View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14275_low_15 (Length: 506)
Name: NF14275_low_15
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_low_15 |
 | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0083 (Bit Score: 317; Significance: 1e-178; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 10 - 488
Target Start/End: Original strand, 54372 - 54847
Alignment:
| Q |
10 |
gtagcataggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggcagttttctggtaggaactgtggaacatacct |
109 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
54372 |
gtagcagaggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggc---tttctggtaggaactgtggaacatacct |
54468 |
T |
|
| Q |
110 |
gaaatgggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgttccttccttttatacc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54469 |
gaaatgggaacacaacttgtctatcatattgtgactttgtaatttattgatatgacagggatgtgagcaattttggaccaatgttccttccttttatacc |
54568 |
T |
|
| Q |
210 |
tttcttctaacaatggacatcgactgatctccagtctcttcagagagtcagggaggctgtcttctggtaatgactctagcttttcacatttccacaattc |
309 |
Q |
| |
|
|||||||||||||||| || | | ||| | |||| ||| ||||| ||||||||||||||||||||||||||||||||||||| ||| | | ||||| |
|
|
| T |
54569 |
tttcttctaacaatgggcaaccatcgatgtacagttccttaagagattcagggaggctgtcttctggtaatgactctagctttttacaatcataaaattc |
54668 |
T |
|
| Q |
310 |
aagtgatttcagcgaggaagggaggcagttttctgccaatgtctcaagttgatgacaattccaaaaacagagacgttggagagaggagaggtgtcggagc |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| | |||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
54669 |
aagtgatttcagcgaggaagggaggcagttttctggcaatgtctcaagttgttgacaaaacaaaaaacagagactttggagagaggagaggtgtcgcagc |
54768 |
T |
|
| Q |
410 |
ccatttccatcaaaggacttcatttcattgagatccttgatatctagttccacaagggagatgggtagcaacgactcct |
488 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||| ||| | ||||||||||||||||||||| ||||||| |
|
|
| T |
54769 |
ccatttccatcaaaggacttcatttcagagagatcacagatacgtagatgcacaagggagatgggtagcaatgactcct |
54847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 317; Significance: 1e-178; HSPs: 36)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 10 - 488
Target Start/End: Complemental strand, 9980765 - 9980290
Alignment:
| Q |
10 |
gtagcataggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggcagttttctggtaggaactgtggaacatacct |
109 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9980765 |
gtagcagaggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggc---tttctggtaggaactgtggaacatacct |
9980669 |
T |
|
| Q |
110 |
gaaatgggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgttccttccttttatacc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9980668 |
gaaatgggaacacaacttgtctatcatattgtgactttgtaatttattgatatgacagggatgtgagcaattttggaccaatgttccttccttttatacc |
9980569 |
T |
|
| Q |
210 |
tttcttctaacaatggacatcgactgatctccagtctcttcagagagtcagggaggctgtcttctggtaatgactctagcttttcacatttccacaattc |
309 |
Q |
| |
|
|||||||||||||||| || | | ||| | |||| ||| ||||| ||||||||||||||||||||||||||||||||||||| ||| | | ||||| |
|
|
| T |
9980568 |
tttcttctaacaatgggcaaccatcgatgtacagttccttaagagattcagggaggctgtcttctggtaatgactctagctttttacaatcataaaattc |
9980469 |
T |
|
| Q |
310 |
aagtgatttcagcgaggaagggaggcagttttctgccaatgtctcaagttgatgacaattccaaaaacagagacgttggagagaggagaggtgtcggagc |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| | |||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
9980468 |
aagtgatttcagcgaggaagggaggcagttttctggcaatgtctcaagttgttgacaaaacaaaaaacagagactttggagagaggagaggtgtcgcagc |
9980369 |
T |
|
| Q |
410 |
ccatttccatcaaaggacttcatttcattgagatccttgatatctagttccacaagggagatgggtagcaacgactcct |
488 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||| ||| | ||||||||||||||||||||| ||||||| |
|
|
| T |
9980368 |
ccatttccatcaaaggacttcatttcagagagatcacagatacgtagatgcacaagggagatgggtagcaatgactcct |
9980290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 10 - 488
Target Start/End: Complemental strand, 10035302 - 10034827
Alignment:
| Q |
10 |
gtagcataggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggcagttttctggtaggaactgtggaacatacct |
109 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10035302 |
gtagcagaggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggc---tttctggtaggaactgtggaacatacct |
10035206 |
T |
|
| Q |
110 |
gaaatgggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgttccttccttttatacc |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10035205 |
gaaatgggaacacaacttgtctatcatattgtgacttcatgatttatatctatgaaagggatgtgagcaattttggaccaatgttccttccttttatacc |
10035106 |
T |
|
| Q |
210 |
tttcttctaacaatggacatcgactgatctccagtctcttcagagagtcagggaggctgtcttctggtaatgactctagcttttcacatttccacaattc |
309 |
Q |
| |
|
|||||||||||||||| || | || ||| | | |||||||||| |||||||||||||||||||||||| ||||||| ||| | ||||||| |
|
|
| T |
10035105 |
tttcttctaacaatgggcaattccaaatgcagagttccctaagagagtcagtgaggctgtcttctggtaatgactcaagctttttacaatcccacaatct |
10035006 |
T |
|
| Q |
310 |
aagtgatttcagcgaggaagggaggcagttttctgccaatgtctcaagttgatgacaattccaaaaacagagacgttggagagaggagaggtgtcggagc |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
10035005 |
aagtgatttcagcgaggaagggaggcagttttctggcaatgtctcaagttgatgacaattccaaaaacagagagtttggagagaggagaggtgtcgaagc |
10034906 |
T |
|
| Q |
410 |
ccatttccatcaaaggacttcatttcattgagatccttgatatctagttccacaagggagatgggtagcaacgactcct |
488 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||| |||||| ||| | ||||||||||||||||||||| ||||||| |
