View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14275_high_50 (Length: 282)
Name: NF14275_high_50
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_high_50 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 3303868 - 3303598
Alignment:
| Q |
1 |
gtttacagaaatgataaagaagttttgcaaggacaagaatgatcctattccaaagggtctgcataagatagattacgaaacgttgattattcaaggaaga |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| || |||| ||||||||||||| |||| |
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| T |
3303868 |
gtttacagaaatgataaagaagttgtgcaaggacaagaatgatcctattccaaagggtctgcagaagatggatgacaaaacattgattattcaagtaaga |
3303769 |
T |
|
| Q |
101 |
caatacctcgaatccaaaaggtacttggttttatttgatgatgtctggaatgaagcattttctgatgaaattgaacatgccttaattagtaataacaaag |
200 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||| ||||| ||| |||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
3303768 |
caatacctcgaaacaaaaaggtacttggttttatttgatgatgtttggaaagaaaaattttctgatgagattaaacatgccttaattagtaataacaaag |
3303669 |
T |
|
| Q |
201 |
gaagtagaatcattgtgaccactagaaatatgaaagttgcccaatgttttacgaaagattttcctgttcat |
271 |
Q |
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| T |
3303668 |
gaagtagaatcatcgtgaccactagaaatatgaaagtagcagaatattttacgaaagattttcctgttcat |
3303598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 45 - 271
Target Start/End: Complemental strand, 3357245 - 3357019
Alignment:
| Q |
45 |
ctattccaaagggtctgcataagatagattacgaaacgttgattattcaaggaagacaatacctcgaatccaaaaggtacttggttttatttgatgatgt |
144 |
Q |
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|||||||||||||||||| ||||| ||| || ||| ||||||| ||||| |||||||||||| || || ||||||||||||||||||||||||||||| |
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| T |
3357245 |
ctattccaaagggtctgcggaagatggatgacagaacattgattactcaagtaagacaataccttgagtcaaaaaggtacttggttttatttgatgatgt |
3357146 |
T |
|
| Q |
145 |
ctggaatgaagcattttctgatgaaattgaacatgccttaattagtaataacaaaggaagtagaatcattgtgaccactagaaatatgaaagttgcccaa |
244 |
Q |
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||| | ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || || |
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| T |
3357145 |
ttgggaagaaaatttttctgatgagattgaacatgccttaattagtaataacaaaggaagtagaatcatcgtgaccactagaaatatgaaagtagcagaa |
3357046 |
T |
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| Q |
245 |
tgttttacgaaagattttcctgttcat |
271 |
Q |
| |
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| ||||| |||| ||||||||||||| |
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| T |
3357045 |
tattttaagaaatcttttcctgttcat |
3357019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 45 - 271
Target Start/End: Original strand, 3721803 - 3722029
Alignment:
| Q |
45 |
ctattccaaagggtctgcataagatagattacgaaacgttgattattcaaggaagacaatacctcgaatccaaaaggtacttggttttatttgatgatgt |
144 |
Q |
| |
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|||||||||||||||||| ||||| ||| || |||| ||||||| || || ||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
3721803 |
ctattccaaagggtctgcggaagatggatgacaaaacattgattactcgagtaagacaatacctcgagtcaaaaaggtacttggttttatttgatgatgt |
3721902 |
T |
|
| Q |
145 |
ctggaatgaagcattttctgatgaaattgaacatgccttaattagtaataacaaaggaagtagaatcattgtgaccactagaaatatgaaagttgcccaa |
244 |
Q |
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||| | ||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||| || || || |
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| T |
3721903 |
ttgggaagaaaacttttctgatgagattgaacatgccttaattagtaataacgaaggaagtagaatcatcgtgaccactagaaaaatgaacgtagcagaa |
3722002 |
T |
|
| Q |
245 |
tgttttacgaaagattttcctgttcat |
271 |
Q |
| |
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| ||||| |||| ||||||||||||| |
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| T |
3722003 |
tattttaagaaatcttttcctgttcat |
3722029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 5 - 271
Target Start/End: Complemental strand, 3322139 - 3321873
Alignment:
| Q |
5 |
acagaaatgataaagaagttttgcaaggacaagaatgatcctattccaaagggtctgcataagatagattacgaaacgttgattattcaaggaagacaat |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| | ||||||||||||| ||| ||||| ||| ||||| | || |||| ||||| |||| || |
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| T |
3322139 |
acagaaatgataaagaagttttgcaaggacaacgatgaacgtattccaaagggtttgctcaagatggatgacgaagcattcattaatcaagtgagacgat |
3322040 |
