View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14275_high_30 (Length: 399)
Name: NF14275_high_30
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 7e-99; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 21 - 211
Target Start/End: Original strand, 26276985 - 26277175
Alignment:
| Q |
21 |
tagggcaacaaatttctcatgaagagctctaagatatagaaaagatatagaagcttcatttattagtttgtagttgatttattcatattgaagagattaa |
120 |
Q |
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| T |
26276985 |
tagggcaacaaatttctcatgaagagctctaagatatagaaaagatatagaagcttcatttattagtttgtagttgatttattcatattgaagagattaa |
26277084 |
T |
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| Q |
121 |
tttcttctactcactcacattgtaaaactttttccaactacatgtgcaataaagttttacatattgaatgcaaattaaattttataattaa |
211 |
Q |
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| T |
26277085 |
tttcttctactcactcacattgtaaaactttttccaactacatgtgcaataaagttttacatgttgaatgcaaattaaattttatatttaa |
26277175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 208 - 350
Target Start/End: Original strand, 26277365 - 26277507
Alignment:
| Q |
208 |
ttaattgttgggtaaaataaatcaaacatcattagaagaattaaaaaagttacaagaattaaaaagttatagtcacgcaacgtaactcatatggtaaaac |
307 |
Q |
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| T |
26277365 |
ttaattgttgggtaaaataaatcaaacatcattagaagaattaaaaaagttacaagaattaaaaagttagagtcacgcaacgcaactcatatggtaaaac |
26277464 |
T |
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| Q |
308 |
attgtaagaacgtttgatatttagggtcaccactttttattct |
350 |
Q |
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| T |
26277465 |
attgtaagaacgtttgatatttagggtcaccactttttattct |
26277507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 26277594 - 26277641
Alignment:
| Q |
349 |
ctgtttatgaagaaaaagagagccttctttttctatttatttattcat |
396 |
Q |
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| T |
26277594 |
ctgtttatgaagaaaaagagagccttctttttcgatttatttattcat |
26277641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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