|
|
| T |
10034905 |
ccatttccatcaaaggacttcatttcatcgaaatccctgatatatagatacacaagggagatgggtagcaatgactcct |
10034827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 58 - 488
Target Start/End: Complemental strand, 10520736 - 10520309
Alignment:
| Q |
58 |
tacagatgattgattattggcagttttctggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtgactttgtaatttatt |
157 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10520736 |
tacagaggattgattattggc---tttctggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtgacttggtaatttatt |
10520640 |
T |
|
| Q |
158 |
tgtatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacatcgactgatctccagtctcttcagagagt |
257 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||| |
|
|
| T |
10520639 |
gatatgactgggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacattcccaaatgagcagtctcttcagagagt |
10520540 |
T |
|
| Q |
258 |
cagggaggctgtcttctggtaatgactctagcttttcacatttccacaattcaagtgatttcagcgaggaagggaggcagttttctgccaatgtctcaag |
357 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10520539 |
cagggaggctgtcttctggtaatgatttaagcttttcacatttccacaaatcaagtaatttcagcgaggaagggaggcagttttctggcaatgtctcaag |
10520440 |
T |
|
| Q |
358 |
ttgatgacaattccaaaaacagagacgttggagagaggagaggtgtcggagcccatttccatcaaaggacttcatttcattgagatccttgatatctagt |
457 |
Q |
| |
|
||| | ||||| |||||||| |||||||||||||||||||||||| || ||||| |||||||||||||||||||||||| ||||||| ||||| ||| |
|
|
| T |
10520439 |
ttgttcacaatcccaaaaacggagacgttggagagaggagaggtgacgaagcccttttccatcaaaggacttcatttcagagagatccctgatagttaga |
10520340 |
T |
|
| Q |
458 |
tccacaagggagatgggtagcaacgactcct |
488 |
Q |
| |
|
||||||||||||||||||||| ||||||| |
|
|
| T |
10520339 |
gtcacaagggagatgggtagcaatgactcct |
10520309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 10 - 488
Target Start/End: Complemental strand, 10130214 - 10129746
Alignment:
| Q |
10 |
gtagcataggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggcagttttctggtaggaactgtggaacatacct |
109 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||| ||||||| |
|
|
| T |
10130214 |
gtagcagaggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagaggattgattattggc---tttctggtaggaacta-ggagcatacct |
10130119 |
T |
|
| Q |
110 |
gaaatgggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgttccttccttttatacc |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |||| | || ||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10130118 |
gaaatgggaacacaacttgtctatcatattgtgcctttgatattttt------gaaagggatgtgagcaattttggagcaatgttccttccttttatacc |
10130025 |
T |
|
| Q |
210 |
tttcttctaacaatggacatcgactgatctccagtctcttcagagagtcagggaggctgtcttctggtaatgactctagcttttcacatttccacaattc |
309 |
Q |
| |
|
||||||||||||||||||||| || |||| | | ||||| ||||||||||||||||||||||||||||||||||||||||| | ||| || || |
|
|
| T |
10130024 |
tttcttctaacaatggacatccttgaatgcacagttgcataagagaatcagggaggctgtcttctggtaatgactctagcttttcacaatcccaaaagtc |
10129925 |
T |
|
| Q |
310 |
aagtgatttcagcgaggaagggaggcagttttctgccaatgtctcaagttgatgacaattccaaaaacagagacgttggagagaggagaggtgtcggagc |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||| ||| |
|
|
| T |
10129924 |
aagtgatttcagcgaggaagggaggcagttttctggcaatgtctcaagttgatgacaattccaaaagaagagatgttggagagagaagaggtgtcgaagc |
10129825 |
T |
|
| Q |
410 |
ccatttccatcaaaggacttcatttcattgagatccttgatatctagttccacaagggagatgggtagcaacgactcct |
488 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||| |||||| ||| | ||||||||||||||||||||| ||||||| |
|
|
| T |
10129824 |
ccatttccatcaaaggacttcatttcatcgaaatccctgatatatagatacacaagggagatgggtagcaatgactcct |
10129746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 10 - 488
Target Start/End: Complemental strand, 10264000 - 10263525
Alignment:
| Q |
10 |
gtagcataggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggcagttttctggtaggaactgtggaacatacct |
109 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10264000 |
gtagcagaggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggc---tttctggtaggaactgtggaacatacct |
10263904 |
T |
|
| Q |
110 |
gaaatgggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgttccttccttttatacc |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | ||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10263903 |
gaaatgggaacacaacttgtctatcatattgtgacttcatcatttattcttatgaaagggatgtgagcaattttggactaatgttccttccttttatacc |
10263804 |
T |
|
| Q |
210 |
tttcttctaacaatggacatcgact-gatctccagtctcttcagagagtcagggaggctgtcttctggtaatgactctagcttttcacatttccacaatt |
308 |
Q |
| |
|
|||||||||||||||| || ||| ||| | ||| || |||||| |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10263803 |
tttcttctaacaatgggca-aaactcgatagcgagtagtttaagagaggaagggaggctgtcttctggtaatgactctagcttttcacatccaagcaata |
10263705 |
T |
|
| Q |
309 |
caagtgatttcagcgaggaagggaggcagttttctgccaatgtctcaagttgatgacaattccaaaaacagagacgttggagagaggagaggtgtcggag |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||| | || |
|
|
| T |
10263704 |
gaagtgatttcagcgaggaagggaggcagttttctggcaatgtctcaagttgatgacaaaagaaaaaacagagatattggagagaggagaggtgttgaag |
10263605 |
T |
|
| Q |
409 |
cccatttccatcaaaggacttcatttcattgagatccttgatatctagttccacaagggagatgggtagcaacgactcct |
488 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| || | ||| | || |||||||||||||||||| ||||||| |
|
|
| T |
10263604 |
cccatttccatcaaaggacttcatttcagagagatcaaagacacgtagatacaaaagggagatgggtagcaatgactcct |
10263525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 116 - 488
