View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14275_low_12 (Length: 538)
Name: NF14275_low_12
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 404
Target Start/End: Original strand, 25671641 - 25672027
Alignment:
| Q |
19 |
aactagtatttgtttgagatgaatcagnnnnnnnnnnnnnggttactatataatgaaatgaattaacatggagttgaaaagttgtatacttggtttgaat |
118 |
Q |
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| T |
25671641 |
aactagtatttgtttgagatgaatcagtttttgattttttggttactatataatgaaatgaattaacatggagttgaaaagttgtatacttggtttgaat |
25671740 |
T |
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| Q |
119 |
atttggaagctacgtgtaaactgtcattgggttctcatagcaagttgtactagtatttaactaccaatctagaaagggaagnnnnnnnn-atcttaaact |
217 |
Q |
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| T |
25671741 |
atttggaagctacgtgtaaactgtcattgggttctcatagcaagttgtactagtatttaactaccaatctagaaagggaagtttttttttatcttaaact |
25671840 |
T |
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| Q |
218 |
tttgacttttcgttgagaatgatgggtttggtttaaaaataaaagtggaattaggattgtcatcaacttattaaagattgcaagattatttttgtataac |
317 |
Q |
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| T |
25671841 |
tttgacttttcgttgagaatgatgggtttggtttaaaaatacaagtggaattaggattgtcatcaacttattaaagattgcaagattatttttgtacatc |
25671940 |
T |
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| Q |
318 |
agtatcgattaggcatggcaattgtggcaaaattttatcctataaaactaacttgtaaaatgatgattactttactcaataatattg |
404 |
Q |
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| T |
25671941 |
agtatcgattaggcatggcaattgtggcaaaattttatcctataaaactgatttgtaagatgttgattactttactcaatattattg |
25672027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 405 - 535
Target Start/End: Original strand, 25672093 - 25672218
Alignment:
| Q |
405 |
gatcttgaagaagattttaatttcatcttagaaattgtcgttgatgctaacataactctgcaaaactgacttacgagacaaggattgtctccatttataa |
504 |
Q |
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| T |
25672093 |
gatcttgaagaagactttaattttatcttaaaaattgtcgttga-----acacaaccctacaaaactgacttatgagacaagtattgtctccacttgtaa |
25672187 |
T |
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| Q |
505 |
acacaagttcaaaccatattttcttcgacat |
535 |
Q |
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| T |
25672188 |
acacaagttcaaaccatattttattcgacat |
25672218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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