View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14275_high_31 (Length: 389)
Name: NF14275_high_31
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_high_31 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 4566803 - 4566432
Alignment:
| Q |
1 |
gaaactaatgcatgaaactcgaacctgccacatgttgggaaagagatacaatccataagcgtatttgaatccgattcaaaaattactctatgtcaatctt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4566803 |
gaaactaatgcatgaaactcgaacctgccacatgttgggaaagagatacaatccataagcgtatttgaatccgattcaaaaattactctatgtcaatctt |
4566704 |
T |
|
| Q |
101 |
tgtcaatggctaccagagtagcatgttgcatagcccaagtttcccctttgagaactgtcaaattcacaaccttccacgctaactgagcatgaacaaacgg |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4566703 |
tgtcaatggctaccagagtagcatgctgcatagcccaagtttcccctttgagaactgtcaaattcacaaccttccacgctgactgagcatgaacaaacgg |
4566604 |
T |
|
| Q |
201 |
ctcctcagaatttcggaaacaacaccctatggaataagcaccttcagtctggtgtactgccgtatcgacgttacatttcagccatccataacccgccaac |
300 |
Q |
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||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
4566603 |
ctccttagaatttcggaaacaacatcctatggaataagcacctccagtctggtgtactgccgtatcaacgttacatttcagccatccgtaacccgccaac |
4566504 |
T |
|
| Q |
301 |
tgttgttagaatgcaaagatagttgtaggatggctcaactcccacatagctgcacttgatttcattgctgcc |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4566503 |
tgttgttagaatgcaaagatagttgtaggatggctcaactcccacatagttgcacttgatttcattgctgcc |
4566432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 119 - 290
Target Start/End: Original strand, 8670887 - 8671057
Alignment:
| Q |
119 |
tagcatgttgcatagcccaagtttcccctttgagaactgtcaaattcacaaccttccacgctaactgagcatgaacaaacggctcctcagaatttcggaa |
218 |
Q |
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||||||| |||| |||||||| ||||| || |||||| ||||||||| |||| ||||| ||| ||||||||||||||||| || ||||| |||| ||||| |
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| T |
8670887 |
tagcatgctgcagagcccaagcttcccattcgagaaccgtcaaattcgcaactttccatgctgactgagcatgaacaaaccgc-cctcaaaattccggaa |
8670985 |
T |
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| Q |
219 |
acaacaccctatggaataagcaccttcagtctggtgtactgccgtatcgacgttacatttcagccatccata |
290 |
Q |
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|||||||| |||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
8670986 |
acaacaccatatggaataagcacctacattctggtgtactgccgtgtcgacgttacatttcagccatccata |
8671057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 8670324 - 8670430
Alignment:
| Q |
3 |
aactaatgcatgaaactcgaacctgccacatgttgggaaagagatacaatccataagcgtatttgaatccgattcaaaaattactctatgtcaatctttg |
102 |
Q |
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||||||||||||||||||| | || |||||||||||| ||||||||||||||| ||||||||||||||| ||| ||||| ||||||||||||| ||||| |
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| T |
8670324 |
aactaatgcatgaaactcggatctaccacatgttggggaagagatacaatccacaagcgtatttgaatctaattaaaaaactactctatgtcaacctttg |
8670423 |
T |
|
| Q |
103 |
tcaatgg |
109 |
Q |
| |
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||||||| |
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| T |
8670424 |
tcaatgg |
8670430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 165; Significance: 4e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 49525203 - 49525584
Alignment:
| Q |
1 |
gaaactaatgcatgaaactcgaacctgccacatgttgggaaagagatacaatccataagcgtatttgaatccgattcaaaaattactctatgtcaatctt |
100 |
Q |
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||||||||||||||||||||| | ||||||| ||||||| ||||||||||||||| |||| |||||||||| |||||||||||||||||||| ||| ||| |
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| T |
49525203 |
gaaactaatgcatgaaactcggatctgccacgtgttggggaagagatacaatccacaagcatatttgaatctgattcaaaaattactctatgccaacctt |
49525302 |
T |
|
| Q |
101 |
tgtcaatggctaccagagtagcatgttgcatagcccaagtttcccctttgagaactgtcaaattcacaaccttccacgctaactgagcatgaacaaacgg |
200 |
Q |
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||||||||||||| || |||||||||||| |||||||| ||||||||||||||| || |||||| || ||||||| || ||||||||||||||||| | |