Target Start/End: Original strand, 10430914 - 10431286
Alignment:
| Q |
116 |
ggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttctt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10430914 |
ggaacacaacttgtctatcatattgtgacttcatcatttatatctatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttctt |
10431013 |
T |
|
| Q |
216 |
ctaacaatggacatcgactgatctccagtctcttcagagagtcagggaggctgtcttctggtaatgactctagcttttcacatttccacaattcaagtga |
315 |
Q |
| |
|
|||||||||||||| || || |||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
10431014 |
ctaacaatggacattccctaattctcagttgcttaagagagtcagggaggctgtcttctggtaatgactcaagcttttcacatttccacaaatcaagtga |
10431113 |
T |
|
| Q |
316 |
tttcagcgaggaagggaggcagttttctgccaatgtctcaagttgatgacaattccaaaaacagagacgttggagagaggagaggtgtcggagcccattt |
415 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
10431114 |
tttcagcgaggaagggaggcagttttctggcaatgtctcaagttgatcacaaaaccaaaaacagagagtttggagagaggagaggtgtcgcagcccattt |
10431213 |
T |
|
| Q |
416 |
ccatcaaaggacttcatttcattgagatccttgatatctagttccacaagggagatgggtagcaacgactcct |
488 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||| ||| | ||||||||||||||||||||||||||||| |
|
|
| T |
10431214 |
ccatcaaaggacttcatttcagagagatcagtgatatatagatacacaagggagatgggtagcaacgactcct |
10431286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 58 - 488
Target Start/End: Complemental strand, 9842109 - 9841682
Alignment:
| Q |
58 |
tacagatgattgattattggcagttttctggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtgactttgtaatttatt |
157 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| || ||||| |
|
|
| T |
9842109 |
tacagaggattgattattggc---tttctggtaggaactgtggaacatacctgaaacgggaacacaacttgtctatcatattctgacttggtggtttatc |
9842013 |
T |
|
| Q |
158 |
tgtatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacatcgactgatctccagtctcttcagagagt |
257 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | || | ||| | || ||||||| |
|
|
| T |
9842012 |
catatgacagggatgtgagcaattttggagcaatgttccttccttttatacctttcttctaacaatggacatccccaaatgttcagacgctcaagagagt |
9841913 |
T |
|
| Q |
258 |
cagggaggctgtcttctggtaatgactctagcttttcacatttccacaattcaagtgatttcagcgaggaagggaggcagttttctgccaatgtctcaag |
357 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
9841912 |
cagggaggctgtcttctggtaatgactcaagcttttcacattgaaacaatataagtgatttcagcgaggaagggaggcagttttctggcaatgactcaag |
9841813 |
T |
|
| Q |
358 |
ttgatgacaattccaaaaacagagacgttggagagaggagaggtgtcggagcccatttccatcaaaggacttcatttcattgagatccttgatatctagt |
457 |
Q |
| |
|
|| ||||| | ||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||| ||| |
|
|
| T |
9841812 |
ctgtggacaaaacgaaaaatcgagatattggagagaggagaggtgtcgaagcccatttccatcaaaggacttcatttcagagagatccctgatatttaga |
9841713 |
T |
|
| Q |
458 |
tccacaagggagatgggtagcaacgactcct |
488 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
9841712 |
gacacaagggagatgggtagcaacgactcct |
9841682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 58 - 357
Target Start/End: Complemental strand, 9853128 - 9852832
Alignment:
| Q |
58 |
tacagatgattgattattggcagttttctggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtgactttgtaatttatt |
157 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | || ||||||| |
|
|
| T |
9853128 |
tacagaggattgattattggc---tttctggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtaacctggtcatttatt |
9853032 |
T |
|
| Q |
158 |
tgtatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacatcgactgatctccagtctcttcagagagt |
257 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||| |||| |
|
|
| T |
9853031 |
tctatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacatccataaatgtccagtctcttcagtgagt |
9852932 |
T |
|
| Q |
258 |
cagggaggctgtcttctggtaatgactctagcttttcacatttccacaattcaagtgatttcagcgaggaagggaggcagttttctgccaatgtctcaag |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||| |||||| |
|
|
| T |
9852931 |
cagggaggctgtcttctggtaatgactctagcttttcacatttccacaattcaagtgatttcagcgatgatgggaggcagttttctggtaatgactcaag |
9852832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 101 - 488
Target Start/End: Original strand, 10360658 - 10361046
Alignment:
| Q |
101 |
aacatacctgaaat-gggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgttccttc |
199 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| || ||||||| |||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
10360658 |
aacatacctgaaaacgggaacacaacttgtctatcatattgtgacttggtcgtttatttttatgacggggatgtgagcaattttggagcaatgttccttc |
10360757 |
T |
|
| Q |
200 |
cttttatacctttcttctaacaatggacatcgactgatctccagtctcttcagagagtcagggaggctgtcttctggtaatgactctagcttttcacatt |
299 |
Q |
| |
|
|||||||||||||||||||||||||| || | ||| |||||| ||| |||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
10360758 |
cttttatacctttcttctaacaatgggcaatcatagatgtccagttccttaagagagtcagggaggctgtcttctggtaatgatttaagcttttcacaac |
10360857 |
T |
|
| Q |
300 |
tccacaattcaagtgatttcagcgaggaagggaggcagttttctgccaatgtctcaagttgatgacaattccaaaaaca-gagacgttggagagaggaga |
398 |
Q |
| |
|
| ||| ||||||||||||||||||||||||||||||||||| |||| |||||| || ||| |||| ||||| | |||| ||||||||||||||| |
|
|
| T |
10360858 |
cataaaatgtaagtgatttcagcgaggaagggaggcagttttctggtaatgactcaagctgtcgac-attcaaaaaatacgagatgttggagagaggaga |
10360956 |
T |
|
| Q |
399 |
ggtgtcggagcccatttccatcaaaggacttcatttcattgagatccttgatatctagttccacaagggagatgggtagcaacgactcct |
488 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||| | ||| || || ||||||||||| ||||||||| ||||||| |
