View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14275_low_16 (Length: 476)

Name: NF14275_low_16
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14275_low_16
NF14275_low_16
[»] chr4 (15 HSPs)
chr4 (92-268)||(12473699-12473875)
chr4 (92-268)||(12528108-12528284)
chr4 (96-263)||(35869575-35869742)
chr4 (100-263)||(22343337-22343500)
chr4 (106-268)||(21260789-21260951)
chr4 (115-262)||(33249397-33249544)
chr4 (92-268)||(55590477-55590642)
chr4 (96-268)||(51811909-51812081)
chr4 (92-268)||(52910050-52910225)
chr4 (167-264)||(52012777-52012874)
chr4 (167-269)||(49999663-49999765)
chr4 (185-262)||(34829176-34829253)
chr4 (167-265)||(9799438-9799536)
chr4 (215-268)||(49998477-49998530)
chr4 (96-151)||(35781021-35781076)
[»] chr7 (11 HSPs)
chr7 (275-441)||(38095172-38095338)
chr7 (92-268)||(48250149-48250327)
chr7 (87-268)||(35341531-35341712)
chr7 (92-263)||(48072389-48072558)
chr7 (92-199)||(32694570-32694677)
chr7 (16-68)||(38095101-38095153)
chr7 (170-259)||(31306951-31307041)
chr7 (170-209)||(40856485-40856524)
chr7 (108-159)||(40856949-40857000)
chr7 (199-268)||(40856387-40856456)
chr7 (167-270)||(40893116-40893220)
[»] chr5 (14 HSPs)
chr5 (92-258)||(33858538-33858704)
chr5 (92-268)||(11607534-11607710)
chr5 (92-263)||(19357262-19357432)
chr5 (96-268)||(1826254-1826426)
chr5 (129-268)||(39570080-39570219)
chr5 (92-247)||(33271630-33271785)
chr5 (167-268)||(13015376-13015477)
chr5 (167-264)||(38010689-38010786)
chr5 (168-264)||(13086752-13086848)
chr5 (167-264)||(29989961-29990058)
chr5 (167-269)||(9827782-9827884)
chr5 (167-264)||(13478120-13478217)
chr5 (112-206)||(42148203-42148297)
chr5 (167-262)||(13421085-13421180)
[»] chr2 (15 HSPs)
chr2 (275-403)||(2757883-2758011)
chr2 (310-441)||(26179317-26179448)
chr2 (92-268)||(34392081-34392257)
chr2 (167-269)||(21603953-21604055)
chr2 (92-269)||(23863803-23863985)
chr2 (17-89)||(2758008-2758080)
chr2 (92-269)||(7381686-7381862)
chr2 (92-268)||(37357917-37358097)
chr2 (99-270)||(4775627-4775799)
chr2 (96-240)||(4779608-4779752)
chr2 (92-153)||(21606149-21606210)
chr2 (185-269)||(14565946-14566030)
chr2 (92-159)||(25275622-25275689)
chr2 (215-268)||(34904304-34904357)
chr2 (217-269)||(37811085-37811137)
[»] chr8 (10 HSPs)
chr8 (294-444)||(32019445-32019594)
chr8 (96-268)||(41179567-41179739)
chr8 (92-268)||(24337830-24338006)
chr8 (92-263)||(11254028-11254198)
chr8 (118-255)||(4708333-4708470)
chr8 (15-89)||(32019354-32019428)
chr8 (137-262)||(32825880-32826005)
chr8 (100-265)||(18168383-18168549)
chr8 (100-265)||(18631940-18632106)
chr8 (167-264)||(1514802-1514899)
[»] chr1 (11 HSPs)
chr1 (92-268)||(29119324-29119500)
chr1 (94-269)||(32676130-32676305)
chr1 (92-268)||(46435465-46435629)
chr1 (92-263)||(2569037-2569207)
chr1 (112-268)||(8462124-8462279)
chr1 (89-264)||(8809636-8809812)
chr1 (170-268)||(25161304-25161402)
chr1 (167-262)||(6223052-6223147)
chr1 (201-259)||(7214520-7214578)
chr1 (167-264)||(35998251-35998348)
chr1 (229-267)||(16679835-16679873)
[»] chr3 (21 HSPs)
chr3 (276-441)||(47955629-47955793)
chr3 (96-269)||(44380248-44380421)
chr3 (117-268)||(47426345-47426496)
chr3 (91-268)||(33509675-33509852)
chr3 (92-250)||(37742738-37742896)
chr3 (114-261)||(39498692-39498838)
chr3 (99-240)||(17466296-17466437)
chr3 (167-262)||(50934501-50934596)
chr3 (94-268)||(35094541-35094717)
chr3 (167-269)||(42664667-42664769)
chr3 (167-264)||(47186174-47186271)
chr3 (15-75)||(47955557-47955617)
chr3 (167-269)||(31187145-31187247)
chr3 (195-261)||(32319468-32319534)
chr3 (197-268)||(10179868-10179939)
chr3 (167-264)||(34029366-34029463)
chr3 (92-147)||(19619214-19619269)
chr3 (197-268)||(10018671-10018742)
chr3 (197-268)||(10123211-10123282)
chr3 (115-159)||(25859019-25859063)
chr3 (217-269)||(34955067-34955119)
[»] chr6 (7 HSPs)
chr6 (92-268)||(5403876-5404052)
chr6 (96-262)||(1211848-1212014)
chr6 (92-269)||(32644838-32645013)
chr6 (96-264)||(34245566-34245735)
chr6 (198-265)||(11753165-11753232)
chr6 (170-268)||(11113551-11113649)
chr6 (92-136)||(10503259-10503303)
[»] scaffold0519 (1 HSPs)
scaffold0519 (92-263)||(11195-11365)
[»] scaffold0229 (1 HSPs)
scaffold0229 (92-262)||(13005-13176)
[»] scaffold0032 (1 HSPs)
scaffold0032 (92-268)||(34189-34363)
[»] scaffold0263 (2 HSPs)
scaffold0263 (167-268)||(23174-23269)
scaffold0263 (215-268)||(23088-23141)
[»] scaffold0041 (1 HSPs)
scaffold0041 (167-270)||(73064-73168)


Alignment Details
Target: chr4 (Bit Score: 120; Significance: 3e-61; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 92 - 268
Target Start/End: Complemental strand, 12473875 - 12473699
Alignment:
Q  92 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 191  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||       ||||||||||||| ||||||||||     
T  12473875 atagcacttgtgtaccataatggtatataccattgctcaattagaatgtgtcatgtgccacaccctttaaaaaaatatatcaaataaagcatctataaag 12473776  T
Q  192 taacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggtatcc 268  Q
    ||||||||||||||| || ||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  12473775 taacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtatacaagtggtatcc 12473699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 92 - 268
Target Start/End: Complemental strand, 12528284 - 12528108
Alignment:
Q  92 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 191  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||       ||||||||||||| ||||||||||     
T  12528284 atagcacttgtgtaccataatggtatataccattgctcaattagaatgtgtcatgtgccacaccctttaaaaaaatatatcaaataaagcatctataaag 12528185  T
Q  192 taacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggtatcc 268  Q
    ||||||||||||||| || ||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  12528184 taacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtatacaagtggtatcc 12528108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 96 - 263
Target Start/End: Original strand, 35869575 - 35869742
Alignment:
Q  96 cacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaataac 195  Q
    ||||||| ||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||       ||||||||||||| ||| |||| | ||||    
T  35869575 cacttgtctaccataatggtatataccattgttcaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacatttatatagtaac 35869674  T
Q  196 attggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtgg 263  Q
    ||||||||||| || | ||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  35869675 attggtaggtggcacattataattggtcaatggtatataccattggtaccttaatggtacacaagtgg 35869742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 100 - 263
Target Start/End: Complemental strand, 22343500 - 22343337
Alignment:
Q  100 tgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaataacattg 199  Q
    ||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| |||||       ||||||||||||| ||| |||||| ||||||||    
T  22343500 tgtgtaccataatggtatatatcattgttcaattagaatgtgtcatgtggcacatcctttaaaataatatatcaaataaagcatttataaagtaacattg 22343401  T
Q  200 gtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtgg 263  Q
     ||| ||||| ||| ||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  22343400 atagatgacacactctaattggtcaatgatatataccattgataccttaatggtacacaagtgg 22343337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 106 - 268
Target Start/End: Complemental strand, 21260951 - 21260789
Alignment:
Q  106 ccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaataacattggtaggt 205  Q
    ||||||| ||||||| |||| | ||||||||||||| |||||||||||||||||       ||||||||||||| ||| |||||| ||||||||||||||    
T  21260951 ccataatggtatataacattacccaattagaatgtgccatgtggcacaccctttaaaaaaatatatcaaataaaacatttataaagtaacattggtaggt 21260852  T
Q  206 gacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggtatcc 268  Q
    |||| ||| |||||||||||||||||||| ||||||||||||||||||| | |||||| ||||    
T  21260851 gacacactctaattggccaatgatatatatcattggtaccttaatggtatataagtggaatcc 21260789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 115 - 262
Target Start/End: Original strand, 33249397 - 33249544
Alignment:
Q  115 tatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaataacattggtaggtgacatacta 214  Q
