View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14275_high_7 (Length: 604)

Name: NF14275_high_7
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14275_high_7
NF14275_high_7
[»] chr5 (1 HSPs)
chr5 (21-238)||(8860612-8860829)
[»] chr4 (2 HSPs)
chr4 (412-594)||(18344747-18344929)
chr4 (283-319)||(18344631-18344667)
[»] scaffold0002 (3 HSPs)
scaffold0002 (412-582)||(162415-162585)
scaffold0002 (465-535)||(279529-279599)
scaffold0002 (283-319)||(162666-162702)
[»] chr2 (1 HSPs)
chr2 (522-591)||(25074441-25074510)
[»] chr8 (1 HSPs)
chr8 (549-594)||(14262899-14262944)
[»] chr3 (1 HSPs)
chr3 (553-594)||(9195454-9195495)
[»] chr1 (1 HSPs)
chr1 (283-319)||(17971199-17971235)


Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 21 - 238
Target Start/End: Original strand, 8860612 - 8860829
Alignment:
Q  21 gggttaatatggattaatgagttggagcacaaaagttgtgttctagaggtttaatttcagccaagtcaatgacctggtgcatgcctaatagatccacatt 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8860612 gggttaatatggattaatgagttggagcacaaaagttgtgttctagaggtttaatttcagccaagtcaatgacctggtgcatgcctaatagatccacatt 8860711  T
Q  121 catcaactaagatttctttaacaacagcatgcttctaaatattgtgagatcagaattagattataacgtattcattaagaaataaaagttctaaatatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8860712 catcaactaagatttctttaacaacagcatgcttctaaatattgtgagatcagaattagattataacgtattcattaagaaataaaagttctaaatatga 8860811  T
Q  221 ttattttaccacaactta 238  Q
    ||||||||||||||||||    
T  8860812 ttattttaccacaactta 8860829  T

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Target: chr4 (Bit Score: 179; Significance: 3e-96; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 412 - 594
Target Start/End: Original strand, 18344747 - 18344929
Alignment:
Q  412 atcaatagatggaacgctaaaaataaggaaaagtaaattagtcgttgtttagaaatatccaaactttgattcctaataccccataaatagttcgaactgg 511  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18344747 atcaaaagatggaacgctaaaaataaggaaaagtaaattagtcgttgtttagaaatatccaaactttgattcctaataccccataaatagttcgaactgg 18344846  T
Q  512 ataggaacaataatcaattttagctcgaatggtttgtagaggaaccctaccttctctaatccattcgacacgtgcaatttctt 594  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18344847 ataggaacaataatcaattttagctcgaatggtttgtagaggaaccctaccttctctaatccattcgacacgtgcaatttctt 18344929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 283 - 319
Target Start/End: Complemental strand, 18344667 - 18344631
Alignment:
Q  283 ttttatagtgaaggagttgttatgcttagtgtgtgac 319  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  18344667 ttttatagtaaaggagttgctatgcttagtgtgtgac 18344631  T

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Target: scaffold0002 (Bit Score: 163; Significance: 9e-87; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 412 - 582
Target Start/End: Complemental strand, 162585 - 162415
Alignment:
Q  412 atcaatagatggaacgctaaaaataaggaaaagtaaattagtcgttgtttagaaatatccaaactttgattcctaataccccataaatagttcgaactgg 511  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  162585 atcaaaagaaggaacgctaaaaataaggaaaagtaaattagtcgttgtttagaaatatccaaactttgattcctaataccccataaatagttcgaactgg 162486  T
Q  512 ataggaacaataatcaattttagctcgaatggtttgtagaggaaccctaccttctctaatccattcgacac 582  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  162485 ataggaacaataatcaattttagctcgaatggtttgtagaggaaccctaccttctctaatccattcgacac 162415  T

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Target: scaffold0002; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 465 - 535
Target Start/End: Original strand, 279529 - 279599
Alignment:
Q  465 aatatccaaactttgattcctaataccccataaatagttcgaactggataggaacaataatcaattttagc 535  Q
    |||||||||| ||| |  |||||||| ||||| |||||||||| ||||||| | |||||||||||||||||    
T  279529 aatatccaaatttttacacctaatactccatagatagttcgaattggatagcagcaataatcaattttagc 279599  T

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Target: scaffold0002; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 283 - 319
Target Start/End: Original strand, 162666 - 162702
Alignment:
Q  283 ttttatagtgaaggagttgttatgcttagtgtgtgac 319  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  162666 ttttatagtaaaggagttgctatgcttagtgtgtgac 162702  T

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Target: chr2 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 522 - 591
Target Start/End: Original strand, 25074441 - 25074510
Alignment:
Q  522 taatcaattttagctcgaatggtttgtagaggaaccctaccttctctaatccattcgacacgtgcaattt 591  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25074441 taataaattttagctcgaatggtttgtagaggaaccctaccttctctaatccattcgacacgtgcaattt 25074510  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 549 - 594
Target Start/End: Original strand, 14262899 - 14262944
Alignment:
Q  549 agaggaaccctaccttctctaatccattcgacacgtgcaatttctt 594  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  14262899 agaggaaccctaccttctctaatccattcgacacatgcaatttctt 14262944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 553 - 594
Target Start/End: Original strand, 9195454 - 9195495
Alignment:
Q  553 gaaccctaccttctctaatccattcgacacgtgcaatttctt 594  Q
    ||||||||||||||||||||| || |||||||||||||||||    
T  9195454 gaaccctaccttctctaatccgtttgacacgtgcaatttctt 9195495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 283 - 319
Target Start/End: Original strand, 17971199 - 17971235
Alignment:
Q  283 ttttatagtgaaggagttgttatgcttagtgtgtgac 319  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  17971199 ttttatagtaaaggagttgctatgcttagtgtgtgac 17971235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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