|
|
| T |
10360957 |
ggtgtcgaagcccatttccatcaaaggacttcatttcagagagatgatggatttccagagacacaagggagacgggtagcaatgactcct |
10361046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 115 - 481
Target Start/End: Original strand, 11778855 - 11779220
Alignment:
| Q |
115 |
gggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttct |
214 |
Q |
| |
|
||||||||| ||||| | ||||||||||||||| | |||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
11778855 |
gggaacacagcttgt-tctcatattgtgactttttcatttatttctatgacagggatgtgagcgattttggaccaatgttctttccttttatacctttct |
11778953 |
T |
|
| Q |
215 |
tctaacaatggacatcgactgatctccagtctcttcagagagtcagggaggctgtcttctggtaatgactctagcttttcacatttccacaattcaagtg |
314 |
Q |
| |
|
||||||||||| |||| | || |||| ||| |||||||| |||||||||||||| ||||||||||| |||| ||||| | ||| ||||| |
|
|
| T |
11778954 |
tctaacaatgggcatccccaaatggtcagttgcttaagagagtcggggaggctgtcttccggtaatgactcaagctcctcacacatttgaaatgaaagtg |
11779053 |
T |
|
| Q |
315 |
atttcagcgaggaagggaggcagttttctgccaatgtctcaagttgatgacaattccaaaaacagagacgttggagagaggagaggtgtcggagcccatt |
414 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||| ||| || || ||||||||||||||| ||||| || |||||||||||||||||| |||||||| |
|
|
| T |
11779054 |
atttcaacgaggaagggaggcagttttctggcaatgactcgagctgttgacaattccaaaaatagagatattcgagagaggagaggtgtcgaagcccatt |
11779153 |
T |
|
| Q |
415 |
tccatcaaaggacttcatttcattgagatccttgatatctagttccacaagggagatgggtagcaac |
481 |
Q |
| |
|
|||||| |||||||||||||||| |||||| ||||| || |||||||||||||| ||||||||| |
|
|
| T |
11779154 |
tccatcgaaggacttcatttcatagagatcaatgatagacaggtccacaagggagataggtagcaac |
11779220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 105 - 344
Target Start/End: Complemental strand, 10666742 - 10666503
Alignment:
| Q |
105 |
tacctgaaatgggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgttccttcctttt |
204 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10666742 |
tacctgaaacaggaacacaactcgtctatcatattgtgactttgtaatttattgatatgacagggatgtgagcaattttggaccaatgttccttcctttt |
10666643 |
T |
|
| Q |
205 |
atacctttcttctaacaatggacatcgactgatctccagtctcttcagagagtcagggaggctgtcttctggtaatgactctagcttttcacatttccac |
304 |
Q |
| |
|
||||||||||||||||||||||||| || | |||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
10666642 |
atacctttcttctaacaatggacattcctcaatgtgcagttccttaagagagtcagggaggctgtcttctggtaatgactcaagcttttcacattcaaac |
10666543 |
T |
|
| Q |
305 |
aattcaagtgatttcagcgaggaagggaggcagttttctg |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
10666542 |
aattcaagtgatttcagcgaggaagggaggctgtcttctg |
10666503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 115 - 486
Target Start/End: Complemental strand, 11772430 - 11772060
Alignment:
| Q |
115 |
gggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttct |
214 |
Q |
| |
|
||||||||| ||||| | ||||||||||||||| | |||||| | |||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
11772430 |
gggaacacagcttgt-tctcatattgtgactttttcatttatatctatgacagggatgtgagcgattttggaccaatgttctttccttttatacctttct |
11772332 |
T |
|
| Q |
215 |
tctaacaatggacatcgactgatctccagtctcttcagagagtcagggaggctgtcttctggtaatgactctagcttttcacatttccacaattcaagtg |
314 |
Q |
| |
|
||||||||||| |||| | || |||| ||| |||||||| |||||||||||||| ||||||||||| |||| ||||| | ||| ||||| |
|
|
| T |
11772331 |
tctaacaatgggcatccccaaatggtcagttgcttaagagagtcggggaggctgtcttccggtaatgactcaagctcctcacacatttgaaatgaaagtg |
11772232 |
T |
|
| Q |
315 |
atttcagcgaggaagggaggcagttttctgccaatgtctcaagttgatgacaattccaaaaacagagacgttggagagaggagaggtgtcggagcccatt |
414 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||| ||| || || ||||||||||||||| ||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
11772231 |
atttcaacgaggaagggaggcagttttctggcaatgactcgagctgttgacaattccaaaaatagagatattggagagaggagaggtgtcgaagcccatt |
11772132 |
T |
|
| Q |
415 |
tccatcaaaggacttcatttcattgagatccttgatatctagttccacaagggagatgggtagcaacgactc |
486 |
Q |
| |
|
||||||||| ||||||||||||| |||||| ||||| || |||||||||||||| || |||||| |||| |
|
|
| T |
11772131 |
tccatcaaaagacttcatttcatagagatcaatgatagacaggtccacaagggagataggcagcaacaactc |
11772060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 66 - 344
Target Start/End: Complemental strand, 10583829 - 10583550
Alignment:
| Q |
66 |
attgattattggcagttttctggtaggaactgtggaacatacctgaaat-gggaacacaacttgtctatcatattgtgactttgtaatttatttgtatga |
164 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10583829 |
attgattattggcagttttctggtaggaaatgtggaacatacctgaaaacgggaacacaacttgtctatcatattgtgactttgtgatttatttgtatga |
10583730 |
T |
|
| Q |
165 |
cagggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacatcgactgatctccagtctcttcagagagtcagggag |
264 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| || ||| ||||| || |||||||||||||| |
|
|
| T |
10583729 |
cagggatgtgagcaattttggaccaatattcattccttttatacctttcttctaacaatgggcaaaattggatggtcagtcgctcaagagagtcagggag |
10583630 |
T |
|
| Q |
265 |
gctgtcttctggtaatgactctagcttttcacatttccac-aattcaagtgatttcagcgaggaagggaggcagttttctg |
344 |
Q |
| |
|
||||||||||||||||||||| || || |||| |||| |||| |||||||||||||||||||||||||| || ||||| |
|
|
| T |
10583629 |
gctgtcttctggtaatgactcgagtcttacaca-acccacaaattgaagtgatttcagcgaggaagggaggctgtcttctg |
10583550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 259 - 488
Target Start/End: Complemental strand, 10583566 - 10583337
Alignment:
| Q |
259 |
agggaggctgtcttctggtaatgactctagcttttcacatttccacaattcaagtgatttcagcgaggaagggaggcagttttctgccaatgtctcaagt |