    |||||| ||||||||||||||| |||| |||||||||||||||||       ||||||||||||| ||| |||||| |||||||||||||||||| |||     
T  33249397 tatatatcattgctcaattagattgtgccatgtggcacaccctttaaaaatatatatcaaataaagcatttataaagtaacattggtaggtgacacactc 33249496  T
Q  215 taattggccaatgatatataccattggtaccttaatggtacacaagtg 262  Q
    ||||||||||||  ||||||||||| ||||||||||||||||||||||    
T  33249497 taattggccaattgtatataccatttgtaccttaatggtacacaagtg 33249544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 92 - 268
Target Start/End: Complemental strand, 55590642 - 55590477
Alignment:
Q  92 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 191  Q
    |||||||||| |||||||||| |||||| ||||||| |||||||||||||||| |||||||| |||||       |||||||||||||                
T  55590642 atagcacttgcgtaccataatggtatattccattgcccaattagaatgtgtcacgtggcacatcctttaaaaaagtatatcaaataaag----------- 55590554  T
Q  192 taacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggtatcc 268  Q
    |||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||    
T  55590553 taacattggtaggtgacacactataattgatcaatgatatataccattggtaccttaatggtacacaagtggaatcc 55590477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 96 - 268
Target Start/End: Complemental strand, 51812081 - 51811909
Alignment:
Q  96 cacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaataac 195  Q
    ||||||| || |||||| ||||||||||||   ||||||||||||||||  |||||||||||||       ||||||||| |||  || |||||| ||||    
T  51812081 cacttgtatatcataatggtatataccattatccaattagaatgtgtcacatggcacaccctttaaaaaaatatatcaaaaaaaaaatttataaagtaac 51811982  T
Q  196 attggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggtatcc 268  Q
    ||||||||||| |||||| |||||||||||| ||||||| | ||| |||||||||||||||| ||||| ||||    
T  51811981 attggtaggtggcatactctaattggccaataatatatatctttgataccttaatggtacacgagtggaatcc 51811909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 92 - 268
Target Start/End: Original strand, 52910050 - 52910225
Alignment:
Q  92 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 191  Q
    ||||||||| |||||||| || ||||||||||||| ||||||||  |||| || |||||| ||| |||       | ||||||||||| ||| ||||||     
T  52910050 atagcacttatgtaccattatggtatataccattgatcaattagggtgtgccacgtggcataccttttaatttttt-tatcaaataaagcatttataaag 52910148  T
Q  192 taacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggtatcc 268  Q
    ||| ||||||||||| || ||| ||||||||||||| |||||| |||||||||| | |||||||||||||| |||||    
T  52910149 taatattggtaggtggcacactttaattggccaatggtatataacattggtaccattatggtacacaagtgttatcc 52910225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 167 - 264
Target Start/End: Complemental strand, 52012874 - 52012777
Alignment:
Q  167 tatatcaaataaatcatctataaaataacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggt 264  Q
    ||||||||||||| ||| |||||| ||||||||||| ||| || ||| | ||||| ||||| |||||| |||||||||||||||||||||||||||||    
T  52012874 tatatcaaataaaacatttataaagtaacattggtatgtggcacacttttattggtcaatgttatataacattggtaccttaatggtacacaagtggt 52012777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 167 - 269
Target Start/End: Original strand, 49999663 - 49999765
Alignment:
Q  167 tatatcaaataaatcatctataaaataacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggtat 266  Q
    ||||||||||||| ||| |||||||||||||||||| |||||| ||| |||||| ||||||| | ||| |||| ||| ||| |||||||||||||| |||    
T  49999663 tatatcaaataaagcatttataaaataacattggtatgtgacacactctaattgaccaatgacacataacattagtatcttgatggtacacaagtgttat 49999762  T
Q  267 cca 269  Q
    |||    
T  49999763 cca 49999765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 185 - 262
Target Start/End: Original strand, 34829176 - 34829253
Alignment:
Q  185 tataaaataacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtg 262  Q
    |||||| |||||||||||||||||| ||| |||||||||| ||||||||| ||||||||||||||| ||||| |||||    
T  34829176 tataaagtaacattggtaggtgacacactttaattggccattgatatatatcattggtaccttaatagtacataagtg 34829253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 167 - 265
Target Start/End: Original strand, 9799438 - 9799536
Alignment:
Q  167 tatatcaaataaatcatctataaaataacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggta 265  Q
    ||||| ||||||| ||| |||||| ||||||||||| ||| || | | |  |||| ||||| |||||| ||||||||||||||||||| ||||||||||    
T  9799438 tatattaaataaaacatttataaagtaacattggtatgtggcacattcttgttggtcaatgttatataacattggtaccttaatggtatacaagtggta 9799536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 49998530 - 49998477
Alignment:
Q  215 taattggccaatgatatataccattggtaccttaatggtacacaagtggtatcc 268  Q
    ||||||||||||||||||||  ||||||||||||||||||||||| || |||||    
T  49998530 taattggccaatgatatataatattggtaccttaatggtacacaaatgctatcc 49998477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 151
Target Start/End: Complemental strand, 35781076 - 35781021
Alignment:
Q  96 cacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggca 151  Q
    |||||| |||||||||| |||||||||||||| ||||||||||||| || ||||||    
T  35781076 cacttgcgtaccataatggtatataccattgcccaattagaatgtgccacgtggca 35781021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 115; Significance: 3e-58; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 275 - 441
Target Start/End: Original strand, 38095172 - 38095338
Alignment:
Q  275 cttccttatccaattctacaaaagcaacattaaggaattcatccaactttattatgttgatgtgaattaaaatcgcttccttcatcctaaaattgaatat 374  Q
    ||||||| || |||| | |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  38095172 cttccttctctaattgtccaaaagcaacattaagcaattcatccaactttattatgttgatgtgaattacaatcgcttccttcatcctaaaattgaatat 38095271  T
Q  375 ttattatgtttagacatcaaacttcacgccttaaaagctaaggttttatctcagatttttccattaa 441  Q
    |||| | |||||| ||||||||||||||||| ||||||||||||||||| |||| | ||||||||||    
T  38095272 ttatcacgtttaggcatcaaacttcacgcctcaaaagctaaggttttatttcaggtctttccattaa 38095338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 92 - 268
Target Start/End: Complemental strand, 48250327 - 48250149
Alignment:
Q  92 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtca--tgtggcacaccctttnnnnnnntatatcaaataaatcatctataa 189  Q
    ||||||||||||||||||||| |||||||||||||  ||||||||||||| ||  ||| ||| |||||||        |||||||||||| |||||||||    
T  48250327 atagcacttgtgtaccataatggtatataccattgtccaattagaatgtgacacatgtagcataccctttaaaaaaaaatatcaaataaagcatctataa 48250228  T
Q  190 aataacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggtatcc 268  Q
    | ||||||||||||||| || ||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  48250227 agtaacattggtaggtggcacactctaattgaccaatgatatatatcattggtaccttaatggtacacaagtggtatcc 48250149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 87 - 268
Target Start/End: Complemental strand, 35341712 - 35341531
Alignment:
Q  87 ttcgaatagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatcta 186  Q
    |||| ||| ||||| | |||||||||  |||||| |||||  |||||||||||||||| ||||||||||||||       ||||||||||||| ||| ||    
T  35341712 ttcggataacacttatctaccataatgatatatatcattgtccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacattta 35341613  T
Q  187 taaaataacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggtatcc 268  Q
    |||| ||||||||||||||| || ||||||||||| ||||| |||||| |||||||||||||||||||||||||||| ||||    
T  35341612 taaagtaacattggtaggtggcacactataattggtcaatggtatatatcattggtaccttaatggtacacaagtggaatcc 35341531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 92 - 263
Target Start/End: Complemental strand, 48072558 - 48072389
Alignment:
Q  92 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 191  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||| || ||||||||||||||       || ||||||||||  || |||||||    
T  48072558 atagcacttgtgtaccataatggtatataccattgcccaattagaatgtgccacgtggcacaccctttaaaaaaatacatcaaataaaatatttataaaa 48072459  T
Q  192 taacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtgg 263  Q
    ||||||||  | ||| || ||| ||||||  |||||   ||||| |||||||||||||| ||||||||||||    
T  48072458 taacattgaaatgtggcacactctaattgatcaatg--gtatactattggtaccttaatagtacacaagtgg 48072389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 92 - 199
Target Start/End: Original strand, 32694570 - 32694677
Alignment:
Q  92 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 191  Q
