View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14275_high_38 (Length: 333)
Name: NF14275_high_38
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 7e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 167 - 317
Target Start/End: Complemental strand, 55245768 - 55245618
Alignment:
| Q |
167 |
aattacactatagcactacatggataactcttattcaaaaacataccctagtaattgtgaggagctggctaattcaagcttgaagaagaggttcctcaag |
266 |
Q |
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| T |
55245768 |
aattacactatagcactacatggataactcttattcaaaaacataccctagtaattgtgaggagctggctaattcaagcttgaagaagaggttcctcaag |
55245669 |
T |
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| Q |
267 |
agagctaaagaagagaggtccaggctctacatactaaagaggtgcattatt |
317 |
Q |
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| T |
55245668 |
agagctaaagaagagaggtccaggctctacatactaaagaggtgcattatt |
55245618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 55245922 - 55245833
Alignment:
| Q |
9 |
gagcacagacacagagtatgagtcagatcgtaccaaggaccacaatgctagctactcgacactgttgcccatacataccccaattactac |
98 |
Q |
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| T |
55245922 |
gagcccagacacagagtatgagtcagatcgtaccaaggaccacaatgctagctactcgacactgttgcccatacataccccaattactac |
55245833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 317
Target Start/End: Complemental strand, 8270071 - 8269993
Alignment:
| Q |
239 |
ttcaagcttgaagaagaggttcctcaagagagctaaagaagagaggtccaggctctacatactaaagaggtgcattatt |
317 |
Q |
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| T |
8270071 |
ttcaagcttgaagaagaggttccttaacaaggcaaaggaacagaggtctaggctctatatattaaagaggtgcattatt |
8269993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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