View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14275_high_43 (Length: 314)
Name: NF14275_high_43
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_high_43 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 8 - 314
Target Start/End: Complemental strand, 25869502 - 25869195
Alignment:
| Q |
8 |
tccatattgataagcttgataaggataccatgattcattctccatgagtcagagaatggtattcatggcattttcctgaactaaagaagattgtaaagta |
107 |
Q |
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| T |
25869502 |
tccatattgataatcttgataaggataccatgattcattctccatgagtcagagaatggtattcatggcattttcctgaactaaagaagattgtaaagta |
25869403 |
T |
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| Q |
108 |
tgataattttttgttttgcgaagttgctaactttattgaggataataactcatcgcagttgtcgtccaaagtcaagatcaaatgcttaactaacatatta |
207 |
Q |
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| T |
25869402 |
tgataattatttgttttgcgaagttgctaactttattgaagataataactcatcgcagttgttgtccaaagtcaagatcaaatgcttaaataacatatta |
25869303 |
T |
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| Q |
208 |
tcttcatgattggggatgaagataa-aaaatgagattgtagaagctgctaaatcttctactctactgcacatgacttgtctcgtgtagagttgatcaatg |
306 |
Q |
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| T |
25869302 |
acttcatgattggagatgaagataaaaaaatgagattgtagaagctgctaaatcttctactctactgcacatgacttgtctagtgtagagttgatcaatg |
25869203 |
T |
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| Q |
307 |
tcgatcag |
314 |
Q |
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| T |
25869202 |
tcgatcag |
25869195 |
T |
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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 57 - 152
Target Start/End: Original strand, 42933435 - 42933527
Alignment:
| Q |
57 |
cagagaatggtattcatggcattttcctgaactaaagaagattgtaaagtatgataattttttgttttgcgaagttgctaactttattgaggataa |
152 |
Q |
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| T |
42933435 |
cagagagtggtattcatggcattttcctgaacttgtgaagattgtaa---atgataattatttgtactgcaaagttgcaaaatttattgaggataa |
42933527 |
T |
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