View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14275_high_37 (Length: 347)

Name: NF14275_high_37
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14275_high_37
NF14275_high_37
[»] chr2 (4 HSPs)
chr2 (1-333)||(14742280-14742612)
chr2 (62-256)||(14735980-14736164)
chr2 (3-64)||(14735813-14735874)
chr2 (103-216)||(14997031-14997140)
[»] chr1 (1 HSPs)
chr1 (275-316)||(36604777-36604818)
[»] chr6 (1 HSPs)
chr6 (229-261)||(14873001-14873033)
[»] chr5 (1 HSPs)
chr5 (233-261)||(36762781-36762809)
[»] chr3 (2 HSPs)
chr3 (229-261)||(37183064-37183096)
chr3 (229-261)||(41864963-41864995)


Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-172; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 14742280 - 14742612
Alignment:
Q  1 cttttgcttccttctcaagctgcactcaacacatgacacaaaatatgttcaaaattaataacatatcagcaaatttattcttgacaaagataatcacttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14742280 cttttgcttccttctcaagctgcactcaacacatgacacaaaatatgttcaaaattagtaacatatcagcaaatttattcttgacaaagataatcacttg 14742379  T
Q  101 aaagaaattagaatacaatttgtaaaaacaaacaaatgagatattgtataagaaggaaacaggatgttccttcattcctatatgcatcataattgctaga 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14742380 aaagaaactagaatacaatttgtaaaaacaaacaaatgagatattgtataagaaggaaacaggatgttccttcattcctatatgcatcataattgttaga 14742479  T
Q  201 ttggataacaagattaattaaaatatgataaaaattaaagagtaaattacactcccctccctccccttttaaatttatgttaaaatatacacttccctcc 300  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14742480 ttggataacaagattaattaaaatatgataacaattaaagagtaaattacactcccctccctccccttttaaatttatgttaacatatacacttccctcc 14742579  T
Q  301 ttctaaaagtgaaattaattcccttctcctatg 333  Q
     | ||||||||||||||||||||||||||||||    
T  14742580 ctttaaaagtgaaattaattcccttctcctatg 14742612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 62 - 256
Target Start/End: Original strand, 14735980 - 14736164
Alignment:
Q  62 catatcagcaaatttattcttgacaaagataatcacttgaaagaaattagaatacaatttgtaaaaacaaacaaatgagatattgtataagaaggaaaca 161  Q
    |||| ||||||||||||||||||||||||||||| ||||| | ||||||| |          ||||||||||||||||||||| ||||||||||||||||    
T  14735980 catagcagcaaatttattcttgacaaagataatcccttgacataaattagta----------aaaaacaaacaaatgagatatcgtataagaaggaaaca 14736069  T
Q  162 ggatgttccttcattcctatatgcatcataattgctagattggataacaagattaattaaaatatgataaaaattaaagagtaaattacactccc 256  Q
     ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  14736070 agatgttccttcattcctctatgcatcagaattgctagattggataacaagattaattaaaatatgataaaaataaaagattaaattacactccc 14736164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 14735813 - 14735874
Alignment:
Q  3 tttgcttccttctcaagctgcactcaacacatgacacaaaatatgttcaaaattaataacat 64  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  14735813 tttgcttccttctcaagctgcactcaacacatgacacaaaaaatgttcaaatttaataacat 14735874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 216
Target Start/End: Complemental strand, 14997140 - 14997031
Alignment:
Q  103 agaaattagaatacaatttgtaaaaacaaacaaatgagatattgtataagaaggaaacaggatgttccttcattcctatatgcatcataattgctagatt 202  Q
    |||||||||||| ||||| || ||  ||| |||||||||||||  | |||||||||| | ||||||  ||||||| | | || |||| || |||||||||    
T  14997140 agaaattagaatgcaattagtgaa--caagcaaatgagatatt--acaagaaggaaaaatgatgttgattcattcatctttggatcacaaatgctagatt 14997045  T
Q  203 ggataacaagatta 216  Q
    ||||||||||||||    
T  14997044 ggataacaagatta 14997031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 316
Target Start/End: Original strand, 36604777 - 36604818
Alignment:
Q  275 ttatgttaaaatatacacttccctccttctaaaagtgaaatt 316  Q
    ||||||||||||||||||||||||||||  |||||| |||||    
T  36604777 ttatgttaaaatatacacttccctcctttgaaaagtaaaatt 36604818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 261
Target Start/End: Original strand, 14873001 - 14873033
Alignment:
Q  229 taaaaattaaagagtaaattacactcccctccc 261  Q
    |||||| ||||||||||||||||||||||||||    
T  14873001 taaaaaataaagagtaaattacactcccctccc 14873033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 261
Target Start/End: Complemental strand, 36762809 - 36762781
Alignment:
Q  233 aattaaagagtaaattacactcccctccc 261  Q
    |||||||||||||||||||||||||||||    
T  36762809 aattaaagagtaaattacactcccctccc 36762781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 261
Target Start/End: Original strand, 37183064 - 37183096
Alignment:
Q  229 taaaaattaaagagtaaattacactcccctccc 261  Q
    |||||||| ||||||||||||||||||||||||    
T  37183064 taaaaattgaagagtaaattacactcccctccc 37183096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 261
Target Start/End: Original strand, 41864963 - 41864995
Alignment:
Q  229 taaaaattaaagagtaaattacactcccctccc 261  Q
    ||||||| |||||||||||||||||||||||||    
T  41864963 taaaaataaaagagtaaattacactcccctccc 41864995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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