    ||||||||||||||| ||||| ||||||||||||||  ||||||||||||||| ||||||||||||||       |||||||||||||  || ||||||     
T  32694570 atagcacttgtgtactataatggtatataccattgcctaattagaatgtgtcacgtggcacaccctttaaaaaaatatatcaaataaagaatttataaag 32694669  T
Q  192 taacattg 199  Q
    ||||||||    
T  32694670 taacattg 32694677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 38095101 - 38095153
Alignment:
Q  16 attattcttcatcctcttgaatttggtttatctagtttttcaacctagaattt 68  Q
    |||||||||||||||||||||||||||||||| | |||||||||||| |||||    
T  38095101 attattcttcatcctcttgaatttggtttatccaatttttcaacctaaaattt 38095153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 170 - 259
Target Start/End: Original strand, 31306951 - 31307041
Alignment:
Q  170 atcaaataaatcatctataaaataacattggtaggtgacatactataa-ttggccaatgatatataccattggtaccttaatggtacacaa 259  Q
    |||||||||| ||| |||||| ||||||||||||||  || ||| ||| |||| |||||||||||| ||||| ||| ||||||||||||||    
T  31306951 atcaaataaagcatttataaagtaacattggtaggtagcacactttaaattggacaatgatatatatcattgatactttaatggtacacaa 31307041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 209
Target Start/End: Complemental strand, 40856524 - 40856485
Alignment:
Q  170 atcaaataaatcatctataaaataacattggtaggtgaca 209  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  40856524 atcaaataaaacatctataaaataacattggtaggtgaca 40856485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 108 - 159
Target Start/End: Complemental strand, 40857000 - 40856949
Alignment:
Q  108 ataatagtatataccattgctcaattagaatgtgtcatgtggcacacccttt 159  Q
    ||||| ||||||| |||||  |||||||||||||||||||||||||||||||    
T  40857000 ataatggtatatatcattgtccaattagaatgtgtcatgtggcacacccttt 40856949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 199 - 268
Target Start/End: Complemental strand, 40856456 - 40856387
Alignment:
Q  199 ggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggtatcc 268  Q
    ||||||||||| ||| ||||||  |||| ||||||| |||| ||||||||||| |||| |||||||||||    
T  40856456 ggtaggtgacacactctaattgatcaataatatatatcattagtaccttaatgatacataagtggtatcc 40856387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 270
Target Start/End: Original strand, 40893116 - 40893220
Alignment:
Q  167 tatatcaaataaat-catctataaaataacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggta 265  Q
    |||||||||||||  ||| |||||| |||||||| ||| ||| | | | |||||| |||||| |||||||||||  ||| || |||||| ||||||||||    
T  40893116 tatatcaaataaaagcatttataaagtaacattgatagatgagacattctaattgaccaatggtatataccattaatactttgatggtatacaagtggta 40893215  T
Q  266 tccac 270  Q
    |||||    
T  40893216 tccac 40893220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 7e-53; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 92 - 258
Target Start/End: Original strand, 33858538 - 33858704
Alignment:
Q  92 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 191  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||       ||||||||||||| ||| ||||||     
T  33858538 atagcacttgtgtaccataatggtatataccattgcccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacatttataaag 33858637  T
Q  192 taacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacaca 258  Q
    ||||||||||||||| || ||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  33858638 taacattggtaggtggcacactataattggtcaatgatatatactattggtaccttaatggtacaca 33858704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 92 - 268
Target Start/End: Original strand, 11607534 - 11607710
Alignment:
Q  92 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 191  Q
    |||||||||||||||||||||  ||||||||||||  ||||||||||||| |  ||||||||||||||       ||||||||||||| ||| ||||||     
T  11607534 atagcacttgtgtaccataatgatatataccattgtccaattagaatgtggcccgtggcacaccctttaaaaaagtatatcaaataaaacatttataaag 11607633  T
Q  192 taacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggtatcc 268  Q
    ||| ||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||||| |||||||| ||||    
T  11607634 taatattggtaggtggcacactataattggtcaatggtatataccattggtaccttaatggtatacaagtggaatcc 11607710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 92 - 263
Target Start/End: Original strand, 19357262 - 19357432
Alignment:
Q  92 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 191  Q
    ||||||||||||||||||||| ||||||| |||||  |||||||||||||||| |||| ||| |||||       ||||||||||||| ||| ||||||     
T  19357262 atagcacttgtgtaccataatggtatatatcattgtccaattagaatgtgtcacgtgggacatcctttaaaaaa-tatatcaaataaagcatttataaag 19357360  T
Q  192 taacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtgg 263  Q
    ||| ||||||||||| || ||| ||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  19357361 taatattggtaggtggcacactctaattggccaatggtatataccattggtaccctaatggtacacaagtgg 19357432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 96 - 268
Target Start/End: Complemental strand, 1826426 - 1826254
Alignment:
Q  96 cacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaataac 195  Q
    |||||||||| ||||||  |||||| ||||| ||||||| |||||| |||||||||||  ||||       ||||||||||||| |||||| ||| |||     
T  1826426 cacttgtgtatcataatgatatatatcattgttcaattaaaatgtgccatgtggcacatactttaaaaaaatatatcaaataaagcatctacaaagtaat 1826327  T
Q  196 attggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggtatcc 268  Q
    |||||||||||||| ||| |||||| |||||| |||||||||||||||| |||||||||||||||||||||||    
T  1826326 attggtaggtgacacactctaattgaccaatggtatataccattggtactttaatggtacacaagtggtatcc 1826254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 129 - 268
Target Start/End: Original strand, 39570080 - 39570219
Alignment:
Q  129 caattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaataacattggtaggtgacatactataattggccaatga 228  Q
    |||||||||| ||||| ||||||||||||||       ||||||||||||| ||| |||||| |||||||||||||||||| ||| |||||||||||||     
T  39570080 caattagaatatgtcaggtggcacaccctttaaaaaagtatatcaaataaaacatttataaagtaacattggtaggtgacacactctaattggccaatgg 39570179  T
Q  229 tatataccattggtaccttaatggtacacaagtggtatcc 268  Q
    |||||||||||| ||| |||||| ||||||||||| ||||    
T  39570180 tatataccattgatactttaatgatacacaagtggaatcc 39570219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 92 - 247
Target Start/End: Complemental strand, 33271785 - 33271630
Alignment:
Q  92 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 191  Q
    ||||||||| ||||||||||| |||||||| ||||| ||||||||||||| || ||||| || |||||       ||||||||||||| ||| ||| ||     
T  33271785 atagcacttatgtaccataatggtatatactattgcccaattagaatgtgccacgtggcgcatcctttaaaaaaatatatcaaataaagcatttatcaag 33271686  T
Q  192 taacattggtaggtgacatactataattggccaatgatatataccattggtacctt 247  Q
    |||||||| ||| ||||| ||| |||||||||||||||||||| ||||||||||||    
T  33271685 taacattgatagatgacacactctaattggccaatgatatatatcattggtacctt 33271630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 167 - 268
Target Start/End: Complemental strand, 13015477 - 13015376
Alignment:
Q  167 tatatcaaataaatcatctataaaataacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggtat 266  Q
    |||||||||||||  || |||||| ||||||||||| ||| || ||| | ||||| ||||| |||||| |||||||||||||||||||||||||||||||    
T  13015477 tatatcaaataaaatatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtggtat 13015378  T
Q  267 cc 268  Q
    ||    
T  13015377 cc 13015376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 167 - 264
Target Start/End: Original strand, 38010689 - 38010786
Alignment:
Q  167 tatatcaaataaatcatctataaaataacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggt 264  Q
    |||||||||||||  || |||||| ||||||||||| ||| || ||| | ||||||||||| |||||| |||||||||||||||||||||||||||||    
T  38010689 tatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggccaatgttatataacattggtaccttaatggtacacaagtggt 38010786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 168 - 264
Target Start/End: Complemental strand, 13086848 - 13086752
Alignment:
Q  168 atatcaaataaatcatctataaaataacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggt 264  Q
    ||||||||||||  || |||||||||||||||||| ||| || ||| | ||||| ||||| |||||| |||||||||||||||||||||||||||||    
T  13086848 atatcaaataaaatatttataaaataacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtggt 13086752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 167 - 264
