View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14275_low_10 (Length: 591)
Name: NF14275_low_10
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 537; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 17 - 581
Target Start/End: Original strand, 14392952 - 14393515
Alignment:
| Q |
17 |
aaaggatggtggtatgtgtcagcaatatcaaaacagaaaagaaaattatacggatgctagctgatgatgaaggggaagaaagtcctcggaggacagtaaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14392952 |
aaaggatggtggtatgtgtcagcaatatcaaaacagaaaagaaaattatacggatgctagctgatgatgaaggggaagaaagtcctcggaggacagtaaa |
14393051 |
T |
|
| Q |
117 |
aatgcttttgaaaatgttgatgtttttggaagcgaatctacagatggtgaggagtgttctcgagaaaagcatagggatggagaacgtgatagtaaggctg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14393052 |
aatgcttttgaaaatgttgatgtttttggaagcgaatatacagatggtgaggagtgttctcgagaaaagcatagggatggagaacgtgatagtaaggctg |
14393151 |
T |
|
| Q |
217 |
aaagtgaaggtgaagctaaatgaatggctaatgcccctgttggaggagatggaatgtcattgccattttctgaatgatttttgctaagcttgaaaccatc |
316 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14393152 |
aaagtgaaggtgaagctaaatga-tggctaatgcccctgttgaaggagatggaatgtcattgccattttctgaatgatttttgctaagcttgaaaccatc |
14393250 |
T |
|
| Q |
317 |
ggcaaaacatgttcccccagattttggaagtgaagctgaaggtatatttcgacaattcactgtaattacaattctgtatgtttaactattttcttagtct |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14393251 |
ggcaaaacatgttcccccagattttggaagtgaagctgaaggtatatttcgacaattcattgtaattacaattctgtatgtttaactattttcttagtct |
14393350 |
T |
|
| Q |
417 |
tgatgttgatgttcttcatttacgatatcaattgtgtattaacatatatcaaggaacaaaagcatgtggatcattgaagagataatagtgttggacttaa |
516 |
Q |
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| T |
14393351 |
tgatgttgatgttcttcatttacgatatcaattgtgtattaacatatatcaaggaacaaaagtatgtggatcattgaagagataatagtgttggacttaa |
14393450 |
T |
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| Q |
517 |
gtcccacatcgctcaaaataaagatatgaagccaaaccctctaatataaaaatcaaactcctatg |
581 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14393451 |
gtcccacatcggtcaaaataaagatatgaagccaaaccctctaatataaaaatcaaactcctatg |
14393515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 481 - 578
Target Start/End: Original strand, 14396293 - 14396391
Alignment:
| Q |
481 |
tgtggatcattgaagagataatagtgttggacttaagtcccacatcgctcaaaataaagatatgaagc-caaaccctctaatataaaaatcaaactcct |
578 |
Q |
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| T |
14396293 |
tgtggatcattgaagagataatagtgttagacttatgccccacatcgctcaaaataaagacatgaagctaaaaccctctaatataaaaatcaaactcct |
14396391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 76 - 336
Target Start/End: Complemental strand, 16024693 - 16024420
Alignment:
| Q |
76 |
gctgatgatgaaggggaagaaagtcc----------tcggaggacagtaaaaatgcttttgaaaatgttgatgtttttggaagcgaatctacagatggtg |
165 |
Q |
| |
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|||||||||||||||||||||||||| || |||| |||| |||| |||| || ||| |||||||||| |||||| |||||| | ||||| | |
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| T |
16024693 |
gctgatgatgaaggggaagaaagtcctcagaggtcatcagagggcagtgaaaacgcttctggaaacgttgatgtttctggaagtgaatctgctgatggag |
16024594 |
T |
|
| Q |
166 |
aggagtgttctcgagaaaagcatagggatggagaacgtgatagtaaggctgaaagtgaaggtgaagctaaatgaatggctaatgccc---ctgttggagg |
262 |
Q |
| |
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||||||| |||| |||| ||||| |||||||||| |||| ||||||||||||||||||||||||| || |||||||| |||| | ||||| ||| |
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| T |
16024593 |
aggagtgctctcaagaagagcatgatgatggagaacatgatgataaggctgaaagtgaaggtgaagctgaaggaatggctgatgcacatgatgttgaagg |
16024494 |
T |
|
| Q |
263 |
agatggaatgtcattgccattttctgaatgatttttgctaagcttgaaaccatcggcaaaacatgttcccccag |
336 |
Q |
| |
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|||||||| ||||| |||||||||||| | ||| | |||| |||| |||| |||||| ||||||||||||| |
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| T |
16024493 |
agatggaacatcattaccattttctgaacgctttcttctaaatgtgaagccattggcaaagcatgttcccccag |
16024420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 127 - 289
Target Start/End: Original strand, 14391274 - 14391429
Alignment:
| Q |
127 |
aaaatgttgatgtttttggaagcgaatctacagatggtgaggagtgttctcgagaaaagcatagggatggagaacgtgatagtaaggctgaaagtgaagg |