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| T |
49525303 |
cgtcaatggctacctgaatagcatgttgcagagcccaagcttcccctttgagaaccgttaaattcgcatccttccatgcggactgagcatgaacaaaccg |
49525402 |
T |
|
| Q |
201 |
ctcctcagaatttcggaaacaacaccctatggaataagcaccttcagtctggtgtactgccgtatcgacgttacatttcagccatccataacccg----- |
295 |
Q |
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| |||||||||| |||||||||||| | ||||||||| |||| || |||||||||||||| | ||||||||||||||||||||| ||||||| |
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| T |
49525403 |
cccctcagaattctggaaacaacaccttgtggaataagtacctccaacatggtgtactgccgtgttgacgttacatttcagccatccgtaacccggcggt |
49525502 |
T |
|
| Q |
296 |
--ccaactgttgttagaatgcaaag--atagttgtaggatggctcaactcccacatag-ctgcacttgatttcattgctgcc |
372 |
Q |
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|||||| |||||||| ||||||| ||||||||||||| |||| |||||| || || || ||||||||| |||||||||| |
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| T |
49525503 |
tcccaactattgttagattgcaaaggcatagttgtaggattgctcgactcccgcacagtcttcacttgattccattgctgcc |
49525584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 13299 - 13092
Alignment:
| Q |
1 |
gaaactaatgcatgaaactcgaacctgccacatgttgggaaagagatacaatccataagcgtatttgaatccgattcaaaaattactctatgtcaatctt |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||| ||||||||||||||| ||| ||||||||||| |||||||||| ||||||||| |||| || |
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| T |
13299 |
gaaactaatgcatgaaactcagacctgccatgtgttggggaagagatacaatccacaagtgtatttgaatctgattcaaaaagtactctatgccaatttt |
13200 |
T |
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| Q |
101 |
tgtcaatggctaccagagtagcatgttgcatagcccaagtttcccctttgagaactgtcaaattcacaaccttccacgctaactgagcatgaacaaacgg |
200 |
Q |
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|||||||||||||| | |||||||||||| |||||||| |||| ||| |||||||||||||||| |||||||||||||| ||||| ||||||||||| | |
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| T |
13199 |
tgtcaatggctaccttaatagcatgttgcagagcccaagcttccgcttcgagaactgtcaaattcgcaaccttccacgctgactgaacatgaacaaaccg |
13100 |
T |
|
| Q |
201 |
ctcctcag |
208 |
Q |
| |
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| |||||| |
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| T |
13099 |
cccctcag |
13092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 77 - 286
Target Start/End: Complemental strand, 33582820 - 33582608
Alignment:
| Q |
77 |
caaaaattactctatgtcaatctttgtcaatggctaccagagtagcatgttgcatagcccaagtttcccctttgagaa---ctgtcaaattcacaacctt |
173 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||| || ||||||| ||||||||||||| ||||||| |||| ||||||||||| ||||||| |
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| T |
33582820 |
caaaaattactctatgccactctttgtcaatggctacctgaatagcatgctgcatagcccaagcttcccctccaagaagaactgtcaaattcgcaacctt |
33582721 |
T |
|
| Q |
174 |
ccacgctaactgagcatgaacaaacggctcctcagaatttcggaaacaacaccctatggaataagcaccttcagtctggtgtactgccgtatcgacgtta |
273 |
Q |
| |
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||||||| | ||||||||||||||| | ||||||||||||| |||||||||||||||||||||||| || |||||| ||||||||| || ||||||||| |
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| T |
33582720 |
ccacgctgattgagcatgaacaaaccgaccctcagaatttcgaaaacaacaccctatggaataagcaactccagtcttgtgtactgcggtgtcgacgtta |
33582621 |
T |
|
| Q |
274 |
catttcagccatc |
286 |
Q |
| |
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||||||||||||| |
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| T |
33582620 |
catttcagccatc |
33582608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 32399410 - 32399464
Alignment:
| Q |
1 |
gaaactaatgcatgaaactcgaacctgccacatgttgggaaagagatacaatcca |
55 |
Q |
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||||||||||||||||| || || ||||| ||||||||||||||||||||||| |
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| T |
32399410 |
gaaactaatgcatgaaattcagacttgccatgtgttgggaaagagatacaatcca |
32399464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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