Target Start/End: Complemental strand, 29990058 - 29989961
Alignment:
Q  167 tatatcaaataaatcatctataaaataacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggt 264  Q
    ||||||||||||| ||| |||||| ||||||||||| ||| || ||| | ||||| ||||| |||||| ||||| |||||||||||||||||||||||    
T  29990058 tatatcaaataaaacatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattgataccttaatggtacacaagtggt 29989961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 167 - 269
Target Start/End: Complemental strand, 9827884 - 9827782
Alignment:
Q  167 tatatcaaataaatcatctataaaataacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggtat 266  Q
    |||||||||||||  || |||||| ||| |||||||||||  | ||| |||||| | || | ||||||||||||||||||||||||||||||||||| ||    
T  9827884 tatatcaaataaaatatttataaagtaatattggtaggtggtacactctaattgactaaaggtatataccattggtaccttaatggtacacaagtggaat 9827785  T
Q  267 cca 269  Q
    |||    
T  9827784 cca 9827782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 167 - 264
Target Start/End: Original strand, 13478120 - 13478217
Alignment:
Q  167 tatatcaaataaatcatctataaaataacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggt 264  Q
    |||||||||||||  || |||||| ||||| ||||| ||| || ||| | ||||| ||||| |||||| ||||||| |||||||||||||||||||||    
T  13478120 tatatcaaataaaatatttataaagtaacaatggtatgtggcacactcttattggtcaatgttatataacattggttccttaatggtacacaagtggt 13478217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 112 - 206
Target Start/End: Complemental strand, 42148297 - 42148203
Alignment:
Q  112 tagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaataacattggtaggtg 206  Q
    ||||||||||||||| ||||||||||||||  | |||| |||||||||       ||||||||||||| ||| |||||| |||||||||||||||    
T  42148297 tagtatataccattgttcaattagaatgtgcaacgtggtacaccctttaaaaaaatatatcaaataaaacatttataaagtaacattggtaggtg 42148203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 262
Target Start/End: Original strand, 13421085 - 13421180
Alignment:
Q  167 tatatcaaataaatcatctataaaataacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtg 262  Q
    ||||| ||||||| ||| |||||| |||||||| ||  ||| | ||| | ||||  ||||| |||||| ||||| |||||||||||||||||||||    
T  13421085 tatattaaataaagcatttataaagtaacattgatatttgatacactcttattgatcaatgttatataacattgataccttaatggtacacaagtg 13421180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 3e-52; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 275 - 403
Target Start/End: Complemental strand, 2758011 - 2757883
Alignment:
Q  275 cttccttatccaattctacaaaagcaacattaaggaattcatccaactttattatgttgatgtgaattaaaatcgcttccttcatcctaaaattgaatat 374  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||| || |||||||||    
T  2758011 cttccttctccaattctacaaaagcaacattaagcaattcatccaactttattatgttgatgtgaattaaaatcacttgcttcatccaaatattgaatat 2757912  T
Q  375 ttattatgtttagacatcaaacttcacgc 403  Q
    |||||||||||||||||||||||||||||    
T  2757911 ttattatgtttagacatcaaacttcacgc 2757883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 310 - 441
Target Start/End: Original strand, 26179317 - 26179448
Alignment:
Q  310 aattcatccaactttattatgttgatgtgaattaaaatcgcttccttcatcctaaaattgaatatttattatgtttagacatcaaacttcacgccttaaa 409  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| | |||||| ||||||||||||||||| |||    
T  26179317 aattcatccaactttattatgttgatgtgaattacaatcgcttccttcatcctaaaattgaatatctatcacgtttaggcatcaaacttcacgcctcaaa 26179416  T
Q  410 agctaaggttttatctcagatttttccattaa 441  Q
    |||||||||||||| |||| | ||||||||||    
T  26179417 agctaaggttttatttcaggtctttccattaa 26179448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 92 - 268
Target Start/End: Original strand, 34392081 - 34392257
Alignment:
Q  92 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 191  Q
    ||||||||||||||||||||| |||||||||||||  |||||||| |||| |||||||||||||||||       ||||||||||||| ||| ||||||     
T  34392081 atagcacttgtgtaccataatggtatataccattgtccaattagattgtgccatgtggcacaccctttaaaaaaatatatcaaataaagcatttataaag 34392180  T
Q  192 taacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggtatcc 268  Q
    ||| ||||||||||| || ||| ||||||||||||| |||||||||||||||||| |||||||||||||||| ||||    
T  34392181 taagattggtaggtggcacactctaattggccaatggtatataccattggtacctcaatggtacacaagtggaatcc 34392257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 167 - 269
Target Start/End: Complemental strand, 21604055 - 21603953
Alignment:
Q  167 tatatcaaataaatcatctataaaataacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggtat 266  Q
    ||||||||||||| ||| |||||| |||||||||||||||| | ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||    
T  21604055 tatatcaaataaaacatttataaagtaacattggtaggtgatacactataattggtcaatggtatataccattggtaccttaatggtacacaagtggaat 21603956  T
Q  267 cca 269  Q
    |||    
T  21603955 cca 21603953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 92 - 269
Target Start/End: Original strand, 23863803 - 23863985
Alignment:
Q  92 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 191  Q
    |||||||| ||||||||||||  |||||| |||||  ||||||||||||| |||||||||||||||||       ||||||||||||| ||| ||||||     
T  23863803 atagcactagtgtaccataatgatatatatcattgtccaattagaatgtgccatgtggcacaccctttaaaaatatatatcaaataaagcatttataaag 23863902  T
Q  192 taacattggtaggtgacatactataattggccaatgatatataccattggt-------accttaatggtacacaagtggtatcca 269  Q
    ||||||||||||||| || ||| |||||| |||||   |||||||||||||       |||||||||||||||||||||||||||    
T  23863903 taacattggtaggtggcacactctaattgaccaat--aatataccattggtaccttaaaccttaatggtacacaagtggtatcca 23863985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 2758080 - 2758008
Alignment:
Q  17 ttattcttcatcctcttgaatttggtttatctagtttttcaacctagaatttaagtttctatcacttcacttc 89  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||    
T  2758080 ttattcttcatcctcttgaatttggtttatctagtttttcaacttagaatttcagtttctatcaattcacttc 2758008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 92 - 269
Target Start/End: Complemental strand, 7381862 - 7381686
Alignment:
Q  92 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 191  Q
    |||| ||||| |||| ||||| |||||||| ||||| |||||| |||||||||  || |||| |||||       |||||||||||||  || ||||||     
T  7381862 atagaacttgcgtactataatggtatatactattgcccaattaaaatgtgtcacatgacacatcctttaaaaaa-tatatcaaataaagaatttataaag 7381764  T
Q  192 taacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggtatcca 269  Q
    |||||||||||| || || ||| ||||||||||||  |||||||||||||||||||||||||||||||| || |||||    
T  7381763 taacattggtagatggcacactctaattggccaatagtatataccattggtaccttaatggtacacaagcggaatcca 7381686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 92 - 268
Target Start/End: Original strand, 37357917 - 37358097
Alignment:
Q  92 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnnta----tatcaaataaatcatctat 187  Q
    |||||||||||||| ||||||||||||||||||||  |||||||||||||||| ||||||||   |||        |    ||| ||||||| ||| |||    
T  37357917 atagcacttgtgtatcataatagtatataccattgtccaattagaatgtgtcacgtggcacatagtttaaaaaaaaaaaaatattaaataaagcatttat 37358016  T
Q  188 aaaataacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggtatcc 268  Q
    ||| |||||||| ||||||||| ||| ||||| | ||||| |||||| |||||||||||||||| ||||||||||| ||||    
T  37358017 aaagtaacattgataggtgacacactctaattagtcaatggtatatatcattggtaccttaatgatacacaagtggaatcc 37358097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 99 - 270
Target Start/End: Complemental strand, 4775799 - 4775627
Alignment:
Q  99 ttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatcta-taaaataacat 197  Q
    |||||||||||||| |||||||||||||  |||||| | |||| ||||||||||| |||||       ||||| ||||||| ||  || |||| ||| ||    
T  4775799 ttgtgtaccataatggtatataccattgtccaattaaattgtgccatgtggcacatcctttaaaaaaatatattaaataaaacaattaataaagtaagat 4775700  T
Q  198 tggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggtatccac 270  Q
    |||||| ||| | | | |||||||||||| ||||||| |||||||| |||||||||||| |||||||| ||||    
T  4775699 tggtagatgagacattctaattggccaataatatatatcattggtagcttaatggtacataagtggtacccac 4775627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 96 - 240
Target Start/End: Complemental strand, 4779752 - 4779608
Alignment:
Q  96 cacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaataac 195  Q
