View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14275_high_4 (Length: 679)
Name: NF14275_high_4
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_high_4 |
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| [»] scaffold0024 (3 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 435; Significance: 0; HSPs: 3)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 92 - 661
Target Start/End: Complemental strand, 80271 - 79703
Alignment:
| Q |
92 |
atcatattatatgtgttttcttccaagatattattaaatgtgaataatgcaaatcatgtgatctttttggcccacagtagaagagcattcatttctgttt |
191 |
Q |
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| T |
80271 |
atcatattatatgtgttttcttccaatatattattaaatgtgattaatgcaaatcatgtgacctttttggcccacactagaagagcattcatttctgttt |
80172 |
T |
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| Q |
192 |
cgaatttttgcctatgaatattaattagtgtatannnnnnncctagctgaagtgttaagcacgacaaggttttaggtttgactcg---------gtcaaa |
282 |
Q |
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| T |
80171 |
cgaatttttgcctacgaatattaattagtgtatatttttttcctagctgaagtgttaagcgctacaaggttttaggtttgactcgagtgaatatgtcaaa |
80072 |
T |
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| Q |
283 |
tttaacaattttgacattatcaattttgtaatgttatgattagccaaatgatataattttgatgaaattgaacaaactatattatttttccacaaatgta |
382 |
Q |
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| T |
80071 |
cttaacaattttgacattatcaattttgtaatgttatgattagccaaatgatataattttgatgtaattgaacaaactatattatttttccacaaatgta |
79972 |
T |
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| Q |
383 |
tgtgcatgttgaaaaacccttttaacaaaaatgtttatgtttgaatgtgtctcattatttaaaccaattaatttttcctattattagcaaaaattgaaaa |
482 |
Q |
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| T |
79971 |
tgtgcatgtt----------tttaacaaaaatgtttatgtttgaatgtgtctcattatttagaccaattaattttttctattattagcaaaaattgaaaa |
79882 |
T |
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| Q |
483 |
actaatcatgaactacttgattgaatagatcatggaccaattcgatggagagaaaaaatggaagaaagttgaagttgacttgaaacaacatattaaagtt |
582 |
Q |
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| T |
79881 |
actaatcatgaactacttgattgaatagatcatggaccaattcgatggagagaaaaaatggaagaaagttgaagttaacttggaagaacatattaaagtt |
79782 |
T |
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| Q |
583 |
cctgaatttccaagtgacaaatcatccaactcattctatgatgaacatcttgatgattatatgtccaaaatagcaatgg |
661 |
Q |
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| T |
79781 |
cctgaatttccaagtgacaaatcatccaactcattctatgatgaacatcttgatgattatatgtccaaaatagcaatgg |
79703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 80322 - 80257
Alignment:
| Q |
9 |
gagagagaagaataattaaaactgataggcacgttttcttaaggagtcattatcatattatatgtg |
74 |
Q |
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| T |
80322 |
gagagaaaagaataattaaaattgataggtacgttttcttaaggagtcattatcatattatatgtg |
80257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 617 - 661
Target Start/End: Complemental strand, 72683 - 72639
Alignment:
| Q |
617 |
tctatgatgaacatcttgatgattatatgtccaaaatagcaatgg |
661 |
Q |
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| T |
72683 |
tctatgatgaatatcttgatgattatatgtcaaaaatagcaatgg |
72639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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