358 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||| | | ||| |||||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
10583566 |
agggaggctgtcttctggtaatgacccaagcttttcacaatccataaatgaaagtgatttcagtgaggaagggaggcagttttctggcaatgtctcaagt |
10583467 |
T |
|
| Q |
359 |
tgatgacaattccaaaaacagagacgttggagagaggagaggtgtcggagcccatttccatcaaaggacttcatttcattgagatccttgatatctagtt |
458 |
Q |
| |
|
||||||||| | ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| | ||||| ||| | |
|
|
| T |
10583466 |
tgatgacaaatgaaaaaacagagatattggagagaggagaggtgtcgcagcccatttccatcaaaggacttcatttcagagagattccagatatatagat |
10583367 |
T |
|
| Q |
459 |
ccacaagggagatgggtagcaacgactcct |
488 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
10583366 |
acacaagggagatgggtagcaacgactcct |
10583337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 101 - 297
Target Start/End: Original strand, 10372768 - 10372965
Alignment:
| Q |
101 |
aacatacctgaaat-gggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgttccttc |
199 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| || || ||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
10372768 |
aacatacctgaaaacgggaacacaacttgtctatcatattgtgatttggtcgtttatttttatgacggggatgtgagcaattttggaccaatgttccttc |
10372867 |
T |
|
| Q |
200 |
cttttatacctttcttctaacaatggacatcgactgatctccagtctcttcagagagtcagggaggctgtcttctggtaatgactctagcttttcaca |
297 |
Q |
| |
|
|||||||||||||||||||||||||| |||| | || ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10372868 |
cttttatacctttcttctaacaatgggcatcccataatgaccagtctcttcagagaggaagggaggctgtcttctggtaatgactcaagcttttcaca |
10372965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 103 - 357
Target Start/End: Complemental strand, 10531989 - 10531736
Alignment:
| Q |
103 |
catacctgaaatgggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgttccttcctt |
202 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||| |||| | |||||| ||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
10531989 |
catacctgaaacgggaacacaacttgtct-tcatattgtaacttgcttgtttattattatgacagggatgtgagaaattttggaccaattttccttcctt |
10531891 |
T |
|
| Q |
203 |
ttatacctttcttctaacaatggacatcgact-gatctccagtctcttcagagagtcagggaggctgtcttctggtaatgactctagcttttcacatttc |
301 |
Q |
| |
|
||||||||||||||||||||||| || ||| ||| ||| || |||||| ||||||||||||||||||||||||||| || || |||| || |
|
|
| T |
10531890 |
ttatacctttcttctaacaatgggca-aaactcgatagtgagtagtttaagagaggaagggaggctgtcttctggtaatgactcaagtcttacacaactc |
10531792 |
T |
|
| Q |
302 |
cacaattcaagtgatttcagcgaggaagggaggcagttttctgccaatgtctcaag |
357 |
Q |
| |
|
| |||| |||||| |||||||||||||||||||| ||||||| ||||| |||||| |
|
|
| T |
10531791 |
gaaaattgaagtgacttcagcgaggaagggaggcaattttctggcaatgactcaag |
10531736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 133 - 432
Target Start/End: Complemental strand, 10086354 - 10086056
Alignment:
| Q |
133 |
tcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaac-aatggacatcg |
231 |
Q |
| |
|
||||||||||| || | |||||||| ||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||| |||| || ||| | |
|
|
| T |
10086354 |
tcatattgtgatttcgccatttatttttatgacaggaatgagagaaattttggaccaatgttccttccttttatacctttcttttaacaaagggaaaaat |
10086255 |
T |
|
| Q |
232 |
actgatctccagtctcttcagagagtcagggaggctgtcttctggtaatgactctagcttttcacatttccacaattcaagtgatttcagcgaggaaggg |
331 |
Q |
| |
|
|| ||| ||| | ||||||||| |||||||||| |||||| |||||||| || || ||||||| |||| | |||||||||||||||||||||||| |
|
|
| T |
10086254 |
ac-gatgctcagacgcttcagagaatcagggaggcagtcttccggtaatgattcaagtctttcacaactccaaatttcaagtgatttcagcgaggaagga |
10086156 |
T |
|
| Q |
332 |
aggcagttttctgccaatgtctcaagttgatgacaattccaaaaacagagacgttggagagaggagaggtgtcggagcccatttccatcaaaggacttca |
431 |
Q |
| |
|
| ||| ||||| | |||| ||||||||| |||||||| | ||| ||| || |||| ||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
10086155 |
acgcaattttcaggaaatggctcaagttgttgacaattacgaaagtgaaga-tttcgagaaaggagaggtgttgaagcccatttccatcaaaggacttca |
10086057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 105 - 357
Target Start/End: Complemental strand, 10092202 - 10091950
Alignment:
| Q |
105 |
tacctgaaatgggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgttccttcctttt |
204 |
Q |
| |
|
||||||||| ||| |||| |||||||||||||||||| || || |||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
10092202 |
tacctgaaacaggagcacagcttgtctatcatattgtgcgttggttgtttattgtgatgacagggatgtgagaaattttggaccaatgttccttcctttt |
10092103 |
T |
|
| Q |
205 |
atacctttcttctaacaatggacatcgactgatctccagtctcttcagagagtcagggaggctgtcttctggtaatgactctagcttttcacatttccac |
304 |
Q |
| |
|
||||||||||||||||||||| |||| | || | ||| | | ||||| |||||||||||||||||||||||| || ||| ||| ||| | | | |
|
|
| T |
10092102 |
atacctttcttctaacaatgggcatcccataatgtacagagtgataagagatgaagggaggctgtcttctggtaatgaatcaagcattttacaatcactc |
10092003 |
T |
|
| Q |
305 |
aattcaagtgatttcagcgaggaagggaggcagttttctgccaatgtctcaag |
357 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||| |||| |||| |||||| |
|
|
| T |
10092002 |
aatctaagtgatttcagcgaggacgggaggcagttgtctggaaatgactcaag |
10091950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 105 - 357
Target Start/End: Complemental strand, 10199084 - 10198832
Alignment:
| Q |
105 |
tacctgaaatgggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgttccttcctttt |
204 |
Q |
| |
|
||||||||| ||| |||| |||||||||||||||||| || || |||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
