View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14275_high_67 (Length: 215)
Name: NF14275_high_67
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_high_67 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 12 - 199
Target Start/End: Original strand, 48280151 - 48280340
Alignment:
| Q |
12 |
aagcataggatagagaaaaggaaacataaggattaggagaaagnnnnnnnnnn--aaggggattacgagaaagttgaagaggtaagtatacatgttttga |
109 |
Q |
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|||||||| ||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
48280151 |
aagcatagaatagagaaaaggaaacacaaggattaggagaaagttttttttttttaaggggattaggagaaagttgaagaggtaagtatacatgttttga |
48280250 |
T |
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| Q |
110 |
aataaactttggtgaagtatatatgtaaccaactttatttaagggttctgaaacgaaaagtgctaaagagattaattatgcatttggaat |
199 |
Q |
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| T |
48280251 |
aataaactttggtgaagtatacatgtaacaaacttcatttaagggttctgaaacaaaaagcgctaaagagattaattgtgcatttggaat |
48280340 |
T |
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Target: scaffold0039 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 65 - 199
Target Start/End: Original strand, 83816 - 83950
Alignment:
| Q |
65 |
aaggggattacgagaaagttgaagaggtaagtatacatgttttgaaataaactttggtgaagtatatatgtaaccaactttatttaagggttctgaaacg |
164 |
Q |
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| T |
83816 |
aaggggattaggagaaagttgaagaggtaagtatacatgttttgaaataaactttggtgaagtatatatgtaacaaacttcatttaagggttctaaaacg |
83915 |
T |
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| Q |
165 |
aaaagtgctaaagagattaattatgcatttggaat |
199 |
Q |
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| T |
83916 |
aaaagcgctaaagagattaattgtgcatttggaat |
83950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 109; Significance: 5e-55; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 12 - 199
Target Start/End: Original strand, 29634055 - 29634244
Alignment:
| Q |
12 |
aagcataggatagagaaaaggaaacataaggattaggagaaagnnnnnnnnnn--aaggggattacgagaaagttgaagaggtaagtatacatgttttga |
109 |
Q |
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| T |
29634055 |
aagcatagaatagagaaaaggaaacacaaggattaggagaaagtttttttttttgaaggggattaggagaaagttgaagaggtaagtatacatgttttga |
29634154 |
T |
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| Q |
110 |
aataaactttggtgaagtatatatgtaaccaactttatttaagggttctgaaacgaaaagtgctaaagagattaattatgcatttggaat |
199 |
Q |
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| T |
29634155 |
aataaactttgatgaagtatatatgtaacaaacttcatttaagggttctgaaatgaaaagcgctaaagagattaattgtgcattttgaat |
29634244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 69 - 199
Target Start/End: Original strand, 40390019 - 40390149
Alignment:
| Q |
69 |
ggattacgagaaagttgaagaggtaagtatacatgttttgaaataaactttggtgaagtatatatgtaaccaactttatttaagggttctgaaacgaaaa |
168 |
Q |
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| T |
40390019 |
ggattaggagaaagttgaagaggtaagtatacatgatttgaaataaactttggtgaagtatatatgtaacaaacttcatttaagggttctgaaacgaaaa |
40390118 |
T |
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| Q |
169 |
gtgctaaagagattaattatgcatttggaat |
199 |
Q |
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| T |
40390119 |
gcgctaaagagattaattgtgcatttggaat |
40390149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 199
Target Start/End: Original strand, 23126371 - 23126479
Alignment:
| Q |
91 |
gtaagtatacatgttttgaaataaactttggtgaagtatatatgtaaccaactttatttaagggttctgaaacgaaaagtgctaaagagattaattatgc |
190 |
Q |
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||||| ||||||||| ||||||| |||||| |||||| |||| ||| ||| |||| | | |||||||| | |||||||||||||||||||| ||| |
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| T |
23126371 |
gtaagcatacatgttatgaaatacactttgatgaagtgattatgcaacatactctattctaagattctgaaatgctaagtgctaaagagattaattttgc |
23126470 |
T |
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| Q |
191 |
atttggaat |
199 |
Q |
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||||||||| |
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| T |
23126471 |
atttggaat |
23126479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 40389990 - 40390032
Alignment:
| Q |
12 |
aagcataggatagagaaaaggaaacataaggattaggagaaag |
54 |
Q |
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| T |
40389990 |
aagcataaaatagagaaaaggaaacacaaggattaggagaaag |
40390032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 24049566 - 24049469
Alignment:
| Q |
65 |
aaggggattacgagaaagttgaagaggtaagtatacatgttttgaaataaactttggtgaagtatatatgtaaccaactttatttaagggttctgaaa |
162 |
Q |
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|||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
24049566 |
aaggggattaggagaaagttgaaaaggtaagtataaatgttttgaaataaactttgatgaagtatatatgtaacaaactttatttaagggttatgaaa |
24049469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 24864257 - 24864224
Alignment:
| Q |
166 |
aaagtgctaaagagattaattatgcatttggaat |
199 |
Q |
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| T |
24864257 |
aaagtgctaaagagattaattgtgcatttggaat |
24864224 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 199
Target Start/End: Complemental strand, 18700995 - 18700887
Alignment:
| Q |
91 |
gtaagtatacatgttttgaaataaactttggtgaagtatatatgtaaccaactttatttaagggttctgaaacgaaaagtgctaaagagattaattatgc |
190 |
Q |
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||||| ||||||||| ||||||| |||||| |||||| |||| ||| ||| |||| | | |||||||| | |||||||||||||||||||| ||| |
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| T |
18700995 |
gtaagcatacatgttatgaaatacactttgatgaagtgattatgcaacagactctattctaagattctgaaatgctaagtgctaaagagattaattttgc |
18700896 |
T |
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| Q |
191 |
atttggaat |
199 |
Q |
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||||||||| |
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| T |
18700895 |
atttggaat |
18700887 |
T |
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