View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14275_low_14 (Length: 532)
Name: NF14275_low_14
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_low_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Complemental strand, 46847943 - 46847414
Alignment:
| Q |
1 |
tataatagatatgttattaattagtttgtgattggcctcttcnnnnnnnnnntagttttgtgattgaactctagacctctttcttcaactcaacaaaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46847943 |
tataatagatatgttattaattagtttgtgattggcctcttcaaaagaaaattagttttgtgattgaactctagacctctttcttcaactcaacaaaatg |
46847844 |
T |
|
| Q |
101 |
tataaattcgaccacttgagttgcacttagtagacaatttagtgtttgttttactattatattatcaacgagttataagttgttgcatcttcttcc-tgt |
199 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
46847843 |
tataaattcaaccacttgagttgcacttagtagacaatttagtgtttattttactattatattatcaacgagttataagttgttgcatcttctttcatgt |
46847744 |
T |
|
| Q |
200 |
attaatccggtaacacnnnnnnnn-gtcaatttatactcaatcggtcaaatgttgggttagtaatttgaaattcatacaacccgattagatataatagaa |
298 |
Q |
| |
|
|||||||||||||||| ||||| ||||| ||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
46847743 |
attaatccggtaacactttttttttgtcaacttataatcaataggttaaatgttgggttagtaatttgaaattcagccaacccgattagatataatagaa |
46847644 |
T |
|
| Q |
299 |
tttcaattaaaaatataggttttatttttataatattttgcggggactgtatataccttaattttaattactcttcgtaattactcttattttctgagtg |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46847643 |
tttcaattaaaaatataggttttatttttataatattttgcggggactgtatataccccaattttaattactcttcgtaattactcttattttctgagtg |
46847544 |
T |
|
| Q |
399 |
tggttgtttgtgcttgtgcttcacccttgtcttacgagaaaccatttttcacttttattttgtattgacaacatcgttgtactagttcatttgtctatgt |
498 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
|
|
| T |
46847543 |
tggttgtttgtgcttgtgcttcacccttgtcatacgagaaaccatttttcacttttattttgtattgacaacatcattgtactagttcatttgtctatct |
46847444 |
T |
|
| Q |
499 |
cctcactcacctcccttgtctctgctcctc |
528 |
Q |
| |
|
||||||||||||||||||||||| |||||| |
|
|
| T |
46847443 |
cctcactcacctcccttgtctcttctcctc |
46847414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University