View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14275_low_25 (Length: 432)

Name: NF14275_low_25
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14275_low_25
NF14275_low_25
[»] chr4 (7 HSPs)
chr4 (141-351)||(55246503-55246727)
chr4 (372-432)||(55246287-55246347)
chr4 (1-72)||(55246796-55246867)
chr4 (239-300)||(9041871-9041932)
chr4 (239-293)||(55245971-55246025)
chr4 (239-308)||(53687701-53687770)
chr4 (239-298)||(53896780-53896839)
[»] chr1 (1 HSPs)
chr1 (239-341)||(31868333-31868437)
[»] chr7 (4 HSPs)
chr7 (239-301)||(4997165-4997227)
chr7 (243-293)||(4996420-4996470)
chr7 (239-289)||(48850480-48850530)
chr7 (248-308)||(33223206-33223266)
[»] chr3 (1 HSPs)
chr3 (239-303)||(38052580-38052644)
[»] chr6 (4 HSPs)
chr6 (243-298)||(1634938-1634993)
chr6 (239-301)||(19802532-19802594)
chr6 (249-298)||(4222794-4222843)
chr6 (242-298)||(19803247-19803303)
[»] chr8 (1 HSPs)
chr8 (244-289)||(21510783-21510828)


Alignment Details
Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 141 - 351
Target Start/End: Complemental strand, 55246727 - 55246503
Alignment:
Q  141 caatatttaaccttaaataaaataagtagatttttgtatttttacataagtaacg-ata----ct--------ttgggatcatcatccactagatggttg 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||    ||        |||||||||||||||||||||||||||    
T  55246727 caatatttaaccttaaataaaataagtagatttttgtatttttacagaagtaacggatatcttctaattaaagttgggatcatcatccactagatggttg 55246628  T
Q  228 gtttctcacgggaaaattgcttttctgacattcaaaacgtcatatttatacatggaaatgacgtttcta-cctccaacggtaattagatttatccgacgg 326  Q
    |||||||| |||||||||  |||||||||||||||||||||||||||| | || |||||||| ||| || || |||||||||||||||||||||||||||    
T  55246627 gtttctcatgggaaaattaattttctgacattcaaaacgtcatatttacatatagaaatgacatttttatcccccaacggtaattagatttatccgacgg 55246528  T
Q  327 tatttaactaccgttcaaatataca 351  Q
    || ||||||||||||||| ||||||    
T  55246527 tagttaactaccgttcaagtataca 55246503  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 372 - 432
Target Start/End: Complemental strand, 55246347 - 55246287
Alignment:
Q  372 tatgtttctcttgtcttccttggcttcatcgtaatcatcattatccttatcaacaaccttt 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55246347 tatgtttctcttgtcttccttggcttcatcgtaatcatcattatccttatcaacaaccttt 55246287  T

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Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 55246867 - 55246796
Alignment:
Q  1 tttttgaaagatacacatacattgatttaacaaaggagactaaaatttctgacatgaaatatatattgtgga 72  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  55246867 ttttttaaagatacacatacattgatttaacaaaggaaactaaaatttctcacatgaaatatatattgtgga 55246796  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 239 - 300
Target Start/End: Original strand, 9041871 - 9041932
Alignment:
Q  239 gaaaattgcttttctgacattcaaaacgtcatatttatacatggaaatgacgtttctacctc 300  Q
    |||| |||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  9041871 gaaatttgcttttatgacattcaaaacgtcatattgatacatggaaatgacgtttttacctc 9041932  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 55245971 - 55246025
Alignment:
Q  239 gaaaattgcttttctgacattcaaaacgtcatatttatacatggaaatgacgttt 293  Q
    |||||||| |||| |||| |||||||||||||||| | |||||||||||||||||    
T  55245971 gaaaattgtttttttgacgttcaaaacgtcatattgacacatggaaatgacgttt 55246025  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 239 - 308
Target Start/End: Original strand, 53687701 - 53687770
Alignment:
Q  239 gaaaattgcttttctgacattcaaaacgtcatatttatacatggaaatgacgtttctacctccaacggta 308  Q
    ||||||| ||||||||||||||||||||||||||| | ||||  ||||||| ||| || ||||| |||||    
T  53687701 gaaaattacttttctgacattcaaaacgtcatattgacacataaaaatgacatttttatctccagcggta 53687770  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 298
Target Start/End: Complemental strand, 53896839 - 53896780
Alignment:
Q  239 gaaaattgcttttctgacattcaaaacgtcatatttatacatggaaatgacgtttctacc 298  Q
    |||||||||||||||||||| |||| | ||||| | | ||||||||||||||||| ||||    
T  53896839 gaaaattgcttttctgacatacaaagcttcataatgacacatggaaatgacgtttttacc 53896780  T

