View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14275_low_21 (Length: 451)
Name: NF14275_low_21
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 140 - 404
Target Start/End: Complemental strand, 55154413 - 55154161
Alignment:
| Q |
140 |
atccggaacaattttaacgtatgaagcttagaatagcaaaggttgcgttttcacccgacactagttttgttcttttagttaattacaaaaagatggccaa |
239 |
Q |
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| T |
55154413 |
atccggaacaattttaacgtatgaagcttagaatagcaa---------tttcacccgacactagttttgttcttttagttaattacaaaaagatggccaa |
55154323 |
T |
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| Q |
240 |
tcctttcaaaactttatcatattttctttcatgtcattaaaatcaacaaggcaccaagttaatgtagttcatcatcatcagttcaaagaaaacagacgta |
339 |
Q |
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| T |
55154322 |
tcctttcaaaacttaatcatattttctttcatgtcattaaaatcaacaaggcaccaagttaatgtagttcatc---atcagttcaaagaaaacagacgta |
55154226 |
T |
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| Q |
340 |
ttggttgctgagtaatcacatcacagtacaattaaagattgatagtgttcaatatgtatataaat |
404 |
Q |
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| T |
55154225 |
ttggttgctgagtaatcacatcacagtacaattaaagattgatagtattcaataagtatataaat |
55154161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 207 - 357
Target Start/End: Complemental strand, 55173940 - 55173790
Alignment:
| Q |
207 |
tgttcttttagttaattacaaaaa--gatggccaatcctttcaaaactttatcatattttct-ttcatgtcattaaaatcaacaaggcaccaagttaatg |
303 |
Q |
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| T |
55173940 |
tgttgttttcgttaattacaaaaaaagatggccaatccttgcaaaagtttcttatactttctgttcatgttagtaaaatcaacagggcaccaagtcaatg |
55173841 |
T |
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| Q |
304 |
tagttcatcatcatcagttcaaagaaaacagacgtattggttgctgagtaatca |
357 |
Q |
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| T |
55173840 |
cag---gtcatccccagttgaaagaaaacaaacatattggttgctgaataatca |
55173790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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