View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14275_low_2 (Length: 788)
Name: NF14275_low_2
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 717; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 717; E-Value: 0
Query Start/End: Original strand, 10 - 770
Target Start/End: Original strand, 30098722 - 30099483
Alignment:
| Q |
10 |
aagaatattccaaacaaatggaaaggaacatgtgaaactggccaagaattcaatacctcaatgtgtaacttcaaattgattggagctagatatttcaaca |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30098722 |
aagaaaattccaaacaaatggaaaggaacatgtgaaactggccaagaattcaatacctcaatgtgtaacttcaaattgattggagctagatatttcaaca |
30098821 |
T |
|
| Q |
110 |
aaggtgtgattgcttcaaatccaaatgttacaatcagcatgaactcagctagagacactataggacatggaactcacacatcatcaactgttgcaggtaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
30098822 |
aaggtgtgattgcttcaaatccaaatgttacaatcagcatgaactcagctagagacactatagggcatggaactcacacatcatcaactgttgcaggtaa |
30098921 |
T |
|
| Q |
210 |
ctannnnnnn-gtggttggagacaaatgttagtaaattatgttagtttccggtgtttgaactctcgacttcctagctagtactcattcggtgtctctgag |
308 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30098922 |
ctattttttttgttgttggagacaaatgttagtaaattatgttagtttccggtgtttgaactctcgacttcctagctagtactcattcggtgtctctgag |
30099021 |
T |
|
| Q |
309 |
cttaccaatcgaactgtctgctttgaacttgtaggtaactatgttaatggagcttcttattttggttatgctaaaggaatagcaagaggcattgcaccaa |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
30099022 |
cttaccaatcgaactgtctgctttgaacttgtaggtaactatgttaatggagcttcttattttggttatgccaaaggaatagcaagaggcattgcaccaa |
30099121 |
T |
|
| Q |
409 |
aagctaggattgctatgtacaaagtcatttgggaagagggtcgtttcgcctctgatgttttagctggcatggaccaagctattaacgacggtgttgatgt |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30099122 |
aagctaggattgctatgtacaaagtcatttgggaagagggtcgtttcgcctctgatgttttagctggcatggaccaagctattaacgacggtgttgatgt |
30099221 |
T |
|
| Q |
509 |
gatttcaatttcaatgggatttgatgatgttccactttatgaagatcctatagcaatagcttcatttgcagctatggaaaaagggattgttgtttcatct |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30099222 |
gatttcaatttcaatgggatttgatgatgttccactttatgaagatcctatagcaatagcttcatttgcagctatggaaaaagggattgttgtttcatct |
30099321 |
T |
|
| Q |
609 |
tctgcaggtaacgcaggacctgaattcggaaccttgcacaatggtatcccatggctccttactgcagctgcaggaacaatagatagaacttttggcactc |
708 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30099322 |
tctgcaggtaacgcaggacctgaattcggaaccttgcacaatggtatcccatggctccttactgcagctgcaggaacaatagatagaacttttggcactc |
30099421 |
T |
|
| Q |
709 |
ttgttttgggaaatggtcaaagcattattggttggactttgtttccagcaaatgctatagtt |
770 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30099422 |
ttgttttgggaaatggtcaaagcattattggttggactttgtttccagcaaatgctatagtt |
30099483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 285 - 761
Target Start/End: Complemental strand, 30091914 - 30091439
Alignment:
| Q |
285 |
tagtactcattcggtgtctctgagcttaccaatcgaactgtctgctttgaacttgtaggtaactatgttaatggagcttcttattttggttatgctaaag |
384 |
Q |
| |
|
|||||||| ||| || |||| ||||||| |||||| |||||||||| | |||| |||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
30091914 |
tagtactccttctgtaactctcagcttactaatcgagctgtctgcttcggacttc-aggtaactatgtcaatggaacttcttattttggttatgctaaag |
30091816 |
T |
|
| Q |
385 |
gaatagcaagaggcattgcaccaaaagctaggattgctatgtacaaagtcatttgggaagagggtcgtttcgcctctgatgttttagctggcatggacca |
484 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||| |||||||| |
|
|
| T |
30091815 |
gagtagcaagaggcattgcaccaagagctaggcttgctatgtacaaagtcatttgggaagagggtcttttggcttctgatgttttagctggaatggacca |