    |||||||||| |||||| |||||||||||||  |||||||||||||||| ||| |||| |||||       |||||||||||||  || |||||| ||||    
T  4779752 cacttgtgtatcataatggtatataccattgtccaattagaatgtgtcacgtgacacatcctttaaaaaaatatatcaaataaagtatttataaagtaac 4779653  T
Q  196 attggtaggtgacatactataattggccaatgatatataccattg 240  Q
    |||| |||| | || ||||||| ||  ||||| ||||||| ||||    
T  4779652 attgttaggcggcacactataagtgatcaatggtatatactattg 4779608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 153
Target Start/End: Complemental strand, 21606210 - 21606149
Alignment:
Q  92 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcaca 153  Q
    ||||||||| |||| |||||| |||||||||||||  |||||||||||||||| ||||||||    
T  21606210 atagcacttctgtatcataatggtatataccattgtccaattagaatgtgtcacgtggcaca 21606149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 269
Target Start/End: Original strand, 14565946 - 14566030
Alignment:
Q  185 tataaaataacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggtatcca 269  Q
    |||||||||| ||||||| ||  || ||| || |||  |||||||||||| ||||||||||||| ||||||||| ||| ||||||    
T  14565946 tataaaataatattggtatgtagcacactctacttgatcaatgatatataacattggtaccttagtggtacacacgtgttatcca 14566030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 25275622 - 25275689
Alignment:
Q  92 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacacccttt 159  Q
    ||||||||| |||| |||||| ||||||| |||||  |||||||||||| ||| |||||||| |||||    
T  25275622 atagcacttctgtatcataatggtatatatcattgtccaattagaatgtatcacgtggcacatccttt 25275689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 34904304 - 34904357
Alignment:
Q  215 taattggccaatgatatataccattggtaccttaatggtacacaagtggtatcc 268  Q
    ||||| || ||||||||||| |||||||||||||||| |||| ||||| |||||    
T  34904304 taattagcaaatgatatataacattggtaccttaatgatacaaaagtgttatcc 34904357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 37811137 - 37811085
Alignment:
Q  217 attggccaatgatatataccattggtaccttaatggtacacaagtggtatcca 269  Q
    ||||||||||| |||||| |||||||| |  ||||||||||||||||| ||||    
T  37811137 attggccaatgttatataacattggtatcccaatggtacacaagtggtgtcca 37811085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 5e-51; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 294 - 444
Target Start/End: Original strand, 32019445 - 32019594
Alignment:
Q  294 aaaagcaacattaaggaattcatccaactttattatgttgatgtgaattaaaatcgcttccttcatcctaaaattgaatatttattatgtttagacatca 393  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||| |||||||||| || |||||||||    
T  32019445 aaaagcaacattaagcaattcatccaactttattatgtcgatgtgaattaaaatcacttccttcatccaaaaattg-atatttattacgtatagacatca 32019543  T
Q  394 aacttcacgccttaaaagctaaggttttatctcagatttttccattaagcc 444  Q
    |||||| ||||| |||||||||||||||||||||| | |||||||||||||    
T  32019544 aacttctcgcctcaaaagctaaggttttatctcaggtctttccattaagcc 32019594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 96 - 268
Target Start/End: Original strand, 41179567 - 41179739
Alignment:
Q  96 cacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaataac 195  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||| || ||       ||||| ||||||| ||| |||||| ||||    
T  41179567 cacttgtgtaccataatggtatataccattgcccaattagaatgtgccatgtggcacatccattaaaaaaatatattaaataaaacatttataaagtaac 41179666  T
Q  196 attggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggtatcc 268  Q
    || ||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  41179667 atcggtaggtgacacactttaattggccaatgatatatatcattggtaccttaatggtacacaagtggaatcc 41179739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 92 - 268
Target Start/End: Original strand, 24337830 - 24338006
Alignment:
Q  92 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 191  Q
    ||||||||||||||||||||| |||||||||||||  |||||||||||||  ||||||||||||||||       ||||||||||||| ||||||||||     
T  24337830 atagcacttgtgtaccataatggtatataccattgtccaattagaatgtgctatgtggcacaccctttaaaaatatatatcaaataaagcatctataaag 24337929  T
Q  192 taacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggtatcc 268  Q
    |||||||||||| || || ||| |||||| || ||| |||||||||||| ||||||||| |||||||||||||||||    
T  24337930 taacattggtagatggcacactctaattgaccgatggtatataccattgctaccttaatagtacacaagtggtatcc 24338006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 92 - 263
Target Start/End: Original strand, 11254028 - 11254198
Alignment:
Q  92 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 191  Q
    |||||| |||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||       ||||||||||||| ||| ||||||     
T  11254028 atagcatttgtgtaccataatggtatataccattgctcagttagaatgtgtcacgtggcacaccctttaaaaatgtatatcaaataaaacatttataaag 11254127  T
Q  192 taacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtgg 263  Q
    |||||||||||||||  ||||||||| ||| |||||||||||| ||||||||  ||||||||||||||||||    
T  11254128 taacattggtaggtggtatactataa-tggtcaatgatatatatcattggtaatttaatggtacacaagtgg 11254198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 118 - 255
Target Start/End: Original strand, 4708333 - 4708470
Alignment:
Q  118 ataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaataacattggtaggtgacatactataa 217  Q
    ||||||||||  |||||||||||| || ||||||||||||||       ||||||||||||| ||| |||||| |||||||||||||||||| ||| |||    
T  4708333 ataccattgcctaattagaatgtgccacgtggcacaccctttaaaaatatatatcaaataaaacatttataaagtaacattggtaggtgacacactttaa 4708432  T
Q  218 ttggccaatgatatataccattggtaccttaatggtac 255  Q
    |||||  ||||||||| |||||||||||||| ||||||    
T  4708433 ttggcgcatgatatatgccattggtaccttagtggtac 4708470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 32019354 - 32019428
Alignment:
Q  15 aattattcttcatcctcttgaatttggtttatctagtttttcaacctagaatttaagtttctatcacttcacttc 89  Q
    ||||||||||||||||||| |||||||||||||||||||||||||  ||||||| ||||||||||| ||||||||    
T  32019354 aattattcttcatcctcttcaatttggtttatctagtttttcaacaaagaatttcagtttctatcaattcacttc 32019428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 137 - 262
Target Start/End: Original strand, 32825880 - 32826005
Alignment:
Q  137 atgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaataacattggtaggtgacatactataattggccaatgatatatacc 236  Q
    |||||||||||| |||| |||||       ||||||||||||| ||  ||||||||||||||| || |||||||||| ||||||||||||| |||| | |    
T  32825880 atgtgtcatgtgacacaaccttttaaaaaatatatcaaataaaacacatataaaataacattgatatgtgacatactctaattggccaatggtatacaac 32825979  T
Q  237 attggtaccttaatggtacacaagtg 262  Q
    |||| ||| |||||||||||||||||    
T  32825980 attgatactttaatggtacacaagtg 32826005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 100 - 265
Target Start/End: Complemental strand, 18168549 - 18168383
Alignment:
Q  100 tgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnn-tatatcaaataaatcatctataaaataacatt 198  Q
    ||||||||||||| |||||||  ||| |  ||||||| ||||||| |||||||| |||||        |||||||||||||  || |||||| ||| |||    
T  18168549 tgtgtaccataatggtatatattattacctaattagattgtgtcacgtggcacatcctttaaaaaaaatatatcaaataaagtatttataaagtaagatt 18168450  T
Q  199 ggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggta 265  Q
    ||||||||  | ||| ||||||  |||||||||||||||||||||||||||||||||| | ||||||    
T  18168449 ggtaggtgggacactctaattgatcaatgatatataccattggtaccttaatggtacagaggtggta 18168383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 100 - 265
Target Start/End: Complemental strand, 18632106 - 18631940
Alignment:
Q  100 tgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnn-tatatcaaataaatcatctataaaataacatt 198  Q
    ||||||||||||| |||||||  ||| |  ||||||| ||||||| |||||||| |||||        |||||||||||||  || |||||| ||| |||    
T  18632106 tgtgtaccataatggtatatattattacctaattagattgtgtcacgtggcacatcctttaaaaaaaatatatcaaataaagtatttataaagtaagatt 18632007  T
Q  199 ggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggta 265  Q
    ||||||||  | ||| ||||||  |||||||||||||||||||||||||||||||||| | ||||||    
T  18632006 ggtaggtgggacactctaattgatcaatgatatataccattggtaccttaatggtacagaggtggta 18631940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 167 - 264
Target Start/End: Complemental strand, 1514899 - 1514802
Alignment:
Q  167 tatatcaaataaatcatctataaaataacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggt 264  Q