T |
|
| Q |
105 |
acctcgaatccaaaaggtacttggttttatttgatgatgtctggaatgaagcattttctgatgaaattgaacatgccttaattagtaataacaaaggaag |
204 |
Q |
| |
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|||| ||||| | ||||||||||| || ||||||||||| ||| | ||| |||||||||||| |||| |||||||||||||| ||||||| |||||| |
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| T |
3322039 |
accttgaatcaaggaggtacttggtgttttttgatgatgtttgggaagaaaaattttctgatgagattgcgcatgccttaattagcaataacacaggaag |
3321940 |
T |
|
| Q |
205 |
tagaatcattgtgaccactagaaatatgaaagttgcccaatgttttacgaaagattttcctgttcat |
271 |
Q |
| |
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||||||||| |||||||| ||||| ||| |||| || || |||||| |||| ||||| |||||||| |
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| T |
3321939 |
tagaatcatcgtgaccacaagaaacatgcaagtagcaaaaagttttaagaaatatttttctgttcat |
3321873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 119 - 234
Target Start/End: Complemental strand, 3310426 - 3310311
Alignment:
| Q |
119 |
aggtacttggttttatttgatgatgtctggaatgaagcattttctgatgaaattgaacatgccttaattagtaataacaaaggaagtagaatcattgtga |
218 |
Q |
| |
|
||||||||| |||| ||||||||||| ||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3310426 |
aggtacttgcttttgtttgatgatgtttggaaagaagcatttcctgatgaaattaaacatgccttaattagtaataacaaaggaagtagaatcatcatga |
3310327 |
T |
|
| Q |
219 |
ccactagaaatatgaa |
234 |
Q |
| |
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|||||||||| ||||| |
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| T |
3310326 |
ccactagaaaaatgaa |
3310311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 119 - 227
Target Start/End: Original strand, 3201277 - 3201385
Alignment:
| Q |
119 |
aggtacttggttttatttgatgatgtctggaatgaagcattttctgatgaaattgaacatgccttaattagtaataacaaaggaagtagaatcattgtga |
218 |
Q |
| |
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||||||||| |||| ||||||||||| ||||| ||| ||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3201277 |
aggtacttgcttttgtttgatgatgtttggaaagaaagtttttctgatgagattgaagatgccttaattagtaatgacaaaggaagtagaatcattgtga |
3201376 |
T |
|
| Q |
219 |
ccactagaa |
227 |
Q |
| |
|
||| ||||| |
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| T |
3201377 |
ccagtagaa |
3201385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 227
Target Start/End: Complemental strand, 3221380 - 3221168
Alignment:
| Q |
15 |
taaagaagttttgcaaggacaagaatgatcctattccaaagggtctgcataagatagattacgaaacgttgattattcaaggaagacaatacctcgaatc |
114 |
Q |
| |
|
||||||||||||||||||||| ||||| |||| |||||||||||||| |||| ||| || || |||||| ||||| ||| ||||||| ||||| |
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| T |
3221380 |
taaagaagttttgcaaggacagcaatgagcctacaccaaagggtctgcaggagatggatgacattacattgattgctcaagtgagagaataccttgaatc |
3221281 |
T |
|
| Q |
115 |
caaaaggtacttggttttatttgatgatgtctggaatgaagcattttctgatgaaattgaacatgccttaattagtaataacaaaggaagtagaatcatt |
214 |
Q |
| |
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||||||||||| || || ||||||||||| ||||| ||| |||| |||||| |||| | |||| | || |||||| ||||| |||||||||||| |
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| T |
3221280 |
aaaaaggtacttagtgttttttgatgatgtttggaaagaaattttttgtgatgagattgtaaatgctatgtctaataataagaaaggtagtagaatcatt |
3221181 |
T |
|
| Q |
215 |
gtgaccactagaa |
227 |
Q |
| |
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||||||||||||| |
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| T |
3221180 |
gtgaccactagaa |
3221168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 227
Target Start/End: Complemental strand, 3198174 - 3198050
Alignment:
| Q |
103 |
atacctcgaatccaaaaggtacttggttttatttgatgatgtctggaatgaagcattttctgatgaaattgaacatgccttaattagtaataacaaagga |
202 |
Q |
| |
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|||||| ||||| || ||||||||| | | ||||||||||| |||| |||| |||| |||| | || ||| ||||||| | ||||||||||| ||| |
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| T |
3198174 |
ataccttgaatcaaagaggtacttgatgtggtttgatgatgttcggaaagaagaatttgctgaagggatcgaatatgccttggtaagtaataacaacgga |
3198075 |
T |
|
| Q |
203 |
agtagaatcattgtgaccactagaa |
227 |
Q |
| |
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||||||||||||||||||||||||| |
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|
| T |
3198074 |
agtagaatcattgtgaccactagaa |
3198050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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