View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14275_low_18 (Length: 460)
Name: NF14275_low_18
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 11 - 445
Target Start/End: Original strand, 46848228 - 46848668
Alignment:
| Q |
11 |
tcaaaccaaaatgaatcttttttggacaaatttgaatcataagtttcacaagtatcaacatcataaattaatatgttcagtggaatccatgattccaaag |
110 |
Q |
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| T |
46848228 |
tcaaaccaaaatgactcttttttggacaaatttgaatcataagtttcacaagtatcaacatcataaattaatatgttcagtggaatccatgattccaaag |
46848327 |
T |
|
| Q |
111 |
ctttacgactactttcattcatatattcaagaacatattcttcaaaatccttagaaggtgagattttgaggctatcccaacacatacaatccgttgtaag |
210 |
Q |
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| T |
46848328 |
ctttacgactactttcattcatatattcaagaacatattcttcaaaatccttagaaggtgagattttgaggctatcccaacacatacaatccgttgcaag |
46848427 |
T |
|
| Q |
211 |
cttgattataattggccatgaatcattggannnnnnngatgcacccttattgctatattctgtgacattggacatggttactctactaatgttttctctt |
310 |
Q |
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| T |
46848428 |
cttgattataattggccatgaatcattggatttttttgatgcacccttattgctacattctgtgacattggacatggttactctactaatgttctctctt |
46848527 |
T |
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| Q |
311 |
gaaatttcaactgctaaataaaatgaaagtgaagtgataagataaattggttaatctaatctctctttatattatgcatttcactttgccagttcatgat |
410 |
Q |
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| T |
46848528 |
gaaatttcaactgctaaataaaatgaaagtgaagtgataagataaattggttaatctaatctctctttatattatgcatttcactttgccagttcatgat |
46848627 |
T |
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| Q |
411 |
tcatggatt------tcattagtcattcacgtttaatttct |
445 |
Q |
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| T |
46848628 |
tcatggatttcatactcattagtcattcacgtttaatttct |
46848668 |
T |
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