View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14275_high_3 (Length: 701)

Name: NF14275_high_3
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14275_high_3
NF14275_high_3
[»] chr4 (1 HSPs)
chr4 (16-695)||(6878654-6879330)


Alignment Details
Target: chr4 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 16 - 695
Target Start/End: Complemental strand, 6879330 - 6878654
Alignment:
Q  16 agcaacaatttagacacaactagaaaactacaaagcatagacacaaatatagtaagttgccaaaggagacaaaaa------------gctaacacagaac 103  Q
    ||||||||||||||||||||||     || ||||||||||||||||||||||||||||||||| || ||||||||            ||||| |||||||    
T  6879330 agcaacaatttagacacaacta-----ctgcaaagcatagacacaaatatagtaagttgccaagggtgacaaaaaactatacaaaaagctaaaacagaac 6879236  T
Q  104 atcctcctttattaatcaaaaggaacaacaattaagccccaaaagaccatataaatcaaagatttagattaatattatgatcattatgcaattatcttga 203  Q
    ||||||||||||||||||||||||||||||||||||         |||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  6879235 atcctcctttattaatcaaaaggaacaacaattaag---------accatacaaatcaaagatttagattaatattgtgatcattatgcaattatcttga 6879145  T
Q  204 aattacttgcaaaaacctcaaatattgttattaactgtaatttcaagattgctacatcaactaccttaatatatatattgcttcaactatcaatcacact 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  6879144 aattacttgcaaaaacctcaaatattgttattaactgtaatttcaagattgctacatcaactagcttaatagatatattgcttcaactatcaatcacact 6879045  T
Q  304 gcaacaatcacagcccaatcattataaacttaacaacataaattaatttttgaaaccttgcaattactcctaatnnnnnnnnnnnnnnnnnnnnnnctca 403  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||                      ||||    
T  6879044 gcaacaat-acagcccaatcatcataaacttaacaacataaattaatttttgaaaccttgcaattactcctaattatatattataatataatatatctca 6878946  T
Q  404 ctataatcttctctcacaccaatatacacaactcaaaccaaccaacacttccactatggcagtctctgccttctccaaatcagagtaatgcaatgtctgc 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6878945 ctataatcttctctcacaccaatatacacaactcaaaccaaccaacacttccactatggcagtctctgccttctccaaatcagagtaatgcaatgtctgc 6878846  T
Q  504 agaagcattgccgtaggctttgtctcaaatcttgtcttctccaaatgcctttccccatgccaccggactgtgtcatgcgccaccggagacagccattcca 603  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6878845 agaagcattgccgtaggctttgtctcgaatcttgtcttctccaaatgcctttccccatgccaccggactgtgtcatgcgccaccggagacagccattcca 6878746  T
Q  604 ttagctcctccaccgcctcccgccacccttcggccagtgagtgcccgtcatttccttcgtctccctctttcgcccaccgtcccctttgcttc 695  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6878745 ttagctcctccaccgcctcccgccacccttcggccagtgagtgcccgtcatttccttcgtctccctctttcgcccaccgtccccttagcttc 6878654  T

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