10199084 |
tacctgaaacaggagcacagcttgtctatcatattgtgcgttggttgtttattgtgatgacagggatgtgagaaattttggaccaatgttccttcctttt |
10198985 |
T |
|
| Q |
205 |
atacctttcttctaacaatggacatcgactgatctccagtctcttcagagagtcagggaggctgtcttctggtaatgactctagcttttcacatttccac |
304 |
Q |
| |
|
||||||||||||||||||||| |||| | || | ||| | | ||||| |||||||||||||||||||||||| || ||| ||| ||| | | | |
|
|
| T |
10198984 |
atacctttcttctaacaatgggcatcccataatgtacagagtgataagagatgaagggaggctgtcttctggtaatgaatcaagcattttacaatcactc |
10198885 |
T |
|
| Q |
305 |
aattcaagtgatttcagcgaggaagggaggcagttttctgccaatgtctcaag |
357 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||| |||| |||| |||||| |
|
|
| T |
10198884 |
aatctaagtgatttcagcgaggacgggaggcagttgtctggaaatgactcaag |
10198832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 305 - 488
Target Start/End: Complemental strand, 9852746 - 9852563
Alignment:
| Q |
305 |
aattcaagtgatttcagcgaggaagggaggcagttttctgccaatgtctcaagttgatgacaattccaaaaacagagacgttggagagaggagaggtgtc |
404 |
Q |
| |
|
|||| |||||||||||| |||||||||| ||||||||||| ||||| | |||| || |||||| | |||| ||||| |||||||||| ||||||||| |
|
|
| T |
9852746 |
aatttaagtgatttcagtgaggaagggaagcagttttctggcaatgacccaagctgttgacaacccgcaaaatagagatattggagagagaagaggtgtc |
9852647 |
T |
|
| Q |
405 |
ggagcccatttccatcaaaggacttcatttcattgagatccttgatatctagttccacaagggagatgggtagcaacgactcct |
488 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |||| || |||||| ||| ||||||||||||||||||||| ||||||| |
|
|
| T |
9852646 |
gaagcccatttccatcaaaggacttcatttcagagagaaccatgatatttagagacacaagggagatgggtagcaatgactcct |
9852563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 133 - 482
Target Start/End: Complemental strand, 10193274 - 10192926
Alignment:
| Q |
133 |
tcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaac-aatggacatcg |
231 |
Q |
| |
|
||||||||||| || | |||||||| ||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||| |||| || ||| | |
|
|
| T |
10193274 |
tcatattgtgatttcgccatttatttttatgacaggaatgagagaaattttggaccaatgttccttccttttatacctttcttttaacaaagggaaaaat |
10193175 |
T |
|
| Q |
232 |
actgatctccagtctcttcagagagtcagggaggctgtcttctggtaatgactctagcttttcacatttccacaattcaagtgatttcagcgaggaaggg |
331 |
Q |
| |
|
|| ||| || | ||||||||| |||||||||| |||||| |||||||| || || ||||||| |||| | |||||||||||||||||||||||| |
|
|
| T |
10193174 |
ac-gatgcttagacgcttcagagaatcagggaggcagtcttccggtaatgattcaagtctttcacaactccaaatttcaagtgatttcagcgaggaagga |
10193076 |
T |
|
| Q |
332 |
aggcagttttctgccaatgtctcaagttgatgacaattccaaaaacagagacgttggagagaggagaggtgtcggagcccatttccatcaaaggacttca |
431 |
Q |
| |
|
| ||| ||||| | |||| ||||||||| |||||||| | ||| ||| || |||| ||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
10193075 |
acgcaattttcaggaaatggctcaagttgttgacaattacgaaagtgaaga-tttcgagaaaggagaggtgttgaagcccatttccatcaaaggacttca |
10192977 |
T |
|
| Q |
432 |
tttcattgagatccttgatatctagttccacaagggagatgggtagcaacg |
482 |
Q |
| |
|
| | || |||||| |||| || ||||||||||||||||||||||| |
|
|
| T |
10192976 |
tgttatagagatcaccaatattcagagacacaagggagatgggtagcaacg |
10192926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 317 - 488
Target Start/End: Original strand, 10372916 - 10373087
Alignment:
| Q |
317 |
ttcagcgaggaagggaggcagttttctgccaatgtctcaagttgatgacaattccaaaaacagagacgttggagagaggagaggtgtcggagcccatttc |
416 |
Q |
| |
|
||||| ||||||||||||| || ||||| |||| |||||| | | |||||| ||||| ||||| || |||||||||||||||||| |||||||||| |
|
|
| T |
10372916 |
ttcagagaggaagggaggctgtcttctggtaatgactcaagcttttcacaattaaaaaaatagagatttttgagagaggagaggtgtcgaagcccatttc |
10373015 |
T |
|
| Q |
417 |
catcaaaggacttcatttcattgagatccttgatatctagttccacaagggagatgggtagcaacgactcct |
488 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||| ||| | ||||||||||||||||||||||||||||| |
|
|
| T |
10373016 |
catcaaaggacttcatttcagagagataattgatacgtagatgcacaagggagatgggtagcaacgactcct |
10373087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 105 - 357
Target Start/End: Complemental strand, 10680785 - 10680534
Alignment:
| Q |
105 |
tacctgaaatgggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgttccttcctttt |
204 |
Q |
| |
|
||||||||| || ||||||||||| | |||||||||||||| | |||||| ||||||||||||||||| ||||||||||| |||||| |||||||| |
|
|
| T |
10680785 |
tacctgaaacggaaacacaacttgacc-tcatattgtgacttgcttgtttattattatgacagggatgtgagaaattttggaccgatgttcattcctttt |
10680687 |
T |
|
| Q |
205 |
atacctttcttctaacaatggacatcgactgatctccagtctcttcagagagtcagggaggctgtcttctggtaatgactctagcttttcacatttccac |
304 |
Q |
| |
|
||||||||||||||||||||| || |||| ||| || |||||| ||||||||||||||||||||| |||| || || |||| || | |
|
|
| T |
10680686 |
atacctttcttctaacaatgggcaaaacttgatagtgagtagtttaagagaggaagggaggctgtcttctggtaacaactcaagtcttacacaactcaaa |
10680587 |
T |
|
| Q |
305 |
aattcaagtgatttcagcgaggaagggaggcagttttctgccaatgtctcaag |
357 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||| |||| |||||| |
|
|
| T |
10680586 |
aattgaagtgatttcagcgaggaagggaggcaattttctggaaatgactcaag |
10680534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 310 - 445
Target Start/End: Complemental strand, 10091790 - 10091655
Alignment:
| Q |
310 |
aagtgatttcagcgaggaagggaggcagttttctgccaatgtctcaagttgatgacaattccaaaaacagagacgttggagagaggagaggtgtcggagc |
409 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||| || ||| || |||| | || ||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
10091790 |