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Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 239 - 341
Target Start/End: Original strand, 31868333 - 31868437
Alignment:
Q  239 gaaaattgcttttctgacattcaaaacgtcatatttatacatggaaatgacgtttctacctccaacggta--attagatttatccgacggtatttaacta 336  Q
    ||||||||||||| ||| |||||||||||||| || | ||||| ||||||||||| |||| |||||||||  | |||||| ||||| ||||| |||||||    
T  31868333 gaaaattgcttttttgatattcaaaacgtcatgttgacacatgaaaatgacgtttttacccccaacggtaccactagattgatccggcggtagttaacta 31868432  T
Q  337 ccgtt 341  Q
    |||||    
T  31868433 ccgtt 31868437  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 239 - 301
Target Start/End: Complemental strand, 4997227 - 4997165
Alignment:
Q  239 gaaaattgcttttctgacattcaaaacgtcatatttatacatggaaatgacgtttctacctcc 301  Q
    ||||||||||||| ||||||||||||| ||||||| | ||||||||||||||||| |||||||    
T  4997227 gaaaattgcttttttgacattcaaaacttcatattgacacatggaaatgacgtttttacctcc 4997165  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 243 - 293
Target Start/End: Original strand, 4996420 - 4996470
Alignment:
Q  243 attgcttttctgacattcaaaacgtcatatttatacatggaaatgacgttt 293  Q
    ||||||||||||||||||||||||||||||| | ||||| |||||||||||    
T  4996420 attgcttttctgacattcaaaacgtcatattgacacatgaaaatgacgttt 4996470  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 48850480 - 48850530
Alignment:
Q  239 gaaaattgcttttctgacattcaaaacgtcatatttatacatggaaatgac 289  Q
    ||||||||| ||||||||||||||||||| ||||| | ||||| |||||||    
T  48850480 gaaaattgcatttctgacattcaaaacgttatattgacacatgaaaatgac 48850530  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 308
Target Start/End: Complemental strand, 33223266 - 33223206
Alignment:
Q  248 ttttctgacattcaaaacgtcatatttatacatggaaatgacgtttctacctccaacggta 308  Q
    |||| ||||||||||||||||||||| | |||| |||||||| |||  |||||| ||||||    
T  33223266 ttttttgacattcaaaacgtcatattgacacatagaaatgacattttaacctccgacggta 33223206  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 239 - 303
Target Start/End: Original strand, 38052580 - 38052644
Alignment:
Q  239 gaaaattgcttttctgacattcaaaacgtcatatttatacatggaaatgacgtttctacctccaa 303  Q
    ||||||||||||||||||||| ||||||||||||| | | ||||||||||| ||| |||||||||    
T  38052580 gaaaattgcttttctgacattgaaaacgtcatattaacatatggaaatgacatttttacctccaa 38052644  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 298
Target Start/End: Complemental strand, 1634993 - 1634938
Alignment:
Q  243 attgcttttctgacattcaaaacgtcatatttatacatggaaatgacgtttctacc 298  Q
    ||||||||||||||||||||||||| ||||| | ||||||||||||||||| ||||    
T  1634993 attgcttttctgacattcaaaacgttatattgacacatggaaatgacgtttttacc 1634938  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 301
Target Start/End: Original strand, 19802532 - 19802594
Alignment:
Q  239 gaaaattgcttttctgacattcaaaacgtcatatttatacatggaaatgacgtttctacctcc 301  Q
    ||||||| ||||| ||||||||||||| ||||||| | ||||| |||||| |||| |||||||    
T  19802532 gaaaattacttttttgacattcaaaacatcatattgacacatgaaaatgatgtttttacctcc 19802594  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 4222843 - 4222794
Alignment:
Q  249 tttctgacattcaaaacgtcatatttatacatggaaatgacgtttctacc 298  Q
    |||||||| |||||||||||||||| | ||||| ||||||||||| ||||    
T  4222843 tttctgaccttcaaaacgtcatattgacacatgaaaatgacgtttttacc 4222794  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 298
Target Start/End: Complemental strand, 19803303 - 19803247
Alignment:
Q  242 aattgcttttctgacattcaaaacgtcatatttatacatggaaatgacgtttctacc 298  Q
    ||||||| |||||||||||||||||| ||||| | ||||| ||||||| ||| ||||    
T  19803303 aattgctcttctgacattcaaaacgtaatattgacacatgaaaatgacttttttacc 19803247  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 21510783 - 21510828
Alignment:
Q  244 ttgcttttctgacattcaaaacgtcatatttatacatggaaatgac 289  Q
    ||||||||| |||||||||||| ||||| | |||||||||||||||    
T  21510783 ttgcttttccgacattcaaaacttcataataatacatggaaatgac 21510828  T

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