View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14275_low_13 (Length: 538)
Name: NF14275_low_13
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 39 - 523
Target Start/End: Original strand, 4724392 - 4724889
Alignment:
| Q |
39 |
catagattactacaatattttagaactcatgttgtatccttgcttagtacagtagtgtgtaaccttttgtctctaatccaggccttctacttggattacc |
138 |
Q |
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| T |
4724392 |
catagattactacaatattttagaactcatgttgtatccttgcttagtacagtattgtgtaaccttttgcctctaatccaggccttctgcttggattacc |
4724491 |
T |
|
| Q |
139 |
ggcagttaaaaaataaactatcatattaactaattactatatatatccaagattttaaattataaaatggccctaccactgcaaatttagccaaatctac |
238 |
Q |
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| T |
4724492 |
ggcagttaaaaaataaactatcatattaactaattactatatatatccaagattttaaattataaaatgaccctaccattgcaaatttagccaaatctac |
4724591 |
T |
|
| Q |
239 |
ccctaaactcttgcaatctataaaatattaacctatttcaa----------ctaatatcataattcaaaaccttaa----gttatacctctctattgtct |
324 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4724592 |
ccctaaactcttgcaatctataaaatatta-cctatttcaaagatacaaaactaatatcataattcaaaaccttaattaagttatacctctctattgtct |
4724690 |
T |
|
| Q |
325 |
ctctaacttgtttaatagagctgtgatcaaagcatctctattctcagccctagcttcttctctaatcctcctttgttcttccctttctctccatctttgt |
424 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4724691 |
ctctaacttgtttaatagagctgtgatcaaagcatctctcttctcagccctagcttcttctctaatcctcctttgttcttccctttctctccatctttgt |
4724790 |
T |
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| Q |
425 |
tccatcaatatcctctcattctcaagcatttccatttgttgtctccactccatctccctcaacctcctttcattctctctagcttcaaatgcttccatc |
523 |
Q |
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| T |
4724791 |
tccatcaatatcctctcattctcaagcatttccatttgttgtctccactccatctccctcaacctcctttcattctctctagcttcaaatgcttccatc |
4724889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 357 - 523
Target Start/End: Complemental strand, 25259613 - 25259447
Alignment:
| Q |
357 |
catctctattctcagccctagcttcttctctaatcctcctttgttcttccctttctctccatctttgttccatcaatatcctctcattctcaagcatttc |
456 |
Q |
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||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||| |
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| T |
25259613 |
catctcttttttcagccctagcttcttctctaatccttctttgttcttccctttctctccatctttgttccatcattatcctctcattctccaatgcttc |
25259514 |
T |
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| Q |
457 |
catttgttgtctccactccatctccctcaacctcctttcattctctctagcttcaaatgcttccatc |
523 |
Q |
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|||| ||||||||||||||||||| |||| ||||| ||||||||||| |||||||||||||||||| |
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| T |
25259513 |
cattctttgtctccactccatctccttcaatctcctctcattctctcttgcttcaaatgcttccatc |
25259447 |
T |
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