aagtgttttcagcgaggaagggaggcagttttctggcaatgactgaagctgtcgacattgacagaaatcgagacgttggagagaggagaggtgtcgaagc |
10091691 |
T |
|
| Q |
410 |
ccatttccatcaaaggacttcatttcattgagatcc |
445 |
Q |
| |
|
||||||||||||||||||||||| | || ||||||| |
|
|
| T |
10091690 |
ccatttccatcaaaggacttcatcttatagagatcc |
10091655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 310 - 445
Target Start/End: Complemental strand, 10198672 - 10198537
Alignment:
| Q |
310 |
aagtgatttcagcgaggaagggaggcagttttctgccaatgtctcaagttgatgacaattccaaaaacagagacgttggagagaggagaggtgtcggagc |
409 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||| || ||| || |||| | || ||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
10198672 |
aagtgttttcagcgaggaagggaggcagttttctggcaatgactgaagctgtcgacattgacagaaatcgagacgttggagagaggagaggtgtcgaagc |
10198573 |
T |
|
| Q |
410 |
ccatttccatcaaaggacttcatttcattgagatcc |
445 |
Q |
| |
|
||||||||||||||||||||||| | || ||||||| |
|
|
| T |
10198572 |
ccatttccatcaaaggacttcatcttatagagatcc |
10198537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 10430718 - 10430786
Alignment:
| Q |
10 |
gtagcataggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggc |
78 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10430718 |
gtagcagaggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggc |
10430786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 309 - 488
Target Start/End: Complemental strand, 10503585 - 10503406
Alignment:
| Q |
309 |
caagtgatttcagcgaggaagggaggcagttttctgccaatgtctcaagttgatgacaattccaaaaacagagacgttggagagaggagaggtgtcggag |
408 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||| |||||| || ||||||| ||| ||| || ||||||||||| ||||| || |
|
|
| T |
10503585 |
caagtaatttcagcgaggaagggaggcagttttctggcaatgactcaagctgtagacaattaagaaattcaagattttcgagagaggagatttgtcgaag |
10503486 |
T |
|
| Q |
409 |
cccatttccatcaaaggacttcatttcattgagatccttgatatctagttccacaagggagatgggtagcaacgactcct |
488 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||| ||| ||||||||||||| ||||||||||||| |
|
|
| T |
10503485 |
cccatttccatcaaaggacttcatttcatagagatcactgatatatagagatgcaagggagatgggaagcaacgactcct |
10503406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 105 - 297
Target Start/End: Complemental strand, 10503857 - 10503666
Alignment:
| Q |
105 |
tacctgaaatgggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgttccttcctttt |
204 |
Q |
| |
|
||||||||| ||||||||| | |||| |||||||||||||| || ||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
10503857 |
tacctgaaacgggaacacagcctgtcc-tcatattgtgacttgtccatctatttctatgacagggatgtgagaaattttggaccaatgttccttcctttt |
10503759 |
T |
|
| Q |
205 |
atacctttcttctaacaatggacatc---gactgatctccagtctcttcagagagtcagggaggctgtcttctggtaatgactctagcttttcaca |
297 |
Q |
| |
|
||||||||||||||| ||| |||| || |||| |||| ||| ||||| ||||| |||||||||||||||||||| | ||||||||||| |
|
|
| T |
10503758 |
atacctttcttctaatgttgggcatctttgaatgat---cagtagcttaagagaatcaggaaggctgtcttctggtaatgagtaaagcttttcaca |
10503666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 133 - 221
Target Start/End: Original strand, 11242462 - 11242551
Alignment:
| Q |
133 |
tcatattgtgactttg-taatttatttgtatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaaca |
221 |
Q |
| |
|
|||||||||||||| | | ||||||| | |||||| |||||||| ||||||||||||||||||| | ||| ||||||||||||||||| |
|
|
| T |
11242462 |
tcatattgtgacttgggtcatttattattttgacagtaatgtgagctattttggaccaatgttcctgcttttgatacctttcttctaaca |
11242551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 431
Target Start/End: Complemental strand, 10666462 - 10666347
Alignment:
| Q |
316 |
tttcagcgaggaagggaggcagttttctgccaatgtctcaagttgatgacaattc-caaaaacagagacgttggagagaggagaggtgtcggagcccatt |
414 |
Q |
| |
|
|||||| || ||||||||| ||||||||| |||| ||| || || ||||||| | |||| || ||||||| |||||||||||||||| | |||||||| |
|
|
| T |
10666462 |
tttcagagatgaagggaggtagttttctggtaatgactccagctgttgacaatactcaaattca-agacgtttgagagaggagaggtgtagaagcccatt |
10666364 |
T |
|
| Q |
415 |
tccatcaaaggacttca |
431 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
10666363 |
tccattaaaggacttca |
10666347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 363 - 436
Target Start/End: Original strand, 13852563 - 13852636
Alignment:
| Q |
363 |
gacaattccaaaaacagagacgttggagagaggagaggtgtcggagcccatttccatcaaaggacttcatttca |
436 |
Q |
| |
|
||||||||||||| | |||| | |||||||||||| ||||| |||||||||||||| || |||||||||||| |
|
|
| T |
13852563 |
gacaattccaaaatccgagattgttgagagaggagagatgtcgaagcccatttccatcgaaagacttcatttca |
13852636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 344
Target Start/End: Complemental strand, 10091966 - 10091894
Alignment:
| Q |
272 |
tctggtaatgactctagcttttcacatttccacaattcaagtgatttcagcgaggaagggaggcagttttctg |
344 |
Q |
| |
|
||||| |||||||| ||||||||||| ||| ||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
10091966 |
tctggaaatgactcaagcttttcacaattcgcaaatcgaagtgatttcagcgacaaagggaggcagttttctg |
10091894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 344
Target Start/End: Complemental strand, 10198848 - 10198776
Alignment:
| Q |
272 |
tctggtaatgactctagcttttcacatttccacaattcaagtgatttcagcgaggaagggaggcagttttctg |
344 |
Q |
| |
|
||||| |||||||| ||||||||||| ||| ||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
10198848 |
tctggaaatgactcaagcttttcacaattcgcaaatcgaagtgatttcagcgacaaagggaggcagttttctg |
10198776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 13163906 - 13163859
Alignment:
| Q |
389 |
