View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14275_low_17 (Length: 466)
Name: NF14275_low_17
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Complemental strand, 45530926 - 45530473
Alignment:
| Q |
1 |
ataattttaactaatatctttgaccttgaaatataagggggtatctattcannnnnnn----tacctctagatacaatccatactttccaacaagtgata |
96 |
Q |
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| T |
45530926 |
ataattttaactaatatctttgaccttgaaatataagggggtatctattcaccccccccccctacctctagatacaatccatactttccaacaagtgata |
45530827 |
T |
|
| Q |
97 |
tcagatcacctggtcttttgactaagagctttaaacacctcaaaagctcgaattcgaatgggggttgcaatagaactctagttttcgctggtgagaatta |
196 |
Q |
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| T |
45530826 |
tcagatcacctggtcttttgactaagagctttaaacagctcaaaagctcgaattcgaatgggggttgcaatagaactctagttttcgctggtgagaatta |
45530727 |
T |
|
| Q |
197 |
tatgtattggaaaaattatgag--ttcatatcacatggtttattatatggaagtttggcaatccgtcaaaaatgggtcttttatgctgattgtagaaaat |
294 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45530726 |
tatgtattggaaaaattatgagagttcatatcacatggtttattatatggaagtttggcaatccgtcaaaaatgggtcttttatgctgattgtagaaaat |
45530627 |
T |
|
| Q |
295 |
gagaggattgacctagataaatcagaggataattgacagatgttgaggctgagacagtatagaatgactggaaggcatgctacattctcatctctgctct |
394 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45530626 |
gagaggattgacctagataaatcagaggataatagacagatgttgaggctgagacagtatagaatgactggaaggcatgctacattctcatctctgctct |
45530527 |
T |
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| Q |
395 |
tggattcaataaacattaccgtgtatcccactataaatttgcaaaggcggtgcg |
448 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45530526 |
tggattcgataaacattaccgtgtatcccactataaatttgcaaaggcggtgcg |
45530473 |
T |
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