View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14275_low_20 (Length: 454)
Name: NF14275_low_20
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 15 - 438
Target Start/End: Complemental strand, 48269190 - 48268767
Alignment:
| Q |
15 |
aatgcattacataaagtagaaaactggtaatcaaaactagtacatatttttaaaattttcagttatcaccaatagggaattaaaagaaactgttgggaga |
114 |
Q |
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| T |
48269190 |
aatgcattacataaagtagaaaactggaaatcaaaactagtacgaatttttaaaattttcagttatcaccaatagtgaattaaaagaaactgttgggaga |
48269091 |
T |
|
| Q |
115 |
atgaatatcattcttatgcaaattaatttatattaggaacacagaaagttgaaacagtaacatatcaacaaatgtaattctcatgacaacaaaaatttca |
214 |
Q |
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| T |
48269090 |
atgaatatcattcttatgcaaatttctttatattaggaacaaagaaagttgaaacagtaacatatcaacaaatgtaattctcatgacaacaaaaatttca |
48268991 |
T |
|
| Q |
215 |
gcaaactaacaattaagaataatgtctatactaaaagaaaatgtataatattacctaacattgttgttcccatcagtctgaaatgtatctggcttggaac |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48268990 |
gcaaactaacaattaagaataatgtctatactaaaagaaaatgtataatattacctaacattgttgttcccatcagtctgaaatgtatctggcttggaac |
48268891 |
T |
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| Q |
315 |
caagtttcataaacttcatctggacaatataagatctactttcctctaagaagatggtaactcaaacnnnnnnngcttcaatactactcaatctctgatt |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
48268890 |
caagtttcataaacttcatctggacaatataagatctactttcctctaagaagatggtaactcaaacaaaaaaagcttcaatactactcaatctctgatt |
48268791 |
T |
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| Q |
415 |
cctaattcaaacatccctacatat |
438 |
Q |
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| T |
48268790 |
cctaattcaaacatccctacatat |
48268767 |
T |
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