    ||||||||||||| ||| |||||| ||||||||||| |||  | ||| | ||||  ||||| |||||| |||||||||||||||||||||||||||||    
T  1514899 tatatcaaataaaacatttataaagtaacattggtatgtggtacactcttattgatcaatgttatataacattggtaccttaatggtacacaagtggt 1514802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 3e-49; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 92 - 268
Target Start/End: Original strand, 29119324 - 29119500
Alignment:
Q  92 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 191  Q
    |||||| |||||||||||||  |||||||| ||||| ||||||||||||| |||||||||||||||||       ||||||||||||| ||||||||||     
T  29119324 atagcatttgtgtaccataagggtatatacaattgcccaattagaatgtgccatgtggcacaccctttaaaaaaatatatcaaataaagcatctataaag 29119423  T
Q  192 taacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggtatcc 268  Q
    ||||| || |||||| || ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29119424 taacaatgataggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggtatcc 29119500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 94 - 269
Target Start/End: Complemental strand, 32676305 - 32676130
Alignment:
Q  94 agcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaata 193  Q
    |||| |||||||| ||||| |||||||||||||  |||||||| |||| |||||||||||  ||||       ||||||||||||| ||| |||||| ||    
T  32676305 agcatttgtgtactataatggtatataccattgtccaattagattgtgccatgtggcacatgctttaaaaaaatatatcaaataaagcatttataaagta 32676206  T
Q  194 acattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggtatcca 269  Q
    |||||||||||||    | | ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  32676205 acattggtaggtggtgcattctaattggccaatggtatataccattggtaccttaatggtacacaagtggaatcca 32676130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 92 - 268
Target Start/End: Original strand, 46435465 - 46435629
Alignment:
Q  92 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 191  Q
    |||| |||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||       ||||||||||||| |||||||||      
T  46435465 ataggacttgtgtaccataatggtatataccattgcccaattagaatgtgtcatgtgacacaccctttaaaaatatatatcaaataaagcatctataa-- 46435562  T
Q  192 taacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggtatcc 268  Q
              |||||||  ||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  46435563 ----------aggtgacgcactctaattggccaattgtatataccattggtaccttaatggtacacaagtggtatcc 46435629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 92 - 263
Target Start/End: Complemental strand, 2569207 - 2569037
Alignment:
Q  92 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 191  Q
    |||||||||||||| ||||||  ||||||| |||||  |||||||||||| ||  |||||||||||||       ||||||||||||| |||   |||      
T  2569207 atagcacttgtgtaacataatgatatatactattgcctaattagaatgtgccacatggcacaccctttaaaaaa-tatatcaaataaagcattggtaatg 2569109  T
Q  192 taacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtgg 263  Q
    ||||||||||||||| || ||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2569108 taacattggtaggtggcacactctaattggcaaatgatatataccattggtaccttaatggtacacaagtgg 2569037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 112 - 268
Target Start/End: Complemental strand, 8462279 - 8462124
Alignment:
Q  112 tagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaataacattggtaggtgacata 211  Q
    |||||||||||||||  |||||| ||||||||| ||||||| ||||||       ||||| ||||||| ||| |||||||||||||||||||||| || |    
T  8462279 tagtatataccattgtccaattaaaatgtgtcacgtggcacgccctttaaaaaagtatattaaataaaacatttataaaataacattggtaggtggcaca 8462180  T
Q  212 ctataattggccaatgatatataccattggtaccttaatggtacacaagtggtatcc 268  Q
    |||||||||  |||||||||||||||||||||| |||||  ||||||||||| ||||    
T  8462179 ctataattgatcaatgatatataccattggtactttaat-atacacaagtggaatcc 8462124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 89 - 264
Target Start/End: Original strand, 8809636 - 8809812
Alignment:
Q  89 cgaatagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnn-tatatcaaataaatcatctat 187  Q
    ||||||||||||||||||||| ||  |||||| ||||   ||||||   |||| |||||||||||| ||||        ||||||||||||| ||| |||    
T  8809636 cgaatagcacttgtgtaccattatgttatataacattagccaattaaggtgtgacatgtggcacacactttaaaaaacatatatcaaataaaacatttat 8809735  T
Q  188 aaaataacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggt 264  Q
    ||| ||||||||||| ||| || ||| | ||||| ||||| |||||| |||||||||||||||||||||||||||||    
T  8809736 aaagtaacattggtacgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtggt 8809812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 170 - 268
Target Start/End: Complemental strand, 25161402 - 25161304
Alignment:
Q  170 atcaaataaatcatctataaaataacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggtatcc 268  Q
    |||||||||| ||| |||||| |||||||| |||||| || ||| ||||||| ||||| ||||||||||||  || |||||||||||||||||| ||||    
T  25161402 atcaaataaaacatttataaagtaacattgttaggtggcacactgtaattggtcaatggtatataccattgagactttaatggtacacaagtggaatcc 25161304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 262
Target Start/End: Complemental strand, 6223147 - 6223052
Alignment:
Q  167 tatatcaaataaatcatctataaaataacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtg 262  Q
    |||||||||||||  |  ||||||||||||||| ||  ||||| ||  ||||||  |||||||||||| ||||| ||| |||||||||||||||||    
T  6223147 tatatcaaataaaatacttataaaataacattgatatatgacacaccttaattgatcaatgatatataacattgatactttaatggtacacaagtg 6223052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 259
Target Start/End: Original strand, 7214520 - 7214578
Alignment:
Q  201 taggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaa 259  Q
    ||||||||| ||| |||||| ||||| |||||||| ||| |||||||||||||||||||    
T  7214520 taggtgacacactctaattgaccaataatatatactattagtaccttaatggtacacaa 7214578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 167 - 264
Target Start/End: Complemental strand, 35998348 - 35998251
Alignment:
Q  167 tatatcaaataaatcatctataaaataacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggt 264  Q
    ||||| ||||||| ||  ||||||||||||||| || ||| || ||| | |||   ||||| |||||| ||||||||||||||||||| |||||||||    
T  35998348 tatataaaataaaacacttataaaataacattgatatgtggcacactcttattaatcaatgttatataacattggtaccttaatggtatacaagtggt 35998251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 267
Target Start/End: Original strand, 16679835 - 16679873
Alignment:
Q  229 tatataccattggtaccttaatggtacacaagtggtatc 267  Q
    |||||| ||||||||||||||||||||||||||| ||||    
T  16679835 tatataacattggtaccttaatggtacacaagtgctatc 16679873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 4e-48; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 276 - 441
Target Start/End: Original strand, 47955629 - 47955793
Alignment:
Q  276 ttccttatccaattctacaaaagcaacattaaggaattcatccaactttattatgttgatgtgaattaaaatcgcttccttcatcctaaaattgaatatt 375  Q
    |||||| ||||||||| ||||||| || ||||| ||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  47955629 ttccttctccaattctgcaaaagccacgttaagcaattcatccaattttattatgttgatgtgaattacaatcacttccttcatcctaaaattgaatatt 47955728  T
Q  376 tattatgtttagacatcaaacttcacgccttaaaagctaaggttttatctcagatttttccattaa 441  Q
    | ||||||| || ||||||||||||||||| ||||||| ||||||||| |||| | ||||||||||    
T  47955729 ttttatgttgag-catcaaacttcacgcctcaaaagctgaggttttatttcagttctttccattaa 47955793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 96 - 269
Target Start/End: Complemental strand, 44380421 - 44380248
Alignment:
Q  96 cacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaataac 195  Q
    ||||||||||||||||| |||||||||||||  |||||||||||||||| ||||||||||||||       ||||||||||||| ||| |||||| |||     
T  44380421 cacttgtgtaccataatggtatataccattgtccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaagcatttataaagtaat 44380322  T
Q  196 attggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggtatcca 269  Q
    |||| ||||||||| ||||||||||| ||||  ||||||||||||||||||||||||||||||||||| |||||    
T  44380321 attgataggtgacacactataattggtcaatagtatataccattggtaccttaatggtacacaagtggaatcca 44380248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 117 - 268
Target Start/End: Complemental strand, 47426496 - 47426345
Alignment:
Q  117 tataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaataacattggtaggtgacatactata 216  Q
