View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14275_high_68 (Length: 213)
Name: NF14275_high_68
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_high_68 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 4 - 197
Target Start/End: Complemental strand, 1227906 - 1227713
Alignment:
| Q |
4 |
atcttttcttgcatagctcatgttagcaacctattcatttcaacagagataaagttaaaaataaataatagtataattgatgtagaattgattttgatat |
103 |
Q |
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| T |
1227906 |
atcttttcttgcatagctcatgttagcaacctattcatttcaacagagataaagttaaaaataaataatagtataattgatgtaaaattgattttgatat |
1227807 |
T |
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| Q |
104 |
atttaaatatgttcgcgtataattgaatttacctcaaaaactgattataactcgaagacaaaatttaaagtttttgcttctacaattgattttt |
197 |
Q |
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| T |
1227806 |
atttaaatgtgttcgcgtataattgaatttacctcaaaaaccgattataactcgaagacaaaatttaaagtttttgcttctacaattgattttt |
1227713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 78 - 197
Target Start/End: Complemental strand, 41966442 - 41966323
Alignment:
| Q |
78 |
aattgatgtagaattgattttgatatatttaaatatgttcgcgtataattgaatttacctcaaaaactgattataactcgaagacaaaatttaaagtttt |
177 |
Q |
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| T |
41966442 |
aattgatgtagaattaattttgatatatttaaatatgtttgcgtataattgaatttacctcaagaactgattatagctcaaacacaaaatttaaagtttt |
41966343 |
T |
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| Q |
178 |
tgcttctacaattgattttt |
197 |
Q |
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| T |
41966342 |
tgcttcttcaattgaatttt |
41966323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 41966548 - 41966484
Alignment:
| Q |
1 |
taaatcttttcttgcatagctcatgttagcaacctat----tcatttcaacagagataaagttaa |
61 |
Q |
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| T |
41966548 |
taaatcttttcttgcatagctcaggttagcaacctatataataatttcaacagagataaagttaa |
41966484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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