30091716 |
T |
|
| Q |
485 |
agctattaacgacggtgttgatgtgatttcaatttcaatgggatttgatgatgttccactttatgaagatcctatagcaatagcttcatttgcagctatg |
584 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
30091715 |
agctattgctgatggtgttgatgtgatttcaatttctatgggatttgatggtgttccactttatgaagatgctatagcaatagcttcttttgcagctatg |
30091616 |
T |
|
| Q |
585 |
gaaaaagggattgttgtttcatcttctgcaggtaacgcaggacctgaattcggaaccttgcacaatggtatcccatggctccttactgcagctgcaggaa |
684 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||| |||||||| | ||||| ||||||||||||||||| ||| | ||||||| ||||||||||| |
|
|
| T |
30091615 |
gagaaagggattgttgtttcgtcttctgcaggtaactcaggacctaagcatggaactttgcacaatggtatcccttgggttcttactgtagctgcaggaa |
30091516 |
T |
|
| Q |
685 |
caatagatagaacttttggcactcttgttttgggaaatggtcaaagcattattggttggactttgtttccagcaaat |
761 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||| || ||||| |
|
|
| T |
30091515 |
ccatagatagaacttttggcagccttgttttggggaatggtcaaaacattattggttggactttgtttgcatcaaat |
30091439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 341 - 743
Target Start/End: Complemental strand, 30087879 - 30087477
Alignment:
| Q |
341 |
aggtaactatgttaatggagcttcttattttggttatgctaaaggaatagcaagaggcattgcaccaaaagctaggattgctatgtacaaagtcatttgg |
440 |
Q |
| |
|
|||||||||||| || ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30087879 |
aggtaactatgtcaacggagcttcttattttggctatgctaaaggagtagcaagaggcattgcaccaaaagctaagattgctatgtacaaagtcatttgg |
30087780 |
T |
|
| Q |
441 |
gaagagggtcgtttcgcctctgatgttttagctggcatggaccaagctattaacgacggtgttgatgtgatttcaatttcaatgggatttgatgatgttc |
540 |
Q |
| |
|
||||||| | | | || ||||||||||||||||| ||||||||||| |||| || |||||||| |||||||||||||| || ||| |||||| | ||| |
|
|
| T |
30087779 |
gaagaggatgttatggcttctgatgttttagctggaatggaccaagcaattattgatggtgttgacgtgatttcaatttctattggaattgatggtattc |
30087680 |
T |
|
| Q |
541 |
cactttatgaagatcctatagcaatagcttcatttgcagctatggaaaaagggattgttgtttcatcttctgcaggtaacgcaggacctgaattcggaac |
640 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||| | ||||| |
|
|
| T |
30087679 |
cactttatgaagatgctatagcaatagcttcttttacagctatggagaaagggattgttgtttcatcttctgcaggtaactcaggacctaagcatggaac |
30087580 |
T |
|
| Q |
641 |
cttgcacaatggtatcccatggctccttactgcagctgcaggaacaatagatagaacttttggcactcttgttttgggaaatggtcaaagcattattggt |
740 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||| |||||||||||| | ||||||||||||||||| |||||||||||||||||| ||| |||||||||| |
|
|
| T |
30087579 |
cttgcacaatggtatcccttgggtccttactgtagctgcaggaaccacagatagaacttttggcagccttgttttgggaaatggtgaaaacattattggt |
30087480 |
T |
|
| Q |
741 |
tgg |
743 |
Q |
| |
|
||| |
|
|
| T |
30087479 |
tgg |
30087477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 10 - 212
Target Start/End: Complemental strand, 30092144 - 30091942
Alignment:
| Q |
10 |
aagaatattccaaacaaatggaaaggaacatgtgaaactggccaagaattcaatacctcaatgtgtaacttcaaattgattggagctagatatttcaaca |
109 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||| |||||||| |||| ||||| ||||||||| ||||||||||||||| |||||||| |
|
|
| T |
30092144 |
aagaaaattccgaacaaatggaaaggaacatgtgaaactggccataaattcaatgcctccatgtgcaacttcaaactgattggagctagatctttcaaca |
30092045 |
T |
|
| Q |
110 |
aaggtgtgattgcttcaaatccaaatgttacaatcagcatgaactcagctagagacactataggacatggaactcacacatcatcaactgttgcaggtaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||| |||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
30092044 |
aaggtgtgattgcttcaaatccaaatgttagaatcaggatgaactcagctagagacagtatcggacatggaactcatacatcatcaacagttgcaggtaa |