    ||||||||||| ||||||||||||  |||||||||||||||||       ||||||||||||| |||||||||| |||||||| ||||||||| ||| ||    
T  47426496 tataccattgcccaattagaatgtaccatgtggcacaccctttaaaaaaatatatcaaataaagcatctataaagtaacattgataggtgacacactcta 47426397  T
Q  217 attggccaatgatatataccattggtaccttaatggtacacaagtggtatcc 268  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  47426396 attggccaatggtatatactattggtaccttaatggtacacaagtggtatcc 47426345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 91 - 268
Target Start/End: Complemental strand, 33509852 - 33509675
Alignment:
Q  91 aatagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaa 190  Q
    |||||||||||||||| ||||| ||||||| |||||   |||||||||||| ||||||||||| |||||       || |||||||||| ||||||||||    
T  33509852 aatagcacttgtgtacaataatggtatatatcattgtctaattagaatgtgccatgtggcacatcctttaaaaaaatacatcaaataaagcatctataaa 33509753  T
Q  191 ataacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggtatcc 268  Q
     ||| ||||||||||| || ||| ||||||| ||||||||||||| ||| ||||||||||||||||||| || |||||    
T  33509752 gtaatattggtaggtggcacactctaattggtcaatgatatatactattagtaccttaatggtacacaaatgatatcc 33509675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 92 - 250
Target Start/End: Complemental strand, 37742896 - 37742738
Alignment:
Q  92 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 191  Q
    |||||||||||||| |||||| |||||||||||||| |||||| |||||| || ||||||||| ||||       ||||||||||||| |||   |||      
T  37742896 atagcacttgtgtaacataatggtatataccattgcccaattataatgtgccacgtggcacactctttaaaaaaatatatcaaataaagcattggtaatg 37742797  T
Q  192 taacattggtaggtgacatactataattggccaatgatatataccattggtaccttaat 250  Q
    ||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||    
T  37742796 taacattggtaggtggcatactctaattgaccaatgatatataccattggtaccttaat 37742738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 114 - 261
Target Start/End: Original strand, 39498692 - 39498838
Alignment:
Q  114 gtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaataacattggtaggtgacatact 213  Q
    |||||||| |||||||||||||||||||||| |||||||| |||||       ||||| |||||||  || ||||||||||||| | ||||||||| |||    
T  39498692 gtatatactattgctcaattagaatgtgtcacgtggcacatcctttaaaaat-tatattaaataaaatatttataaaataacatcgataggtgacacact 39498790  T
Q  214 ataattggccaatgatatataccattggtaccttaatggtacacaagt 261  Q
     |||||| ||||| ||||||| ||||||||| ||||||||||||||||    
T  39498791 ttaattgaccaataatatatatcattggtactttaatggtacacaagt 39498838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 99 - 240
Target Start/End: Complemental strand, 17466437 - 17466296
Alignment:
Q  99 ttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaataacatt 198  Q
    ||||||||| |||| ||||||||||||||||| ||||| ||||  | |||||| |||||||       |||||||| |||||||| |||||| |||||||    
T  17466437 ttgtgtaccgtaatggtatataccattgctcagttagattgtggtacgtggcataccctttaaaaaaatatatcaactaaatcatttataaagtaacatt 17466338  T
Q  199 ggtaggtgacatactataattggccaatgatatataccattg 240  Q
    | ||||||||| ||| |||||| |||||||||||||||||||    
T  17466337 gataggtgacacactctaattgaccaatgatatataccattg 17466296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 167 - 262
Target Start/End: Complemental strand, 50934596 - 50934501
Alignment:
Q  167 tatatcaaataaatcatctataaaataacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtg 262  Q
    ||||||||||||  ||| |||||| ||||||||||| ||| || ||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  50934596 tatatcaaataatgcatttataaagtaacattggtaagtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 50934501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 94 - 268
Target Start/End: Complemental strand, 35094717 - 35094541
Alignment:
Q  94 agcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaata 193  Q
    |||| |||||||||||||| |||| || |||||  |||||||||||||||| ||| |||| |||||       |||||||||||||  || |||||| ||    
T  35094717 agcatttgtgtaccataatggtatgtatcattgtccaattagaatgtgtcacgtgacacatcctttaaaaaaatatatcaaataaaatatttataaagta 35094618  T
Q  194 acattggtaggtgacata--ctataattggccaatgatatataccattggtaccttaatggtacacaagtggtatcc 268  Q
    ||||||||||||| ||||  |||||||| | ||||| ||||||||| |||||| ||||||||||  |||||| ||||    
T  35094617 acattggtaggtggcatactctataattagtcaatggtatataccactggtactttaatggtactgaagtggaatcc 35094541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 167 - 269
Target Start/End: Complemental strand, 42664769 - 42664667
Alignment:
Q  167 tatatcaaataaatcatctataaaataacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggtat 266  Q
    ||||||||||||| ||| |||||||||||||||||| ||| || ||| | ||||| ||||| |||||| | ||||||||||||||||||||||||||| |    
T  42664769 tatatcaaataaaacatttataaaataacattggtatgtggcacactcttattggtcaatgttatataactttggtaccttaatggtacacaagtggtgt 42664670  T
Q  267 cca 269  Q
    |||    
T  42664669 cca 42664667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 167 - 264
Target Start/End: Complemental strand, 47186271 - 47186174
Alignment:
Q  167 tatatcaaataaatcatctataaaataacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggt 264  Q
    |||||||||||||  || |||||| ||||||||||| ||| || ||| | ||||||||||| |||||| |||||||||||||||||||||||||||||    
T  47186271 tatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggccaatgttatataacattggtaccttaatggtacacaagtggt 47186174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 47955557 - 47955617
Alignment:
Q  15 aattattcttcatcctcttgaatttggtttatctagtttttcaacctagaatttaagtttc 75  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  47955557 aattattcttcatcctcttgaatttggtttatctattttttcaacctagaatttcagtttc 47955617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 167 - 269
Target Start/End: Original strand, 31187145 - 31187247
Alignment:
Q  167 tatatcaaataaatcatctataaaataacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggtat 266  Q
    ||||||||||||| ||| |||||| ||||||||||| ||| || ||| | ||||| ||||| |||||| ||||||||||||||||||||| ||||||| |    
T  31187145 tatatcaaataaaacatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacataagtggtgt 31187244  T
Q  267 cca 269  Q
    |||    
T  31187245 cca 31187247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 195 - 261
Target Start/End: Original strand, 32319468 - 32319534
Alignment:
Q  195 cattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagt 261  Q
    |||| ||||||| || ||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  32319468 catttgtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagt 32319534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 197 - 268
Target Start/End: Original strand, 10179868 - 10179939
Alignment:
Q  197 ttggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggtatcc 268  Q
    |||||||||| || ||| |||||| |||||| |||||||||||||||| |||||||||||||||||| ||||    
T  10179868 ttggtaggtggcacactctaattgaccaatggtatataccattggtactttaatggtacacaagtggaatcc 10179939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 167 - 264
Target Start/End: Original strand, 34029366 - 34029463
Alignment:
Q  167 tatatcaaataaatcatctataaaataacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggt 264  Q
    ||||||||||||| ||| |||||| ||||||| ||| ||| || ||| | ||||  ||||| |||||| ||||||||||||||||||| |||||||||    
T  34029366 tatatcaaataaaacatttataaagtaacattagtatgtggcacactcttattgatcaatgttatataacattggtaccttaatggtaaacaagtggt 34029463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 92 - 147
Target Start/End: Complemental strand, 19619269 - 19619214
Alignment:
Q  92 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgt 147  Q
    ||||||| ||||||||||||| |||||||||||||| |||||| ||||||||||||    
T  19619269 atagcacatgtgtaccataatggtatataccattgcccaattaaaatgtgtcatgt 19619214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 268
Target Start/End: Original strand, 10018671 - 10018742
Alignment:
Q  197 ttggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggtatcc 268  Q
    |||||||||| || ||| | |||| |||||| |||||| ||||||||| |||||||||||||||||| ||||    
T  10018671 ttggtaggtggcacacttttattgaccaatggtatataacattggtactttaatggtacacaagtggaatcc 10018742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 268
Target Start/End: Original strand, 10123211 - 10123282
Alignment:
