View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14275_high_23 (Length: 439)
Name: NF14275_high_23
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 1e-79; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 123 - 337
Target Start/End: Complemental strand, 11100339 - 11100125
Alignment:
| Q |
123 |
cttcaaggtagtaaatcaggccaaactccagaattgagctcaccaaatggcactgtctcttgcagattatcagccaccattgagtccatcaataattgac |
222 |
Q |
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| T |
11100339 |
cttcaaggtaataaatcaggccaaactccagaattgacctcaccaaatggcactgtccctgtcacattaccagccaccattgagtccatcaataattgtc |
11100240 |
T |
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| Q |
223 |
tttgcataatgtcatcattattaataggtatcccaacatagccatgacccatgattgccatttcttcactcctagatgctactagaggtggtggtggcac |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||| |||||||||| | ||| || |
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| T |
11100239 |
tttgcataatgtcatcattattaataggtatcccaacatggccatcacccataattgccatttcttcactcctagatgctgctagaggtggcgttggtac |
11100140 |
T |
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| Q |
323 |
tgttgccgccatttc |
337 |
Q |
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| T |
11100139 |
tgttgccgcgatttc |
11100125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 258 - 420
Target Start/End: Complemental strand, 11107068 - 11106906
Alignment:
| Q |
258 |
acatagccatgacccatgattgccatttcttcactcctagatgctactagaggtggtggtggcactgttgccgccatttcgagttggacttggttttgaa |
357 |
Q |
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| T |
11107068 |
acatggccatgacccataattgccatttcttcactcctagatggtgctagaggtggtggtggcactgttgccgccatttcgagttggacttggttttgaa |
11106969 |
T |
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| Q |
358 |
tagccatgatttgattttgatcattgttatcccatgcttccaaacgtctagcaacgtccttca |
420 |
Q |
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| T |
11106968 |
tagccatgatttgattttgatcattgatatcacatgcttccaaacgtctagcaacatccttca |
11106906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 309 - 420
Target Start/End: Complemental strand, 10987307 - 10987196
Alignment:
| Q |
309 |
ggtggtggtggcactgttgccgccatttcgagttggacttggttttgaatagccatgatttgattttgatcattgttatcccatgcttccaaacgtctag |
408 |
Q |
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| T |
10987307 |
ggtggtggtggtactgttgccgccatttcgagttggactttgttttgaatagccatgatttgattttgatcattgttatcccatgcttccaaacgtctag |
10987208 |
T |
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| Q |
409 |
caacgtccttca |
420 |
Q |
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| T |
10987207 |
caacgtccttca |
10987196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 109 - 249
Target Start/End: Complemental strand, 10987462 - 10987322
Alignment:
| Q |
109 |
aaatacatgattttcttcaaggtagtaaatcaggccaaactccagaattgagctcaccaaatggcactgtctcttgcagattatcagccaccattgagtc |
208 |
Q |
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| T |
10987462 |
aaatacatgatttctttcaaggaagtaaatcagaccagactccagaattgacctcaccaaatggcactgtctctgtcacattaccagccaccattgagtc |
10987363 |
T |
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| Q |
209 |
catcaataattgactttgcataatgtcatcattattaatag |
249 |
Q |
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| T |
10987362 |
catcaataattgactttgcataatgtcatcattattaatag |
10987322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 123 - 213
Target Start/End: Complemental strand, 11107164 - 11107074
Alignment:
| Q |
123 |
cttcaaggtagtaaatcaggccaaactccagaattgagctcaccaaatggcactgtctcttgcagattatcagccaccattgagtccatca |
213 |
Q |
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| T |
11107164 |
cttcaaggtaataaatgaggccaaactccagaattgacctcaccaaatggcactgtcccttgcagattaccagccaccattgagtccatca |
11107074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 285
Target Start/End: Original strand, 9894793 - 9894860
Alignment:
| Q |
218 |
ttgactttgcataatgtcatcattattaataggtatcccaacatagccatgacccatgattgccattt |
285 |
Q |
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| T |
9894793 |
ttgactttccatgatgtcaccattgttcatagtcatcccaacatagccatgacccatcattgccattt |
9894860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 290
Target Start/End: Complemental strand, 11108734 - 11108681
Alignment:
| Q |
237 |
tcattattaataggtatcccaacatagccatgacccatgattgccatttcttca |
290 |
Q |
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| T |
11108734 |
tcattattcataggtattccagcatggccaggacccatcattgccatttcttca |
11108681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 289
Target Start/End: Complemental strand, 13308800 - 13308724
Alignment:
| Q |
213 |
aataattgactttgcataatgtcatcattattaataggtatcccaacatagccatgacccatgattgccatttcttc |
289 |
Q |
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| T |
13308800 |
aataattgtctttgcatgatgtcaccattgctcatagttatcccaaaatggtcatggcccatcattgccatttcttc |
13308724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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