View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14275_high_40 (Length: 325)

Name: NF14275_high_40
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14275_high_40
NF14275_high_40
[»] chr2 (1 HSPs)
chr2 (1-320)||(4243534-4243853)
[»] chr5 (1 HSPs)
chr5 (1-311)||(33495732-33496042)


Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 4243534 - 4243853
Alignment:
Q  1 catgattctgcccacaataattcttcatggatgaatatctggtatctcaatattcctcaccgtgtccgagcctttctatggcgtttagctcatcattgct 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4243534 catgattctgcccacaataattcttcatggatgaatatctggaatctcaatattcctcaccgtgtccgagcctttctatggcgtttagctcataattgct 4243633  T
Q  101 tgcccactcgtgtcaatcttaatgcaagaggaattcagtgcgaggaatcatgtgttatgtgtgaaaattttgcggaatgccacactcatctcttctttgt 200  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4243634 tgcccactcgtgtcaatcttaatgcaagaggaatccagtgcgaggaatcatgtgttatgtttgaaaattttgcggaatgccacactcatctcttctttgt 4243733  T
Q  201 ttgcgcaaaagccatggattgttggaagaatattggcttacatgttgtgttaagtgagctgctgcctcttgctaacaactttactacattgttgtttgac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4243734 ttgcgcaaaagccatggattgttggaagaatattggcttacatgttgtgttaagtgagctgctgcctcttgctaacaactttactacattgttgtttgac 4243833  T
Q  301 tttatgcacaggttctgctc 320  Q
    ||||||||||| || |||||    
T  4243834 tttatgcacagattatgctc 4243853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 33496042 - 33495732
Alignment:
Q  1 catgattctgcccacaataattcttcatggatgaatatctggtatctcaatattcctcaccgtgtccgagcctttctatggcgtttagctcatcattgct 100  Q
    ||||||||||||||||||||||||   |||||||||||||||  |||| |||||||||||||||| ||||||||| | |||| |||||||||||||| ||    
T  33496042 catgattctgcccacaataattctctttggatgaatatctggactctcgatattcctcaccgtgttcgagcctttatgtggcatttagctcatcatttct 33495943  T
Q  101 tgcccactcgtgtcaatcttaatgcaagaggaattcagtgcgaggaatcatgtgttatgtgtgaaaattttgcggaatgccacactcatctcttctttgt 200  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||| | |||||||||||||    
T  33495942 tgcccacccgtgtcaatcttaatgtaagaggaattcagtgcgaggaatcatgcgttatgtgtgaaacttttgcggaatcccacattaatctcttctttgt 33495843  T
Q  201 ttgcgcaaaagccatggattgttggaagaatattggcttacatgttgtgttaagtgagctgctgcctcttgctaacaactttactacattgttgtttgac 300  Q
    ||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  33495842 ttgtgcaaaagccatggattgttggaagaatattggcttatatgatgtgttaagtgagcttctccctcttgctaacaactttactacattgttgtttgac 33495743  T
Q  301 tttatgcacag 311  Q
    |||| ||||||    
T  33495742 tttacgcacag 33495732  T

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