Q  197 ttggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggtatcc 268  Q
    |||||||||| || ||| | |||| ||| ||||||||| ||||| ||| |||||||||||||||||| ||||    
T  10123211 ttggtaggtggcacacttttattgaccattgatatataacattgatactttaatggtacacaagtggaatcc 10123282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 25859063 - 25859019
Alignment:
Q  115 tatataccattgctcaattagaatgtgtcatgtggcacacccttt 159  Q
    |||||| |||||  |||||||| ||||||||||||||||||||||    
T  25859063 tatataacattggccaattagagtgtgtcatgtggcacacccttt 25859019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 34955119 - 34955067
Alignment:
Q  217 attggccaatgatatataccattggtaccttaatggtacacaagtggtatcca 269  Q
    ||||||||||| |||||| |||||||| |  ||||||||||||||||| ||||    
T  34955119 attggccaatgttatataacattggtatcccaatggtacacaagtggtgtcca 34955067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 7e-47; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 92 - 268
Target Start/End: Original strand, 5403876 - 5404052
Alignment:
Q  92 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 191  Q
    ||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||  || ||||||       ||||||||||||| ||||||||||     
T  5403876 atagcacttgtgtaccataatggtatataccattgtccaattagaatgtgtcatgtgatacgccctttaaaaaaatatatcaaataaaacatctataaag 5403975  T
Q  192 taacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggtatcc 268  Q
    ||||||||||||||| || ||| ||| || ||||| |||||||||||| ||||||||||||||||||||||||||||    
T  5403976 taacattggtaggtggcagactctaactgaccaataatatataccattagtaccttaatggtacacaagtggtatcc 5404052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 96 - 262
Target Start/End: Original strand, 1211848 - 1212014
Alignment:
Q  96 cacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaataac 195  Q
    ||||||||||||||||| |||||||||||||| | ||||||||||| || ||||||||||||||       ||||||||||||| |||| ||||| ||||    
T  1211848 cacttgtgtaccataatggtatataccattgccccattagaatgtgccacgtggcacaccctttaaaaaaatatatcaaataaagcatcgataaagtaac 1211947  T
Q  196 attggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtg 262  Q
    ||||  ||||| || ||  ||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  1211948 attgaaaggtggcacacactaattagccaatggtatataccattggtaccttaatggtacacaagtg 1212014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 92 - 269
Target Start/End: Original strand, 32644838 - 32645013
Alignment:
Q  92 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 191  Q
    ||||||||||||||| ||||| ||||||||||||| ||||||||| ||| ||||||||||||||||||       |||| ||||||||  || | ||||     
T  32644838 atagcacttgtgtac-ataatggtatataccattgttcaattagattgtatcatgtggcacaccctttaaaaaaatataacaaataaagtat-tttaaag 32644935  T
Q  192 taacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggtatcca 269  Q
    ||||||| |||||||||| ||  ||||||||||||||||||||| || | || |||||||||||||| |||| |||||    
T  32644936 taacatttgtaggtgacacaccttaattggccaatgatatatactatcgatatcttaatggtacacaggtggaatcca 32645013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 96 - 264
Target Start/End: Complemental strand, 34245735 - 34245566
Alignment:
Q  96 cacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnn-tatatcaaataaatcatctataaaataa 194  Q
    |||||||||||||| ||| |||||| ||||   ||||||   ||||||||||||||||| ||||        |||||||||||||  || |||||| |||    
T  34245735 cacttgtgtaccattatattatataacattagccaattaaggtgtgtcatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaa 34245636  T
Q  195 cattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggt 264  Q
    |||||||| ||| || ||| | ||||| ||||| |||||| ||||  |||||||||||||||||||||||    
T  34245635 cattggtacgtggcacacttttattggtcaatgttatataacattaataccttaatggtacacaagtggt 34245566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 198 - 265
Target Start/End: Complemental strand, 11753232 - 11753165
Alignment:
Q  198 tggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggta 265  Q
    |||||||||  | ||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  11753232 tggtaggtgggacactctaattggccgatggtatataccattggtaccttaatggtacacaagtggta 11753165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 170 - 268
Target Start/End: Complemental strand, 11113649 - 11113551
Alignment:
Q  170 atcaaataaatcatctataaaataacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggtatcc 268  Q
    |||||||||| ||  || ||| ||||||| ||| |||||| ||| | ||| | ||||| |||||| ||||||||||||||||||||||||||| |||||    
T  11113649 atcaaataaagcacttacaaagtaacattagtatgtgacacactcttattagtcaatgttatatagcattggtaccttaatggtacacaagtgttatcc 11113551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 10503259 - 10503303
Alignment:
Q  92 atagcacttgtgtaccataatagtatataccattgctcaattaga 136  Q
    ||||||||||||||||||||| |||||||||||||  ||||||||    
T  10503259 atagcacttgtgtaccataatggtatataccattgtccaattaga 10503303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 92 - 263
Target Start/End: Complemental strand, 11365 - 11195
Alignment:
Q  92 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 191  Q
    |||||| |||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||       ||||||||||||| ||| ||||||     
T  11365 atagcatttgtgtaccataatggtatataccattgctcagttagaatgtgtcacgtggcacaccctttaaaaatgtatatcaaataaaacatttataaag 11266  T
Q  192 taacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtgg 263  Q
    |||||||||||||||  ||||||||| ||| |||||||||||| ||||||||  ||||||||||||||||||    
T  11265 taacattggtaggtggtatactataa-tggtcaatgatatatatcattggtaatttaatggtacacaagtgg 11195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 92 - 262
Target Start/End: Original strand, 13005 - 13176
Alignment:
Q  92 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcaca-ccctttnnnnnnntatatcaaataaatcatctataaa 190  Q
    ||||||||||||||||||||| |||||||||||||| | ||||||||||| || |||||||| ||||||       ||||||||||||| |||| |||||    
T  13005 atagcacttgtgtaccataatggtatataccattgccccattagaatgtgccacgtggcacaaccctttaaaaaaatatatcaaataaagcatcgataaa 13104  T
Q  191 ataacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtg 262  Q
     ||||||||  ||||| || ||  ||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  13105 gtaacattgaaaggtggcacacactaattagccaatggtatataccattggtaccttaatggtacacaagtg 13176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 92 - 268
Target Start/End: Complemental strand, 34363 - 34189
Alignment:
Q  92 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 191  Q
    |||||| |||||||||||||  ||||||| ||||   |||||||||||||||| ||| ||||||||||       |||||||||||||  || ||||||     
T  34363 atagcatttgtgtaccataag-gtatataacattatccaattagaatgtgtcacgtgacacaccctttaaaaaa-tatatcaaataaaatatttataaag 34266  T
Q  192 taacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggtatcc 268  Q
    ||| ||||||| ||| || ||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  34265 taatattggtaagtggcacactctaattggccaataatatataccattggtaccttaatggtacacaagtggaatcc 34189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 167 - 268
Target Start/End: Original strand, 23174 - 23269
Alignment:
Q  167 tatatcaaataaatcatctataaaataacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggtat 266  Q
    |||||||||||||  || |||||| ||| ||||||||||| || ||| ||||||||||||||||||      | |||||||||||||||||||||| |||    
T  23174 tatatcaaataaaatatttataaagtaaaattggtaggtggcacactctaattggccaatgatata------tcgtaccttaatggtacacaagtgttat 23267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 23141 - 23088
Alignment:
Q  215 taattggccaatgatatataccattggtaccttaatggtacacaagtggtatcc 268  Q
    ||||||||||||  ||||||||||||||||||||||| |||||||||| |||||    
T  23141 taattggccaatagtatataccattggtaccttaatgatacacaagtgttatcc 23088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 270
Target Start/End: Complemental strand, 73168 - 73064
Alignment:
Q  167 tatatcaaataaat-catctataaaataacattggtaggtgacatactataattggccaatgatatataccattggtaccttaatggtacacaagtggta 265  Q
    |||||||||||||  ||| |||||| |||||||| ||| ||| | | | |||||| |||||| |||||||||||  ||| || |||||| ||||||||||    
T  73168 tatatcaaataaaagcatttataaagtaacattgatagatgagacattctaattgaccaatggtatataccattaatactttgatggtatacaagtggta 73069  T
Q  266 tccac 270  Q
    |||||    
T  73068 tccac 73064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University