226 |
Q |
| |
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|||||||| |||||| ||||| |||||||| ||||||||| |||||||||||||| |||| | |||||||||| ||||| |||||||||| |||||| |
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| T |
14391274 |
aaaatgtttatgtttctggaatcgaatctaatgatggtgagtagtgttctcgagaagagca-cgcgatggagaacatgataataaggctgaaggtgaagt |
14391372 |
T |
|
| Q |
227 |
tgaagctaaatgaatggctaatgcccctgttggaggagatggaatgtcattgccattttctga |
289 |
Q |
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||||| |||| ||| |||||| ||||| || ||||||||||||||||||||||||||| |
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| T |
14391373 |
tgaag------gaatagctgatgcccatgttgaagaagatggaatgtcattgccattttctga |
14391429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 102 - 278
Target Start/End: Original strand, 14397535 - 14397711
Alignment:
| Q |
102 |
tcggaggacagtaaaaatgcttttgaaaatgttgatgtttttggaagcgaatctacagatggtgaggagtgttctcgagaaaagcatagggatggagaac |
201 |
Q |
| |
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|||||||||| | |||||| || ||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||||| ||| ||||||||| |
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| T |
14397535 |
tcggaggacaatgaaaatggttctgaaaatgttgttgtttcaggaagtgaatctactaatggtgaggagtgttctcgagaagagcgcgacgatggagaat |
14397634 |
T |
|
| Q |
202 |
gtgatagtaaggctgaaagtgaaggtgaagctaaatgaatggctaatgcccctgttggaggagatggaatgtcattg |
278 |
Q |
| |
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||||| ||||||| || |||||||||| ||| || |||||||| ||||| ||||| |||||||| ||||| |||| |
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| T |
14397635 |
atgataataaggctcaaggtgaaggtgaggctgaaggaatggctgatgccggtgttgaaggagatgaaatgtaattg |
14397711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 13883984 - 13883931
Alignment:
| Q |
102 |
tcggaggacagtaaaaatgcttttgaaaatgttgatgtttttggaagcgaatct |
155 |
Q |
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| T |
13883984 |
tcggaggatagttaaaatgcttctgaaaatgttgatgtttctggaagcgaatct |
13883931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 191 - 287
Target Start/End: Complemental strand, 13882108 - 13882008
Alignment:
| Q |
191 |
ggatggagaacgtgatagtaaggctgaaagtgaaggtgaagctaaatg--aatggctaatgcccct---gttggaggagatggaatgtcattgccatttt |
285 |
Q |
| |
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||||| ||||| ||||| ||||||||||||||||||||||||| ||| ||||| |||||| | | |||| ||||||||||| |||||||||||||| |
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| T |
13882108 |
ggatgcagaacatgataataaggctgaaagtgaaggtgaagct-gatgaaaatggataatgcgcatgaagttgaaggagatggaacgtcattgccatttt |
13882010 |
T |
|
| Q |
286 |
ct |
287 |
Q |
| |
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|| |
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| T |
13882009 |
ct |
13882008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 420
Target Start/End: Complemental strand, 14358345 - 14358302
Alignment:
| Q |
377 |
tgtaattacaattctgtatgtttaactattttcttagtcttgat |
420 |
Q |
| |
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||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
14358345 |
tgtaattacaattctgtatgtttaaatatttctttagtcttgat |
14358302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 511 - 578
Target Start/End: Original strand, 14390339 - 14390406
Alignment:
| Q |
511 |
acttaagtcccacatcgctcaaaataaagatatgaagccaaaccctctaatataaaaatcaaactcct |
578 |
Q |
| |
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|||||| |||||||||||| ||| | |||| ||| |||||| ||||||||||||||||| ||||||| |
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| T |
14390339 |
acttaaatcccacatcgctgaaagtcaagacgtgaggccaaaacctctaatataaaaatcgaactcct |
14390406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 76 - 108
Target Start/End: Complemental strand, 13882211 - 13882179
Alignment:
| Q |
76 |
gctgatgatgaaggggaagaaagtcctcggagg |
108 |
Q |
| |
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|||||||||||||||||||||||||||| |||| |
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| T |
13882211 |
gctgatgatgaaggggaagaaagtcctcagagg |
13882179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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