agagaggagaggtgtcggagcccatttccatcaaaggacttcatttca |
436 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||| || |||||| |
|
|
| T |
13163906 |
agagaggataggtgtcggagtccatttccatcaaaggattttatttca |
13163859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 151 - 197
Target Start/End: Original strand, 8585532 - 8585578
Alignment:
| Q |
151 |
atttatttgtatgacagggatgtgagcaattttggaccaatgttcct |
197 |
Q |
| |
|
|||||| | ||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
8585532 |
atttatatttatgacaggtatgtgagcaatgttggaccaatgttcct |
8585578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 436
Target Start/End: Complemental strand, 10531705 - 10531657
Alignment:
| Q |
388 |
gagagaggagaggtgtcggagcccatttccatcaaaggacttcatttca |
436 |
Q |
| |
|
|||||||||||||||||| || |||||||| ||||| ||||| |||||| |
|
|
| T |
10531705 |
gagagaggagaggtgtcgaagtccatttccttcaaatgactttatttca |
10531657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 151 - 488
Target Start/End: Complemental strand, 26910049 - 26909712
Alignment:
| Q |
151 |
atttatttgtatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacatcgactgatctccagtctcttc |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || || ||||| ||| |
|
|
| T |
26910049 |
atttatttgtatgacagggatgtgagcaattttggaccaatgttccttccttttgtacctttcttctaacaatgggcaagatgacatttccagcatctca |
26909950 |
T |
|
| Q |
251 |
agagagtcagggaggctgtcttctggtaatgactctagcttttcacatttccacaattcaagtgatttcagcgaggaagggaggcagttttctgccaatg |
350 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| || || ||||| | |||| ||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
26909949 |
agagagtcggggaggctgtcttctggtaatgactcaagtttctcacagccataaaattgaagatatttcagcgaggaagggaggcagttttctggaaatg |
26909850 |
T |
|
| Q |
351 |
tctcaagttgatgacaattccaaaaacagagacgttggagagaggagaggtgtcggagcccatttccatcaaaggacttcatttcattgagatccttgat |
450 |
Q |
| |
|
|| ||||| | |||||| ||| ||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
26909849 |
acttgagttgttcacaattaataaagtgaagattttggagagaggagaggcgtcgaagcccatttccatcaaaggacttcatttcatagagatccatgat |
26909750 |
T |
|
| Q |
451 |
atctagttccacaagggagatgggtagcaacgactcct |
488 |
Q |
| |
|
| ||| ||||||||||||||||||||| |||||| |
|
|
| T |
26909749 |
ttgtagagaaacaagggagatgggtagcaacaactcct |
26909712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 133 - 431
Target Start/End: Original strand, 17849813 - 17850111
Alignment:
| Q |
133 |
tcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacatcga |
232 |
Q |
| |
|
|||||||||||||| || | |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | || ||||| |
|
|
| T |
17849813 |
tcatattgtgacttggtcctcaatttctatgacagggatgtgagcaattttggaccaatgttcctgccttttatacctttcttctaatatagggcatcgc |
17849912 |
T |
|
| Q |
233 |
ctgatctccagtctcttcagagagtcagggaggctgtcttctggtaatgactctagcttttcacatttccacaattcaagtgatttcagcgaggaaggga |
332 |
Q |
| |
|
| || |||||| ||| |||||| ||||||||||||||||||||| ||||| || ||| ||| | || |||||||| |||||||| |||||||||| |
|
|
| T |
17849913 |
caaatgaccagtcgcttaagagaggaagggaggctgtcttctggtaacgactcaagtcttttacaataacaaaattcaagcgatttcagtgaggaaggga |
17850012 |
T |
|
| Q |
333 |
ggcagttttctgccaatgtctcaagttgatgacaattccaaaaacagagacgttggagagaggagaggtgtcggagcccatttccatcaaaggacttca |
431 |
Q |
| |
|
||||||||| || ||||| ||||||||| ||||| || ||| |||| || |||||||| || ||||| || ||||||||||||||||| |||| |
|
|
| T |
17850013 |
ggcagttttgtggcaatgactcaagttgttgacagttaagaaagtcaagactttcaagagaggaaagatgtcgaagtccatttccatcaaaggagttca |
17850111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 133 - 437
Target Start/End: Original strand, 44954550 - 44954854
Alignment:
| Q |
133 |
tcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacatcga |
232 |
Q |
| |
|
|||||||||||||| | || ||||| ||||||| | || | |||||||||||||||||||||||||||| |||||||||||||| | | || ||||| |
|
|
| T |
44954550 |
tcatattgtgacttggccatctatttctatgacatgaattttagcaattttggaccaatgttccttccttctatacctttcttctgatacagggcatcgc |
44954649 |
T |
|
| Q |
233 |
ctgatctccagtctcttcagagagtcagggaggctgtcttctggtaatgactctagcttttcacatttccacaattcaagtgatttcagcgaggaaggga |
332 |
Q |
| |
|
| || |||||| || ||||||| |||||||| ||||||||||| ||||| || | |||||| | | |||| ||||||||||||||||||||| | |
|
|
| T |
44954650 |
caaatgaccagtcgattaagagagttggggaggctttcttctggtaacgactcaag-tcttcacaaaacaaaaattgaagtgatttcagcgaggaaggaa |
44954748 |
T |
|
| Q |
333 |
ggcagttttctgccaatgtctcaagttgatgacaattccaaaaacagagacgttggagagaggag-aggtgtcggagcccatttccatcaaaggacttca |
431 |
Q |
| |
|
| |||||||||| |||| |||||| || ||||| || | ||| |||| || |||||||||| |||||| | ||||||||||| | ||||||||||| |
|
|
| T |
44954749 |
gacagttttctggaaatgactcaagctgttgacagttacgaaagtggagattttcgagagaggagtaggtgttgaagcccatttccttgaaaggacttca |
44954848 |
T |
|
| Q |
432 |
tttcat |
437 |
Q |
| |
|
|||||| |
|
|
| T |
44954849 |
tttcat |
44954854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 11488254 - 11488217
Alignment:
| Q |
151 |
atttatttgtatgacagggatgtgagcaattttggacc |
188 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
11488254 |
atttatttctttgacagggatgtgagcaattttggacc |
11488217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 436
Target Start/End: Original strand, 143082 - 143129
Alignment:
| Q |
389 |
agagaggagaggtgtcggagcccatttccatcaaaggacttcatttca |
436 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||| || |||||| |
|
|
| T |
143082 |
agagaggataggtgtcggagtccatttccatcaaaggattttatttca |
143129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University