |
caatcctttttaagtggtacctcnnnnnnncttgaagtagaaatagaattaataaagttataattttgagttttgatattctaaaattataaatattcaa |
662 |
Q |
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||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33199845 |
caatcctttttaagtggtacctc-ttttttctttaagtagaaatagaattaataaagttataattttgagttttgatattctaaaattataaatattcaa |
33199747 |
T |
|
| Q |
663 |
tttttagtttaatatttgtattttgtttggcataagatattaaaaattaataaaatgtattatttaattattactggttcaagacctcggttaaaccatc |
762 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33199746 |
tttttagtttaatatttgtattttgtttggcataagatattaaaaattaataaaatatattatttaattattaccggttcaagacctcggttaaaccatt |
33199647 |
T |
|
| Q |
763 |
aaaccttgaaccaacgagtacaccagtttgatgttcggtcatgttttaattatctttgtttcaaacaccactgtgtatt |
841 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
33199646 |
aaaccttgaaccaacgagtacaccagtttgatgttcggtcatgttttaattatctttgtttcaaacaccactctgtatt |
33199568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 33200426 - 33200377
Alignment:
| Q |
16 |
taatactaggaatctaaagtctttttattttctttgttgataaatatcta |
65 |
Q |
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| T |
33200426 |
taatactaggaatctaaagtctttttattttctttgttgataaatatcta |
33200377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 662 - 717
Target Start/End: Complemental strand, 9682251 - 9682196
Alignment:
| Q |
662 |
atttttagtttaatatttgtattttgtttggcataagatattaaaaattaataaaa |
717 |
Q |
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| T |
9682251 |
atttttagcttagtatttgtattctgtttggtataagatattaaaaattaataaaa |
9682196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 619 - 732
Target Start/End: Original strand, 4077 - 4190
Alignment:
| Q |
619 |
gttataattttgagttttgatattctaaaattataaatattcaatttttagtttaatatttgtattttgtttggcataagatattaaaaattaat-aaaa |
717 |
Q |
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||||||| |||||||||| ||||| |||||||||||| ||| | |||||||||| |||||| ||||||| |||| ||||||| | ||||| ||| |||| |
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| T |
4077 |
gttataactttgagttttaatattataaaattataaaaatt-agtttttagtttgatatttatattttgcttggtataagatgtcaaaaaagaataaaaa |
4175 |
T |
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| Q |
718 |
tgtattatttaatta |
732 |
Q |
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| T |
4176 |
tatattatttaatta |
4190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 711
Target Start/End: Original strand, 109229 - 109276
Alignment:
| Q |
664 |
ttttagtttaatatttgtattttgtttggcataagatattaaaaatta |
711 |
Q |
| |
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||||||||| |||||| ||||||| |||| |||||||||||||||||| |
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| T |
109229 |
ttttagtttgatatttatattttgcttggtataagatattaaaaatta |
109276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 715
Target Start/End: Complemental strand, 47375766 - 47375715
Alignment:
| Q |
664 |
ttttagtttaatatttgtattttgtttggcataagatattaaaaattaataa |
715 |
Q |
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|||||||||||||||| |||||||| || ||||||||| |||||||||||| |
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| T |
47375766 |
ttttagtttaatattttaattttgttgggtataagatatgaaaaattaataa |
47375715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 243
Target Start/End: Original strand, 44770856 - 44770893
Alignment:
| Q |
206 |
aacaataacgacccttatcacattaatatgcagaaatt |
243 |
Q |
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|||||||||||| ||||||||||||||||| ||||||| |
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| T |
44770856 |
aacaataacgacacttatcacattaatatgaagaaatt |
44770893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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