View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14275_high_52 (Length: 274)
Name: NF14275_high_52
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_high_52 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 27923022 - 27922762
Alignment:
| Q |
1 |
gaagggtgggcatggagggccaagaatttgttgtccccgtatatatccatctcattaggcaaaaagctcttattttgtttggttagcggcgcagtttgtt |
100 |
Q |
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| T |
27923022 |
gaagggagggcatggagggccaacattttgttgtccccgtatatatccatctcattaggcataaagctcttattttgtttggttagcggtgcagtttgtt |
27922923 |
T |
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| Q |
101 |
gcatgtttgcct--------gtataatttatgaacaataaaggaaatctctaattgcaatcaaaggttaaccattcaaaaaagtatacatgtatataatt |
192 |
Q |
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| T |
27922922 |
gcatgcttgcttctatttatgtataatttatgaacaataaaggaaatctctaattgcaatcaaaggttaaccattcaaaaaagtatacatgtatataatt |
27922823 |
T |
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| Q |
193 |
gcagagagtaatttcagcggataaatgagatatttttaaatcgacatccctcaatgtatat |
253 |
Q |
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| T |
27922822 |
gcagagactaatttcagcggataaatgagatatttttaaatcgacatccctcaatgtatat |
27922762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 27923172 - 27923099
Alignment:
| Q |
1 |
gaagggtgggcatggagggccaagaatttgttgtccccgtatatatccatctcattaggcaaaaagctcttatt |
74 |
Q |
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| T |
27923172 |
gaagggagggcatggagggccaagaatttgttgtccccgtatatatccatctcattaggcataaagctcttatt |
27923099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 27923097 - 27923024
Alignment:
| Q |
1 |
gaagggtgggcatggagggccaagaatttgttgtccccgtatatatccatctcattaggcaaaaagctcttatt |
74 |
Q |
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| T |
27923097 |
gaagggagggcatggagggccaacaatttgttgtccccgtatatatccatctcattaggcataaagctcttatt |
27923024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 74
Target Start/End: Complemental strand, 27923202 - 27923174
Alignment:
| Q |
46 |
tccatctcattaggcaaaaagctcttatt |
74 |
Q |
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| T |
27923202 |
tccatctcattaggcaaaaagctcttatt |
27923174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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