View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14275_high_60 (Length: 247)

Name: NF14275_high_60
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14275_high_60
NF14275_high_60
[»] chr7 (3 HSPs)
chr7 (121-200)||(39719166-39719245)
chr7 (8-37)||(34010127-34010156)
chr7 (193-230)||(39720268-39720305)
[»] chr1 (1 HSPs)
chr1 (1-54)||(12247264-12247317)
[»] chr8 (4 HSPs)
chr8 (1-54)||(24897815-24897868)
chr8 (1-54)||(25401362-25401415)
chr8 (1-54)||(25497542-25497595)
chr8 (8-37)||(27649518-27649547)


Alignment Details
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 121 - 200
Target Start/End: Original strand, 39719166 - 39719245
Alignment:
Q  121 gtttgtcaccatatttaccagtggtcacaatcggtgcaattgatttcatggctgctgttataacttgacggtctgacagc 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39719166 gtttgtcaccatatttaccggtggtcacaatcggtgcaattgatttcatggctgctgttataacttgacggtctgacagc 39719245  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 37
Target Start/End: Original strand, 34010127 - 34010156
Alignment:
Q  8 ttttattatcagtgttccaaaagttaaatt 37  Q
    ||||||||||||||||||||||||||||||    
T  34010127 ttttattatcagtgttccaaaagttaaatt 34010156  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 230
Target Start/End: Original strand, 39720268 - 39720305
Alignment:
Q  193 ctgacagcaccgcattcccccaatcattgtggacatct 230  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  39720268 ctgacagcaccgtattcccccaatcattgtgaacatct 39720305  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 12247264 - 12247317
Alignment:
Q  1 agcttatttttattatcagtgttccaaaagttaaattgtcttaacgaattcttc 54  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  12247264 agcttatttttattatcagtgtttcaaaagttaaattgtcttaatgaattcttc 12247317  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 24897868 - 24897815
Alignment:
Q  1 agcttatttttattatcagtgttccaaaagttaaattgtcttaacgaattcttc 54  Q
    ||||||||||||||||||||| |||||||||||||||  ||||| |||||||||    
T  24897868 agcttatttttattatcagtgatccaaaagttaaattaacttaatgaattcttc 24897815  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 25401362 - 25401415
Alignment:
Q  1 agcttatttttattatcagtgttccaaaagttaaattgtcttaacgaattcttc 54  Q
    |||||||||||||| ||||||||||||||||||||||  ||||| |||||||||    
T  25401362 agcttatttttattttcagtgttccaaaagttaaattaacttaatgaattcttc 25401415  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 25497542 - 25497595
Alignment:
Q  1 agcttatttttattatcagtgttccaaaagttaaattgtcttaacgaattcttc 54  Q
    |||||||||||||| ||||||||||||||||||||||  ||||| |||||||||    
T  25497542 agcttatttttattttcagtgttccaaaagttaaattaacttaatgaattcttc 25497595  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 37
Target Start/End: Original strand, 27649518 - 27649547
Alignment:
Q  8 ttttattatcagtgttccaaaagttaaatt 37  Q
    ||||||||||||||||||||||||||||||    
T  27649518 ttttattatcagtgttccaaaagttaaatt 27649547  T

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