View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14275_high_10 (Length: 590)
Name: NF14275_high_10
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 11 - 574
Target Start/End: Complemental strand, 28784271 - 28783692
Alignment:
| Q |
11 |
taatacatgtgtctgatccaaatgttgacaagaagcatgtaatttt-------------gttacaaagagattacaattt---aagagaaaagattgatt |
94 |
Q |
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| T |
28784271 |
taatacatgtatctgatccaaatgttgacaagatgcatgtaattttttccttttgttttgttacaaagagattacaattttttaagagaaaagattgatt |
28784172 |
T |
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| Q |
95 |
tcagttacattcttgtgcataattgttttgcagggttacatgtaacaattgactgcaaagaagcaaatggacattttaaaacaagaggggcaggtgagct |
194 |
Q |
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| T |
28784171 |
tcagttacattcttgtgcataattgttttgcagggttacatgtaacaattgactgcaaagaagcaaatggacattttaaaacaagaggggcaggtgagct |
28784072 |
T |
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| Q |
195 |
tgataaaaatggaaatttcaaagtatctcttcctcaagaaattgtaaatgaaggtgaattgaaagaagaatgttatgctcagctgcatagtgcaacagct |
294 |
Q |
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| T |
28784071 |
tgataaaaatggaaatttcaaagtatctcttcctcaagaaattgtaaatgaaggtgaattgaaagaagaatgttatgctcagctgcatagtgcaacagct |
28783972 |
T |
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| Q |
295 |
gcaccttgtcctgctcatgatggcctgcaaaacaccaaaattgtcatcaagtcaaaatctgatgacaaacacaccctaagtactgctgctgctggtaaac |
394 |
Q |
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| T |
28783971 |
gcaccttgtcctgctcatgatggcctgcaaaacaccaaaattgtcatcaagtcaaaatctgatgacaaacacaccctaagtactgctgctgctggtaaac |
28783872 |
T |
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| Q |
395 |
tcaaattttcatcagcaacatgtacctccaaattcttttggcctctcttcaaacatcctctttttcctaagcttcctcatcctgatttacctcaatttcc |
494 |
Q |
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| T |
28783871 |
tcaaattttcatcagcaacatgtacctccaaattcttttggcctctcttcaaacatcctctttttcctaagcttcctcatcctgatttacctcaatttcc |
28783772 |
T |
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| Q |
495 |
ccctaaagtttttccaacatttccaccaaagattttccataaacaccctctttttcctcctgttcctatctacaagaaac |
574 |
Q |
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| T |
28783771 |
ccctaaagtttttccaacatttccaccaaagattttccataaacaccctctttttcctcctgttcctatctacaagaaac |
28783692 |
T |
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