30091945 |
T |
|
| Q |
210 |
cta |
212 |
Q |
| |
|
||| |
|
|
| T |
30091944 |
cta |
30091942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 30088186 - 30087982
Alignment:
| Q |
10 |
aagaatattccaaacaaatggaaaggaacatgtgaaactggccaagaattcaatacctcaatgtgtaacttcaaattgattggagctagatatttcaaca |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||| |||| ||||||||| |||||||||| |||| |||||| | |
|
|
| T |
30088186 |
aagaaaattccaaacaaatggaaaggaacatgtgaaactggccataaattcaatgcctccgtgtgcaacttcaaactgattggagcaagatctttcaata |
30088087 |
T |
|
| Q |
110 |
aaggtgtgattgc---ttcaaatccaaatgttacaatcagcatgaactcagctagagacactataggacatggaactcacacatcatcaactgttgcagg |
206 |
Q |
| |
|
||||||||||||| | ||| ||||||| |||||||| ||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
30088086 |
aaggtgtgattgcaggtaactatcgaaatgttggaatcagcaagaactcagctagagacagtatcggacatggaactcatacatcatcaactgttgcagg |
30087987 |
T |
|
| Q |
207 |
taact |
211 |
Q |
| |
|
||||| |
|
|
| T |
30087986 |
taact |
30087982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 4e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 4 - 197
Target Start/End: Complemental strand, 35171779 - 35171586
Alignment:
| Q |
4 |
atgtcgaagaatattccaaacaaatggaaaggaacatgtgaaactggccaagaattcaatacctcaatgtgtaacttcaaattgattggagctagatatt |
103 |
Q |
| |
|
|||||||| || || |||| ||||||||||||| |||| || | || ||||| ||||| || || ||||||||||| ||||| |||||||||||||||| |
|
|
| T |
35171779 |
atgtcgaaaaacatcccaacaaaatggaaaggaaaatgtcaagcaggacaagatttcaacacttctatgtgtaacttgaaattaattggagctagatatt |
35171680 |
T |
|
| Q |
104 |
tcaacaaaggtgtgattgcttcaaatccaaatgttacaatcagcatgaactcagctagagacactataggacatggaactcacacatcatcaac |
197 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| | |||||| |||||||||||||||||||| ||||||||| | ||||||||||||||| |
|
|
| T |
35171679 |
tcaacaaaggtgtgattgcatcaaaaccaaatgtcaaaatcagtatgaactcagctagagacacacaaggacatggtagtcacacatcatcaac |
35171586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 369 - 613
Target Start/End: Complemental strand, 35171551 - 35171307
Alignment:
| Q |
369 |
tttggttatgctaaaggaatagcaagaggcattgcaccaaaagctaggattgctatgtacaaagtcatttgggaagagggtcgtttcgcctctgatgttt |
468 |
Q |
| |
|
||||||||||| ||||| |||| ||||| ||||||||||||||||| ||||| ||||| ||||| ||||||| || |||||| | || ||||||||| |
|
|
| T |
35171551 |
tttggttatgcaaaaggtgtagctagaggtattgcaccaaaagctagaattgcaatgtataaagtactttgggacgaaggtcgtctagcttctgatgttc |
35171452 |
T |
|
| Q |
469 |
tagctggcatggaccaagctattaacgacggtgttgatgtgatttcaatttcaatgggatttgatgatgttccactttatgaagatcctatagcaatagc |
568 |
Q |
| |
|
| || || ||||| ||||||||| | || ||||||||| || ||||| ||| | || ||| || ||||||||||||||||||||| | |||||||| |
|
|
| T |
35171451 |
ttgcaggaatggatcaagctattgatgataatgttgatgttatctcaatctcattaggttttaatagtgttccactttatgaagatccagttgcaatagc |
35171352 |
T |
|
| Q |
569 |
ttcatttgcagctatggaaaaagggattgttgtttcatcttctgc |
613 |
Q |
| |
|
|||||||||||| ||||||||| | ||||||||||||||||| |
|
|
| T |
35171351 |
ttcatttgcagcaatggaaaaaaatgtggttgtttcatcttctgc |
35171307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 547 - 619
Target Start/End: Complemental strand, 8946639 - 8946567
Alignment:
| Q |
547 |
atgaagatcctatagcaatagcttcatttgcagctatggaaaaagggattgttgtttcatcttctgcaggtaa |
619 |
Q |
| |
|
|||||||||| || |||||||| || |||||||||||||||||||| ||| |||| || | ||| |||||||| |
|
|
| T |
8946639 |
atgaagatccgattgcaatagcctcttttgcagctatggaaaaaggtatttttgtgtcttgttcagcaggtaa |
8946567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University